Gcaud1461.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1461.t1
Unique NameGcaud1461.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length185
Homology
BLAST of Gcaud1461.t1 vs. uniprot
Match: A0A2V3IIY3_9FLOR (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIY3_9FLOR)

HSP 1 Score: 355 bits (912), Expect = 6.000e-124
Identity = 170/184 (92.39%), Postives = 181/184 (98.37%), Query Frame = 0
Query:    1 MRPLTEEETIQVFEKLAKFIGPNIKQLIDAPDETHCFRLQNDRVYYVSEKVMRLATNVARENLASLGVCIGKFTHHKNFHVHISCLEYLGKYARHKVWVKPSSEMSFLYGNHILKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARSTMDCRKAAPTDIVVLNQADLGMYLRSEDRTPASAL 184
            MRPLTEEET QVFEKLAKFIG NIKQLIDAP+ETHCFRLQNDRVYYVSE+VMRLATNVAR+NLASLGVCIGKFTHHKNFH+HISCLEYLGKYA+HKVW+KPSSEMSFLYGNH+LK GLGRITENT+NGAGVVVYNMSDTPIGFGLAARST+DCRKAAPTDIVVLNQADLGMYLRSE++TPASAL
Sbjct:    1 MRPLTEEETTQVFEKLAKFIGTNIKQLIDAPEETHCFRLQNDRVYYVSERVMRLATNVARDNLASLGVCIGKFTHHKNFHIHISCLEYLGKYAKHKVWIKPSSEMSFLYGNHVLKTGLGRITENTDNGAGVVVYNMSDTPIGFGLAARSTIDCRKAAPTDIVVLNQADLGMYLRSEEKTPASAL 184          
BLAST of Gcaud1461.t1 vs. uniprot
Match: R7QHT0_CHOCR (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHT0_CHOCR)

HSP 1 Score: 323 bits (827), Expect = 5.460e-111
Identity = 153/184 (83.15%), Postives = 171/184 (92.93%), Query Frame = 0
Query:    1 MRPLTEEETIQVFEKLAKFIGPNIKQLIDAPDETHCFRLQNDRVYYVSEKVMRLATNVARENLASLGVCIGKFTHHKNFHVHISCLEYLGKYARHKVWVKPSSEMSFLYGNHILKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARSTMDCRKAAPTDIVVLNQADLGMYLRSEDRTPASAL 184
            MRPLTEEET QVFEKLAK+IGPN+K+LID PD ++CFRLQ DRVYYVSE+ MRLAT+VAR++LASLGVC GKFTHHKNFH+HISCLEYLGKYA HKVW+KPSSEMSFLYGNH+LK GLGRITENTE+GAGVVVYNM D  +GFGL ARST++CRKAAPTDIVVL+QADLGMYLRSED +PASAL
Sbjct:    1 MRPLTEEETTQVFEKLAKYIGPNLKKLIDTPDGSYCFRLQKDRVYYVSERTMRLATHVARDSLASLGVCFGKFTHHKNFHLHISCLEYLGKYATHKVWIKPSSEMSFLYGNHVLKTGLGRITENTEHGAGVVVYNMGDMALGFGLTARSTVECRKAAPTDIVVLHQADLGMYLRSEDSSPASAL 184          
BLAST of Gcaud1461.t1 vs. uniprot
Match: UPI001E1E0B23 (LOW QUALITY PROTEIN: 60S ribosome subunit biogenesis protein nip7-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E0B23)

HSP 1 Score: 306 bits (785), Expect = 1.010e-104
Identity = 145/174 (83.33%), Postives = 159/174 (91.38%), Query Frame = 0
Query:    1 MRPLTEEETIQVFEKLAKFIGPNIKQLIDAPDETHCFRLQNDRVYYVSEKVMRLATNVARENLASLGVCIGKFTHHKNFHVHISCLEYLGKYARHKVWVKPSSEMSFLYGNHILKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARSTMDCRKAAPTDIVVLNQADLGMYLR 174
            MRPLTE+ET +VFEKLAKFIGPN+KQL+D   E HCFRLQ DRVYYVSE+VMR ATNV R+NLASLGVC GKFTHHKNFH+HISCL+YL +YA+HKVWVKPSSEMSFLYGNHI KAGLGRITENT  G GVVVYNMSD P+GFGLAARST+DCRKAAPTDIVVL+QAD+GMYLR
Sbjct:    1 MRPLTEDETTKVFEKLAKFIGPNLKQLLDGAGEPHCFRLQKDRVYYVSEEVMRRATNVGRDNLASLGVCFGKFTHHKNFHLHISCLDYLARYAKHKVWVKPSSEMSFLYGNHIXKAGLGRITENTPQGTGVVVYNMSDMPMGFGLAARSTLDCRKAAPTDIVVLHQADMGMYLR 174          
BLAST of Gcaud1461.t1 vs. uniprot
Match: A0A5J4Z3T1_PORPP (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3T1_PORPP)

HSP 1 Score: 268 bits (684), Expect = 3.230e-89
Identity = 130/184 (70.65%), Postives = 149/184 (80.98%), Query Frame = 0
Query:    1 MRPLTEEETIQVFEKLAKFIGPNIKQLIDAPDETHCFRLQNDRVYYVSEKVMRLATNVARENLASLGVCIGKFTHHKNFHVHISCLEYLGKYARHKVWVKPSSEMSFLYGNHILKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARSTMDCRKAAPTDIVVLNQADLGMYLRSEDRTPASAL 184
            MRPLTEEET QVFEKLAK++G N+KQLID   E  CFRLQ DRVYYV E VMR AT  AR  +A+LGVC+GKFTHH NFH+HI+ L YL KYA++KVWVKPSSEMS++YGNH+LKAG+GR T+ T  G GVVVY+M D PIGFG+ ARST D RKA P DI+VLNQAD+G YLR ED  PASAL
Sbjct:    1 MRPLTEEETRQVFEKLAKYVGSNLKQLIDTGSEAWCFRLQKDRVYYVRENVMRHATTYARSKVAALGVCVGKFTHHSNFHLHITFLPYLAKYAKYKVWVKPSSEMSYMYGNHVLKAGVGRFTD-TPQGQGVVVYSMGDIPIGFGITARSTHDTRKANPMDIIVLNQADVGQYLRDEDSNPASAL 183          
BLAST of Gcaud1461.t1 vs. uniprot
Match: A7SFI9_NEMVE (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SFI9_NEMVE)

HSP 1 Score: 254 bits (650), Expect = 4.380e-84
Identity = 121/177 (68.36%), Postives = 144/177 (81.36%), Query Frame = 0
Query:    1 MRPLTEEETIQVFEKLAKFIGPNIKQLIDAPDETHCFRLQNDRVYYVSEKVMRLATNVARENLASLGVCIGKFTHHKNFHVHISCLEYLGKYARHKVWVKPSSEMSFLYGNHILKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARSTMDCRKAAPTDIVVLNQADLGMYLRSED 177
            MRPLTEEET  VFEKLAK+IG NIK LID PD  +CFRL  DRVYYVSE +MR ATNVAR+NL SLG C+GKFT  + F +HI+ L++L  YA++KVWVKP +E +FLYGNH+ K+GLGRITENT    GVV+Y+MSD+P+GFG  ARST DCRKA PTD+VV +QAD+G YLRSED
Sbjct:    1 MRPLTEEETKVVFEKLAKYIGENIKLLIDRPDGNYCFRLHKDRVYYVSELIMRRATNVARDNLISLGTCLGKFTKSEKFKLHITALDFLAPYAKYKVWVKPGAEQTFLYGNHVTKSGLGRITENTPQYQGVVIYSMSDSPLGFGATARSTQDCRKANPTDVVVFHQADVGEYLRSED 177          
BLAST of Gcaud1461.t1 vs. uniprot
Match: A0A2B4S4V2_STYPI (60S ribosome subunit biogenesis protein NIP7 homolog n=3 Tax=Scleractinia TaxID=6125 RepID=A0A2B4S4V2_STYPI)

HSP 1 Score: 252 bits (643), Expect = 5.090e-83
Identity = 119/177 (67.23%), Postives = 143/177 (80.79%), Query Frame = 0
Query:    1 MRPLTEEETIQVFEKLAKFIGPNIKQLIDAPDETHCFRLQNDRVYYVSEKVMRLATNVARENLASLGVCIGKFTHHKNFHVHISCLEYLGKYARHKVWVKPSSEMSFLYGNHILKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARSTMDCRKAAPTDIVVLNQADLGMYLRSED 177
            MRPLTEEET  VFEKLAK+IG NIK LID PD  +CFRL  DRVYYVSE+ MR ATNVARENL S+G CIGKFT  + F +HI+ L+++  YA++K+WVKP+ E SFLYGNHILK+GLGRITENT    GV+VY+M+D P+GFG  +RST DCR+A PTDI+  +QAD+G YLRSED
Sbjct:    1 MRPLTEEETQIVFEKLAKYIGDNIKLLIDRPDGNYCFRLHEDRVYYVSEETMRKATNVARENLISIGTCIGKFTKTRKFRLHITALDFMAPYAKYKIWVKPAGEQSFLYGNHILKSGLGRITENTPQYQGVIVYSMNDLPLGFGATSRSTQDCRRANPTDIICFHQADVGEYLRSED 177          
BLAST of Gcaud1461.t1 vs. uniprot
Match: F6YGD8_MONDO (60S ribosome subunit biogenesis protein NIP7 homolog n=8 Tax=Metatheria TaxID=9263 RepID=F6YGD8_MONDO)

HSP 1 Score: 249 bits (636), Expect = 5.920e-82
Identity = 114/177 (64.41%), Postives = 143/177 (80.79%), Query Frame = 0
Query:    1 MRPLTEEETIQVFEKLAKFIGPNIKQLIDAPDETHCFRLQNDRVYYVSEKVMRLATNVARENLASLGVCIGKFTHHKNFHVHISCLEYLGKYARHKVWVKPSSEMSFLYGNHILKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARSTMDCRKAAPTDIVVLNQADLGMYLRSED 177
            MRPLTEEET  +F+KL+K+IG NI+ L+D PD T+CFRL  DRVYYVSEK+++LA N++RENL SLG C GKFT  + F +HI+ L+YL  YA+HKVWVKP +E SFLYGNH+LK+GLGRITENT    G+VVY+M+D P+GFG+AA+ST DCRK  P  IVV +QAD+G Y+R ED
Sbjct:    1 MRPLTEEETRTLFQKLSKYIGENIQLLVDRPDGTYCFRLHKDRVYYVSEKILKLAVNISRENLVSLGTCFGKFTKTQKFRLHITALDYLAPYAKHKVWVKPGAEQSFLYGNHVLKSGLGRITENTNQYQGLVVYSMADVPLGFGVAAKSTQDCRKVDPMSIVVFHQADIGEYVRHED 177          
BLAST of Gcaud1461.t1 vs. uniprot
Match: NIP7_DANRE (60S ribosome subunit biogenesis protein NIP7 homolog n=66 Tax=Gnathostomata TaxID=7776 RepID=NIP7_DANRE)

HSP 1 Score: 246 bits (629), Expect = 6.880e-81
Identity = 114/177 (64.41%), Postives = 145/177 (81.92%), Query Frame = 0
Query:    1 MRPLTEEETIQVFEKLAKFIGPNIKQLIDAPDETHCFRLQNDRVYYVSEKVMRLATNVARENLASLGVCIGKFTHHKNFHVHISCLEYLGKYARHKVWVKPSSEMSFLYGNHILKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARSTMDCRKAAPTDIVVLNQADLGMYLRSED 177
            MRPLT+EET  +FEKL+K+IG NIK LID PD T+CFRL NDRVYY+SEK+++LATNV+R+ L S+G C GKFT  + F +HI+ L++L  YA+ KVWVKP SE SFLYGNHI+K+GLGRITENT+   GV+VY+M+D P+GFG+AAR+T +CRK  P  IVV +QAD+G Y+RSED
Sbjct:    1 MRPLTDEETKTMFEKLSKYIGENIKLLIDRPDGTYCFRLHNDRVYYMSEKILKLATNVSRDKLVSVGTCFGKFTKTQKFRLHITALDFLAPYAKFKVWVKPGSEQSFLYGNHIMKSGLGRITENTDKYQGVLVYSMADVPLGFGVAARTTQECRKVDPMAIVVFHQADIGEYIRSED 177          
BLAST of Gcaud1461.t1 vs. uniprot
Match: NIP7_XENTR (60S ribosome subunit biogenesis protein NIP7 homolog n=15 Tax=Sarcopterygii TaxID=8287 RepID=NIP7_XENTR)

HSP 1 Score: 246 bits (628), Expect = 9.770e-81
Identity = 113/177 (63.84%), Postives = 143/177 (80.79%), Query Frame = 0
Query:    1 MRPLTEEETIQVFEKLAKFIGPNIKQLIDAPDETHCFRLQNDRVYYVSEKVMRLATNVARENLASLGVCIGKFTHHKNFHVHISCLEYLGKYARHKVWVKPSSEMSFLYGNHILKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARSTMDCRKAAPTDIVVLNQADLGMYLRSED 177
            MRPLT+EET  +FEKL+K+IG NIK L+D PD T+CFRL NDRVYYVSE++++LATN+AR+ L SLG C GKFT    F +H++ L+YL  YA++KVWVKP +E SFLYGNH+LK+GLGRITENT    GVVVY+M+D P+GFG+AA+ST +CRK  P  IVV +QAD+G Y+R ED
Sbjct:    1 MRPLTDEETKAMFEKLSKYIGENIKLLVDRPDGTYCFRLHNDRVYYVSERILKLATNIARDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEYIRHED 177          
BLAST of Gcaud1461.t1 vs. uniprot
Match: A0A3B4DBE2_PYGNA (60S ribosome subunit biogenesis protein NIP7 homolog n=2 Tax=Pygocentrus nattereri TaxID=42514 RepID=A0A3B4DBE2_PYGNA)

HSP 1 Score: 247 bits (631), Expect = 2.590e-80
Identity = 113/177 (63.84%), Postives = 146/177 (82.49%), Query Frame = 0
Query:    1 MRPLTEEETIQVFEKLAKFIGPNIKQLIDAPDETHCFRLQNDRVYYVSEKVMRLATNVARENLASLGVCIGKFTHHKNFHVHISCLEYLGKYARHKVWVKPSSEMSFLYGNHILKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARSTMDCRKAAPTDIVVLNQADLGMYLRSED 177
            MRPLTEEET  +FEKL+K+IG NIK L+D PD T+CFRL +DRVYY+SEK++RLATN++R+ L S+G C GKFT  + F +HI+ L++L  YA++KVWVKP +E SFLYGNHI+K+GLGRITENT    GVVVY+M+D P+GFG+AA++T +CRKA P  IVV +QAD+G Y+RSED
Sbjct:   62 MRPLTEEETKTMFEKLSKYIGANIKLLVDRPDGTYCFRLHHDRVYYISEKILRLATNMSRDKLVSVGTCFGKFTKTQKFRLHITALDFLAPYAKYKVWVKPGAEQSFLYGNHIMKSGLGRITENTPQYQGVVVYSMADVPLGFGVAAKTTQECRKADPMSIVVFHQADIGEYIRSED 238          
The following BLAST results are available for this feature:
BLAST of Gcaud1461.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IIY3_9FLOR6.000e-12492.3960S ribosome subunit biogenesis protein NIP7 homol... [more]
R7QHT0_CHOCR5.460e-11183.1560S ribosome subunit biogenesis protein NIP7 homol... [more]
UPI001E1E0B231.010e-10483.33LOW QUALITY PROTEIN: 60S ribosome subunit biogenes... [more]
A0A5J4Z3T1_PORPP3.230e-8970.6560S ribosome subunit biogenesis protein NIP7 homol... [more]
A7SFI9_NEMVE4.380e-8468.3660S ribosome subunit biogenesis protein NIP7 homol... [more]
A0A2B4S4V2_STYPI5.090e-8367.2360S ribosome subunit biogenesis protein NIP7 homol... [more]
F6YGD8_MONDO5.920e-8264.4160S ribosome subunit biogenesis protein NIP7 homol... [more]
NIP7_DANRE6.880e-8164.4160S ribosome subunit biogenesis protein NIP7 homol... [more]
NIP7_XENTR9.770e-8163.8460S ribosome subunit biogenesis protein NIP7 homol... [more]
A0A3B4DBE2_PYGNA2.590e-8063.8460S ribosome subunit biogenesis protein NIP7 homol... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002478PUA domainSMARTSM00359pua_5coord: 95..170
e-value: 4.3E-13
score: 59.5
IPR016686Ribosome biogenesis factor, NIP7PIRSFPIRSF017190NIP7coord: 1..179
e-value: 4.4E-82
score: 271.8
NoneNo IPR availableGENE3D3.10.450.220coord: 1..93
e-value: 2.7E-41
score: 141.5
NoneNo IPR availablePANTHERPTHR23415CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7coord: 1..178
NoneNo IPR availablePANTHERPTHR23415:SF460S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOGcoord: 1..178
NoneNo IPR availablePROSITEPS50890PUAcoord: 94..170
score: 14.27153
NoneNo IPR availableSUPERFAMILY88802Pre-PUA domaincoord: 1..94
IPR005155UPF0113, PUA domainPFAMPF03657UPF0113coord: 96..175
e-value: 2.1E-23
score: 82.4
IPR040598UPF0113, pre-PUA domainPFAMPF17833UPF0113_Ncoord: 2..83
e-value: 7.3E-30
score: 103.3
IPR036974PUA domain superfamilyGENE3D2.30.130.10PUA domaincoord: 94..181
e-value: 2.9E-38
score: 131.6
IPR015947PUA-like superfamilySUPERFAMILY88697PUA domain-likecoord: 95..170

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_566_length_21798_cov_4.589994contigNODE_566_length_21798_cov_4.589994:13639..14193 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1461.t1Gcaud1461.t1Gracilaria caudata M_176_S67 malemRNANODE_566_length_21798_cov_4.589994 13639..14193 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1461.t1 ID=Gcaud1461.t1|Name=Gcaud1461.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=185bp
MRPLTEEETIQVFEKLAKFIGPNIKQLIDAPDETHCFRLQNDRVYYVSEK
VMRLATNVARENLASLGVCIGKFTHHKNFHVHISCLEYLGKYARHKVWVK
PSSEMSFLYGNHILKAGLGRITENTENGAGVVVYNMSDTPIGFGLAARST
MDCRKAAPTDIVVLNQADLGMYLRSEDRTPASAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002478PUA
IPR016686Ribosomal_synth_fac_NIP7
IPR005155UPF0113_PUA
IPR040598UPF0113_N
IPR036974PUA_sf
IPR015947PUA-like_sf