Gcaud1461.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1461.t1
Unique NameGcaud1461.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length185
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_566_length_21798_cov_4.589994contigNODE_566_length_21798_cov_4.589994:13639..14193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO37509
Preferred nameNIP7
PFAMsUPF0113
Max annot lvl33208|Metazoa
KEGG koko:K07565
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0008150,GO:0022613,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0042254,GO:0042273,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071840,GO:1990904
Evalue2.18e-84
EggNOG OGsCOG1374@1|root,KOG3492@2759|Eukaryota,38ER8@33154|Opisthokonta,3BK93@33208|Metazoa
Description60S ribosome subunit biogenesis protein NIP7 homolog
COG categoryJ
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1461Gcaud1461Gracilaria caudata M_176_S67 malegeneNODE_566_length_21798_cov_4.589994 13639..14193 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1461.t1.stop1Gcaud1461.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_566_length_21798_cov_4.589994 13639..13641 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1461.t1.CDS1Gcaud1461.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_566_length_21798_cov_4.589994 13639..14193 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1461.t1.exon1Gcaud1461.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_566_length_21798_cov_4.589994 13639..14193 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1461.t1.start1Gcaud1461.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_566_length_21798_cov_4.589994 14191..14193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1461.t1Gcaud1461.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_566_length_21798_cov_4.589994 13639..14193 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1461.t1 ID=Gcaud1461.t1|Name=Gcaud1461.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=185bp
MRPLTEEETIQVFEKLAKFIGPNIKQLIDAPDETHCFRLQNDRVYYVSEK
VMRLATNVARENLASLGVCIGKFTHHKNFHVHISCLEYLGKYARHKVWVK
PSSEMSFLYGNHILKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARST
MDCRKAAPTDIVVLNQADLGMYLRSEDRTPASAL*
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spliced messenger RNA

>Gcaud1461.t1 ID=Gcaud1461.t1|Name=Gcaud1461.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=555bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:13639..14193- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCCTCTCACCGAAGAAGAAACAATACAAGTGTTTGAAAAGCTTGC
CAAGTTCATAGGGCCAAACATCAAGCAACTTATCGATGCACCGGATGAAA
CGCATTGTTTTAGATTACAGAATGACCGAGTTTACTACGTCTCTGAAAAA
GTAATGCGATTAGCAACGAACGTAGCGCGGGAAAATCTTGCTTCACTTGG
AGTTTGTATTGGCAAGTTTACTCATCACAAGAACTTTCACGTGCACATTA
GCTGCCTTGAATACCTCGGTAAATACGCTAGACACAAGGTGTGGGTCAAA
CCATCTTCAGAGATGTCGTTTTTGTATGGGAATCACATCCTTAAAGCTGG
ATTAGGGCGTATCACGGAAAACACTGAAAACGGTGCTGGCGTTGTGGTCT
ACAATATGTCAGACACACCAATTGGTTTTGGCTTGGCTGCAAGAAGCACA
ATGGATTGCCGCAAAGCTGCGCCGACAGATATTGTGGTCCTGAATCAAGC
TGACCTAGGCATGTACCTCCGCTCGGAAGACAGGACTCCGGCATCAGCTC
TGTAG
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protein sequence of Gcaud1461.t1

>Gcaud1461.t1 ID=Gcaud1461.t1|Name=Gcaud1461.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=185bp
MRPLTEEETIQVFEKLAKFIGPNIKQLIDAPDETHCFRLQNDRVYYVSEK
VMRLATNVARENLASLGVCIGKFTHHKNFHVHISCLEYLGKYARHKVWVK
PSSEMSFLYGNHILKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARST
MDCRKAAPTDIVVLNQADLGMYLRSEDRTPASAL*
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mRNA from alignment at NODE_566_length_21798_cov_4.589994:13639..14193-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1461.t1 ID=Gcaud1461.t1|Name=Gcaud1461.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=555bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:13639..14193- (Gracilaria caudata M_176_S67 male)
ATGCGCCCTCTCACCGAAGAAGAAACAATACAAGTGTTTGAAAAGCTTGC
CAAGTTCATAGGGCCAAACATCAAGCAACTTATCGATGCACCGGATGAAA
CGCATTGTTTTAGATTACAGAATGACCGAGTTTACTACGTCTCTGAAAAA
GTAATGCGATTAGCAACGAACGTAGCGCGGGAAAATCTTGCTTCACTTGG
AGTTTGTATTGGCAAGTTTACTCATCACAAGAACTTTCACGTGCACATTA
GCTGCCTTGAATACCTCGGTAAATACGCTAGACACAAGGTGTGGGTCAAA
CCATCTTCAGAGATGTCGTTTTTGTATGGGAATCACATCCTTAAAGCTGG
ATTAGGGCGTATCACGGAAAACACTGAAAACGGTGCTGGCGTTGTGGTCT
ACAATATGTCAGACACACCAATTGGTTTTGGCTTGGCTGCAAGAAGCACA
ATGGATTGCCGCAAAGCTGCGCCGACAGATATTGTGGTCCTGAATCAAGC
TGACCTAGGCATGTACCTCCGCTCGGAAGACAGGACTCCGGCATCAGCTC
TGTAG
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Coding sequence (CDS) from alignment at NODE_566_length_21798_cov_4.589994:13639..14193-

>Gcaud1461.t1 ID=Gcaud1461.t1|Name=Gcaud1461.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=555bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:13639..14193- (Gracilaria caudata M_176_S67 male)
ATGCGCCCTCTCACCGAAGAAGAAACAATACAAGTGTTTGAAAAGCTTGC
CAAGTTCATAGGGCCAAACATCAAGCAACTTATCGATGCACCGGATGAAA
CGCATTGTTTTAGATTACAGAATGACCGAGTTTACTACGTCTCTGAAAAA
GTAATGCGATTAGCAACGAACGTAGCGCGGGAAAATCTTGCTTCACTTGG
AGTTTGTATTGGCAAGTTTACTCATCACAAGAACTTTCACGTGCACATTA
GCTGCCTTGAATACCTCGGTAAATACGCTAGACACAAGGTGTGGGTCAAA
CCATCTTCAGAGATGTCGTTTTTGTATGGGAATCACATCCTTAAAGCTGG
ATTAGGGCGTATCACGGAAAACACTGAAAACGGTGCTGGCGTTGTGGTCT
ACAATATGTCAGACACACCAATTGGTTTTGGCTTGGCTGCAAGAAGCACA
ATGGATTGCCGCAAAGCTGCGCCGACAGATATTGTGGTCCTGAATCAAGC
TGACCTAGGCATGTACCTCCGCTCGGAAGACAGGACTCCGGCATCAGCTC
TGTAG
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