Gcaud1457.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1457.t1
Unique Name	Gcaud1457.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	706

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_566_length_21798_cov_4.589994	contig	NODE_566_length_21798_cov_4.589994:7428..9545 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4096.XP_009798773.1
PFAMs	CASP_C
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K09313
Evalue	2.66e-63
EggNOG OGs	KOG0963@1\|root,KOG0963@2759\|Eukaryota,37SEU@33090\|Viridiplantae,3G7EH@35493\|Streptophyta,44FKH@71274\|asterids
Description	AtCASP,CASP
COG category	K
BRITE	ko00000,ko03000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1457	Gcaud1457	Gracilaria caudata M_176_S67 male	gene	NODE_566_length_21798_cov_4.589994 7428..9545 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1457.t1.stop1	Gcaud1457.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_566_length_21798_cov_4.589994 7428..7430 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1457.t1.CDS1	Gcaud1457.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_566_length_21798_cov_4.589994 7428..9545 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1457.t1.exon1	Gcaud1457.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_566_length_21798_cov_4.589994 7428..9545 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1457.t1.start1	Gcaud1457.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_566_length_21798_cov_4.589994 9543..9545 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1457.t1	Gcaud1457.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_566_length_21798_cov_4.589994 7428..9545 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_566_length_21798_cov_4.589994:7428..9545-
coding sequence from alignment at NODE_566_length_21798_cov_4.589994:7428..9545-

mRNA sequence

>Gcaud1457.t1 ID=Gcaud1457.t1|Name=Gcaud1457.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=706bp
MSITENAPAVPDSSPAEAQQQSPLEIWRAFDLNGRRAELDKHGLEIADRM
EQSQASRKQLTTATRALRASMADGSTVPKKDYISLLKSYQTEVDALTNRA
KLAETVFLSLYKDLYDVPDPVEELSRATAGFHRVQELERENEDLKRERGN
LAERNNVAAKYVKRISDLESEMAAQKNKFREEAAAKIDEKQAEWMAEQQK
TMEAYELREQELLHQLRLANDHTRKLQTTSDELTRKLNNTSSQLETMKSS
RANVSEMAIEDLERAHAEVKILRSRNMELESIVTDRENGDIDSDGTPIAR
SALSAELAAREVEVSQLRDQVAALEELLGGKDHEKSKEFAKLTHSIQEKD
RIIAEMKEELDKFPSFEEYQNIVRQFETLQSFQLMEAETSKDATEAAESS
TENHTTSVTDSLERKLLEKAKTLEGKLTRMRVEIREKDSEINELRAVVRS
NEDQIADQKSLITKLEGSISAMTSDNVAAVGSRRKGSVILDREISNLDTD
GDEGGDSAWEWGERQQAESLRSIIREEPSMLDIVAGQRDRFRARTMELEE
DNRKLMERIEKLTSDMDSLKNDNVRLYEKIRYLQSYQQSGGNIASNTGAA
SSEPHHAINIGDEDESRSFLGKYRSMYEDMVNPYTIFNRRERHKRMSEMS
APERLTLRASQRALSTKTSRLIVFFYIISLHVLVALVLSFSPTSCDQNVT
TKAQH*

spliced messenger RNA

>Gcaud1457.t1 ID=Gcaud1457.t1|Name=Gcaud1457.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2118bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:7428..9545- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTATCACCGAAAATGCTCCCGCTGTCCCTGATTCCTCTCCCGCAGA
AGCGCAACAGCAATCCCCTCTGGAGATATGGCGTGCTTTCGATCTCAATG
GTCGACGAGCCGAACTTGACAAACATGGGCTGGAAATCGCCGACCGAATG
GAACAGTCCCAGGCGTCCCGAAAGCAGCTAACCACCGCGACAAGAGCACT
GAGGGCATCTATGGCGGACGGTAGTACAGTTCCGAAAAAGGATTATATTT
CGTTACTCAAGTCCTATCAAACAGAAGTTGATGCCCTCACCAATCGCGCT
AAGCTTGCAGAGACGGTTTTTCTTTCACTTTATAAAGACCTGTACGATGT
TCCAGATCCTGTGGAGGAATTGAGTCGTGCCACTGCTGGGTTTCATAGAG
TTCAAGAACTAGAAAGGGAAAATGAAGATCTGAAGAGGGAACGAGGCAAT
CTGGCTGAGCGCAACAATGTAGCAGCCAAATATGTGAAGAGAATATCAGA
CTTAGAGTCTGAGATGGCGGCACAGAAGAACAAATTCAGAGAAGAAGCTG
CAGCCAAGATAGATGAAAAGCAGGCTGAATGGATGGCTGAGCAACAGAAG
ACTATGGAGGCGTACGAGTTACGAGAACAAGAGCTTCTTCACCAGTTGCG
CCTTGCGAATGATCATACTCGCAAATTGCAGACTACATCCGATGAGCTCA
CACGTAAGTTGAACAATACAAGTTCCCAACTTGAAACCATGAAGAGCAGC
CGAGCAAATGTTAGCGAGATGGCTATCGAAGATCTGGAACGGGCACATGC
CGAAGTGAAGATACTCCGAAGTCGCAATATGGAGCTGGAGAGCATTGTCA
CCGATCGCGAAAATGGAGATATTGATTCTGATGGCACTCCTATAGCACGG
TCTGCTTTGTCTGCCGAACTGGCAGCAAGGGAAGTTGAAGTCTCTCAACT
ACGTGACCAAGTGGCTGCCTTAGAGGAGCTACTTGGCGGAAAAGATCATG
AGAAGAGTAAAGAGTTTGCGAAGCTCACACACTCTATTCAAGAGAAAGAT
AGAATAATTGCAGAGATGAAGGAAGAACTTGACAAATTCCCGTCATTCGA
AGAATATCAAAACATAGTTCGACAGTTCGAAACTTTGCAATCATTTCAGC
TTATGGAAGCAGAAACCTCGAAAGATGCCACAGAGGCTGCGGAAAGTTCC
ACTGAAAACCATACGACAAGTGTTACTGACTCTCTTGAGAGAAAGCTGTT
AGAAAAGGCCAAGACTCTTGAGGGAAAGCTTACGCGGATGAGAGTTGAGA
TCAGAGAGAAAGACAGTGAAATCAATGAGCTGCGAGCCGTTGTGCGTTCC
AACGAGGACCAGATAGCGGATCAGAAGTCTCTAATCACCAAGCTCGAAGG
GAGCATAAGTGCAATGACAAGTGATAATGTTGCTGCTGTGGGGAGTCGAC
GAAAGGGCAGTGTAATACTTGACCGTGAAATTTCCAATCTTGATACAGAC
GGTGATGAAGGAGGTGATAGTGCATGGGAATGGGGTGAGAGACAACAAGC
AGAAAGTCTTCGCTCAATCATTCGGGAAGAGCCGTCTATGTTGGACATTG
TTGCAGGCCAGCGAGATCGATTCAGAGCAAGAACAATGGAACTCGAAGAG
GACAACAGGAAGCTAATGGAACGCATTGAGAAACTCACGAGTGACATGGA
TTCCTTGAAGAATGACAATGTGCGACTGTATGAGAAAATTCGCTATTTGC
AGTCATACCAGCAATCTGGAGGGAACATAGCAAGCAATACGGGTGCTGCC
TCATCCGAGCCCCATCATGCTATTAACATCGGTGATGAGGATGAAAGCCG
AAGCTTCCTCGGGAAGTATCGCTCCATGTACGAAGATATGGTTAACCCGT
ACACAATTTTCAACAGGCGAGAAAGACATAAGCGGATGAGCGAAATGTCA
GCTCCGGAGCGCCTGACTCTTCGTGCAAGCCAGAGAGCTCTCAGCACGAA
GACGTCGAGACTCATTGTGTTCTTCTATATAATATCTTTGCACGTGTTAG
TAGCTTTGGTTCTGAGTTTCTCACCAACAAGTTGCGATCAGAATGTCACA
ACAAAAGCGCAACATTAG

protein sequence of Gcaud1457.t1

>Gcaud1457.t1 ID=Gcaud1457.t1|Name=Gcaud1457.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=706bp
MSITENAPAVPDSSPAEAQQQSPLEIWRAFDLNGRRAELDKHGLEIADRM
EQSQASRKQLTTATRALRASMADGSTVPKKDYISLLKSYQTEVDALTNRA
KLAETVFLSLYKDLYDVPDPVEELSRATAGFHRVQELERENEDLKRERGN
LAERNNVAAKYVKRISDLESEMAAQKNKFREEAAAKIDEKQAEWMAEQQK
TMEAYELREQELLHQLRLANDHTRKLQTTSDELTRKLNNTSSQLETMKSS
RANVSEMAIEDLERAHAEVKILRSRNMELESIVTDRENGDIDSDGTPIAR
SALSAELAAREVEVSQLRDQVAALEELLGGKDHEKSKEFAKLTHSIQEKD
RIIAEMKEELDKFPSFEEYQNIVRQFETLQSFQLMEAETSKDATEAAESS
TENHTTSVTDSLERKLLEKAKTLEGKLTRMRVEIREKDSEINELRAVVRS
NEDQIADQKSLITKLEGSISAMTSDNVAAVGSRRKGSVILDREISNLDTD
GDEGGDSAWEWGERQQAESLRSIIREEPSMLDIVAGQRDRFRARTMELEE
DNRKLMERIEKLTSDMDSLKNDNVRLYEKIRYLQSYQQSGGNIASNTGAA
SSEPHHAINIGDEDESRSFLGKYRSMYEDMVNPYTIFNRRERHKRMSEMS
APERLTLRASQRALSTKTSRLIVFFYIISLHVLVALVLSFSPTSCDQNVT
TKAQH*

mRNA from alignment at NODE_566_length_21798_cov_4.589994:7428..9545-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1457.t1 ID=Gcaud1457.t1|Name=Gcaud1457.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2118bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:7428..9545- (Gracilaria caudata M_176_S67 male)
ATGAGTATCACCGAAAATGCTCCCGCTGTCCCTGATTCCTCTCCCGCAGA
AGCGCAACAGCAATCCCCTCTGGAGATATGGCGTGCTTTCGATCTCAATG
GTCGACGAGCCGAACTTGACAAACATGGGCTGGAAATCGCCGACCGAATG
GAACAGTCCCAGGCGTCCCGAAAGCAGCTAACCACCGCGACAAGAGCACT
GAGGGCATCTATGGCGGACGGTAGTACAGTTCCGAAAAAGGATTATATTT
CGTTACTCAAGTCCTATCAAACAGAAGTTGATGCCCTCACCAATCGCGCT
AAGCTTGCAGAGACGGTTTTTCTTTCACTTTATAAAGACCTGTACGATGT
TCCAGATCCTGTGGAGGAATTGAGTCGTGCCACTGCTGGGTTTCATAGAG
TTCAAGAACTAGAAAGGGAAAATGAAGATCTGAAGAGGGAACGAGGCAAT
CTGGCTGAGCGCAACAATGTAGCAGCCAAATATGTGAAGAGAATATCAGA
CTTAGAGTCTGAGATGGCGGCACAGAAGAACAAATTCAGAGAAGAAGCTG
CAGCCAAGATAGATGAAAAGCAGGCTGAATGGATGGCTGAGCAACAGAAG
ACTATGGAGGCGTACGAGTTACGAGAACAAGAGCTTCTTCACCAGTTGCG
CCTTGCGAATGATCATACTCGCAAATTGCAGACTACATCCGATGAGCTCA
CACGTAAGTTGAACAATACAAGTTCCCAACTTGAAACCATGAAGAGCAGC
CGAGCAAATGTTAGCGAGATGGCTATCGAAGATCTGGAACGGGCACATGC
CGAAGTGAAGATACTCCGAAGTCGCAATATGGAGCTGGAGAGCATTGTCA
CCGATCGCGAAAATGGAGATATTGATTCTGATGGCACTCCTATAGCACGG
TCTGCTTTGTCTGCCGAACTGGCAGCAAGGGAAGTTGAAGTCTCTCAACT
ACGTGACCAAGTGGCTGCCTTAGAGGAGCTACTTGGCGGAAAAGATCATG
AGAAGAGTAAAGAGTTTGCGAAGCTCACACACTCTATTCAAGAGAAAGAT
AGAATAATTGCAGAGATGAAGGAAGAACTTGACAAATTCCCGTCATTCGA
AGAATATCAAAACATAGTTCGACAGTTCGAAACTTTGCAATCATTTCAGC
TTATGGAAGCAGAAACCTCGAAAGATGCCACAGAGGCTGCGGAAAGTTCC
ACTGAAAACCATACGACAAGTGTTACTGACTCTCTTGAGAGAAAGCTGTT
AGAAAAGGCCAAGACTCTTGAGGGAAAGCTTACGCGGATGAGAGTTGAGA
TCAGAGAGAAAGACAGTGAAATCAATGAGCTGCGAGCCGTTGTGCGTTCC
AACGAGGACCAGATAGCGGATCAGAAGTCTCTAATCACCAAGCTCGAAGG
GAGCATAAGTGCAATGACAAGTGATAATGTTGCTGCTGTGGGGAGTCGAC
GAAAGGGCAGTGTAATACTTGACCGTGAAATTTCCAATCTTGATACAGAC
GGTGATGAAGGAGGTGATAGTGCATGGGAATGGGGTGAGAGACAACAAGC
AGAAAGTCTTCGCTCAATCATTCGGGAAGAGCCGTCTATGTTGGACATTG
TTGCAGGCCAGCGAGATCGATTCAGAGCAAGAACAATGGAACTCGAAGAG
GACAACAGGAAGCTAATGGAACGCATTGAGAAACTCACGAGTGACATGGA
TTCCTTGAAGAATGACAATGTGCGACTGTATGAGAAAATTCGCTATTTGC
AGTCATACCAGCAATCTGGAGGGAACATAGCAAGCAATACGGGTGCTGCC
TCATCCGAGCCCCATCATGCTATTAACATCGGTGATGAGGATGAAAGCCG
AAGCTTCCTCGGGAAGTATCGCTCCATGTACGAAGATATGGTTAACCCGT
ACACAATTTTCAACAGGCGAGAAAGACATAAGCGGATGAGCGAAATGTCA
GCTCCGGAGCGCCTGACTCTTCGTGCAAGCCAGAGAGCTCTCAGCACGAA
GACGTCGAGACTCATTGTGTTCTTCTATATAATATCTTTGCACGTGTTAG
TAGCTTTGGTTCTGAGTTTCTCACCAACAAGTTGCGATCAGAATGTCACA
ACAAAAGCGCAACATTAG

Coding sequence (CDS) from alignment at NODE_566_length_21798_cov_4.589994:7428..9545-

>Gcaud1457.t1 ID=Gcaud1457.t1|Name=Gcaud1457.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2118bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:7428..9545- (Gracilaria caudata M_176_S67 male)
ATGAGTATCACCGAAAATGCTCCCGCTGTCCCTGATTCCTCTCCCGCAGA
AGCGCAACAGCAATCCCCTCTGGAGATATGGCGTGCTTTCGATCTCAATG
GTCGACGAGCCGAACTTGACAAACATGGGCTGGAAATCGCCGACCGAATG
GAACAGTCCCAGGCGTCCCGAAAGCAGCTAACCACCGCGACAAGAGCACT
GAGGGCATCTATGGCGGACGGTAGTACAGTTCCGAAAAAGGATTATATTT
CGTTACTCAAGTCCTATCAAACAGAAGTTGATGCCCTCACCAATCGCGCT
AAGCTTGCAGAGACGGTTTTTCTTTCACTTTATAAAGACCTGTACGATGT
TCCAGATCCTGTGGAGGAATTGAGTCGTGCCACTGCTGGGTTTCATAGAG
TTCAAGAACTAGAAAGGGAAAATGAAGATCTGAAGAGGGAACGAGGCAAT
CTGGCTGAGCGCAACAATGTAGCAGCCAAATATGTGAAGAGAATATCAGA
CTTAGAGTCTGAGATGGCGGCACAGAAGAACAAATTCAGAGAAGAAGCTG
CAGCCAAGATAGATGAAAAGCAGGCTGAATGGATGGCTGAGCAACAGAAG
ACTATGGAGGCGTACGAGTTACGAGAACAAGAGCTTCTTCACCAGTTGCG
CCTTGCGAATGATCATACTCGCAAATTGCAGACTACATCCGATGAGCTCA
CACGTAAGTTGAACAATACAAGTTCCCAACTTGAAACCATGAAGAGCAGC
CGAGCAAATGTTAGCGAGATGGCTATCGAAGATCTGGAACGGGCACATGC
CGAAGTGAAGATACTCCGAAGTCGCAATATGGAGCTGGAGAGCATTGTCA
CCGATCGCGAAAATGGAGATATTGATTCTGATGGCACTCCTATAGCACGG
TCTGCTTTGTCTGCCGAACTGGCAGCAAGGGAAGTTGAAGTCTCTCAACT
ACGTGACCAAGTGGCTGCCTTAGAGGAGCTACTTGGCGGAAAAGATCATG
AGAAGAGTAAAGAGTTTGCGAAGCTCACACACTCTATTCAAGAGAAAGAT
AGAATAATTGCAGAGATGAAGGAAGAACTTGACAAATTCCCGTCATTCGA
AGAATATCAAAACATAGTTCGACAGTTCGAAACTTTGCAATCATTTCAGC
TTATGGAAGCAGAAACCTCGAAAGATGCCACAGAGGCTGCGGAAAGTTCC
ACTGAAAACCATACGACAAGTGTTACTGACTCTCTTGAGAGAAAGCTGTT
AGAAAAGGCCAAGACTCTTGAGGGAAAGCTTACGCGGATGAGAGTTGAGA
TCAGAGAGAAAGACAGTGAAATCAATGAGCTGCGAGCCGTTGTGCGTTCC
AACGAGGACCAGATAGCGGATCAGAAGTCTCTAATCACCAAGCTCGAAGG
GAGCATAAGTGCAATGACAAGTGATAATGTTGCTGCTGTGGGGAGTCGAC
GAAAGGGCAGTGTAATACTTGACCGTGAAATTTCCAATCTTGATACAGAC
GGTGATGAAGGAGGTGATAGTGCATGGGAATGGGGTGAGAGACAACAAGC
AGAAAGTCTTCGCTCAATCATTCGGGAAGAGCCGTCTATGTTGGACATTG
TTGCAGGCCAGCGAGATCGATTCAGAGCAAGAACAATGGAACTCGAAGAG
GACAACAGGAAGCTAATGGAACGCATTGAGAAACTCACGAGTGACATGGA
TTCCTTGAAGAATGACAATGTGCGACTGTATGAGAAAATTCGCTATTTGC
AGTCATACCAGCAATCTGGAGGGAACATAGCAAGCAATACGGGTGCTGCC
TCATCCGAGCCCCATCATGCTATTAACATCGGTGATGAGGATGAAAGCCG
AAGCTTCCTCGGGAAGTATCGCTCCATGTACGAAGATATGGTTAACCCGT
ACACAATTTTCAACAGGCGAGAAAGACATAAGCGGATGAGCGAAATGTCA
GCTCCGGAGCGCCTGACTCTTCGTGCAAGCCAGAGAGCTCTCAGCACGAA
GACGTCGAGACTCATTGTGTTCTTCTATATAATATCTTTGCACGTGTTAG
TAGCTTTGGTTCTGAGTTTCTCACCAACAAGTTGCGATCAGAATGTCACA
ACAAAAGCGCAACATTAG