Gcaud1459.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1459.t1
Unique NameGcaud1459.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length182
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_566_length_21798_cov_4.589994contigNODE_566_length_21798_cov_4.589994:11550..12534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog529818.AMSG_04121T0
Preferred nameNAA20
PFAMsAcetyltransf_1
Max annot lvl2759|Eukaryota
KEGG koko:K17972
GOsGO:0000001,GO:0003674,GO:0003824,GO:0004596,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006325,GO:0006464,GO:0006473,GO:0006474,GO:0006475,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006996,GO:0007005,GO:0008080,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010498,GO:0010941,GO:0016043,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0017196,GO:0018193,GO:0018205,GO:0018206,GO:0018393,GO:0018394,GO:0019538,GO:0019941,GO:0030163,GO:0030433,GO:0031248,GO:0031365,GO:0031414,GO:0031416,GO:0032956,GO:0032970,GO:0032991,GO:0033043,GO:0033554,GO:0034212,GO:0034976,GO:0036211,GO:0036503,GO:0042221,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043523,GO:0043524,GO:0043543,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048308,GO:0048311,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051276,GO:0051493,GO:0051603,GO:0051604,GO:0051640,GO:0051641,GO:0051646,GO:0051716,GO:0060548,GO:0065007,GO:0071704,GO:0071840,GO:1901214,GO:1901215,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1902493,GO:1902494,GO:1990234
Evalue2.93e-56
EggNOG OGsCOG0456@1|root,KOG3234@2759|Eukaryota
EC2.3.1.254
DescriptionN-terminal peptidyl-methionine acetylation
COG categoryT
BRITEko00000,ko01000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1459Gcaud1459Gracilaria caudata M_176_S67 malegeneNODE_566_length_21798_cov_4.589994 11550..12534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1459.t1Gcaud1459.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_566_length_21798_cov_4.589994 11550..12534 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1459.t1.stop1Gcaud1459.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_566_length_21798_cov_4.589994 11550..11552 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1459.t1.CDS1Gcaud1459.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_566_length_21798_cov_4.589994 11550..11975 -
Gcaud1459.t1.CDS2Gcaud1459.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_566_length_21798_cov_4.589994 12089..12095 -
Gcaud1459.t1.CDS3Gcaud1459.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_566_length_21798_cov_4.589994 12422..12534 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1459.t1.exon1Gcaud1459.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_566_length_21798_cov_4.589994 11550..11975 -
Gcaud1459.t1.exon2Gcaud1459.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_566_length_21798_cov_4.589994 12089..12095 -
Gcaud1459.t1.exon3Gcaud1459.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_566_length_21798_cov_4.589994 12422..12534 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1459.t1.intron1Gcaud1459.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_566_length_21798_cov_4.589994 11976..12088 -
Gcaud1459.t1.intron2Gcaud1459.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_566_length_21798_cov_4.589994 12096..12421 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1459.t1.start1Gcaud1459.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_566_length_21798_cov_4.589994 12532..12534 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1459.t1 ID=Gcaud1459.t1|Name=Gcaud1459.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=182bp
MIPQTAISSSGANLKFLIKIEYFSSHGVLLGTRPTGLDDQYMLRWPEFQQ
TVTSPDGTMMAYVIGKAEGRSREWHGHVSAVTVAPEYRRLGLASKLMNFT
ESLSDETYNCYFVDLFVRKSNSLAISMYKKMGYVVYRTILNYYGGDEDAY
DMRKALSRDKDRSSVIPLEKAVRAEDVPLTM*
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spliced messenger RNA

>Gcaud1459.t1 ID=Gcaud1459.t1|Name=Gcaud1459.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=546bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:11550..12534- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCCACAAACGGCAATTTCTAGTTCCGGAGCAAATCTTAAGTTTTT
AATTAAAATCGAATACTTTTCAAGTCATGGAGTCCTGCTTGGGACCAGAC
CGACTGGGCTCGATGATCAGTACATGTTGAGATGGCCTGAATTTCAGCAA
ACTGTAACTTCACCCGATGGAACAATGATGGCGTACGTCATTGGCAAAGC
GGAAGGACGCTCTCGCGAATGGCACGGGCACGTATCAGCTGTAACTGTTG
CTCCCGAGTATCGTAGGTTGGGATTGGCATCGAAGTTAATGAACTTTACT
GAGAGTTTATCGGACGAGACGTATAATTGCTACTTCGTTGATTTATTCGT
GCGCAAGTCTAACTCTCTGGCCATCTCAATGTATAAGAAGATGGGTTATG
TTGTATATCGCACAATTTTGAATTACTACGGAGGGGACGAAGATGCGTAT
GACATGCGAAAAGCACTCAGTCGCGACAAAGATCGTTCATCCGTAATACC
GCTGGAGAAGGCCGTTAGAGCAGAAGACGTTCCTCTTACGATGTAA
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protein sequence of Gcaud1459.t1

>Gcaud1459.t1 ID=Gcaud1459.t1|Name=Gcaud1459.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=182bp
MIPQTAISSSGANLKFLIKIEYFSSHGVLLGTRPTGLDDQYMLRWPEFQQ
TVTSPDGTMMAYVIGKAEGRSREWHGHVSAVTVAPEYRRLGLASKLMNFT
ESLSDETYNCYFVDLFVRKSNSLAISMYKKMGYVVYRTILNYYGGDEDAY
DMRKALSRDKDRSSVIPLEKAVRAEDVPLTM*
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mRNA from alignment at NODE_566_length_21798_cov_4.589994:11550..12534-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1459.t1 ID=Gcaud1459.t1|Name=Gcaud1459.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=985bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:11550..12534- (Gracilaria caudata M_176_S67 male)
ATGATTCCACAAACGGCAATTTCTAGTTCCGGAGCAAATCTTAAGTTTTT
AATTAAAATCGAATACTTTTCAAGTCATGGAGTCCTGCTTGGGACCAGAC
CGACTGGGCTCGAGTTTGCATCCACGGCGTCCTGCACATTCTCTCTATCA
TACAGAAAGAAGTCTCAACAGAAAGAAGGTAGAACGCCACCTGTAGTGCC
GTCATACCTTTCCAGATAAGGCCAGCGGCCAAAGAAGGTTTTCCACCCTC
TCGATTCAACTACGGAAGTCACCAACAACCCTTTCATCTGAAAGCTTTTC
TATATCTTACTTCAAAGTGATACCGAAGGAGCTTCACTGCGTTACGTTGG
GACAAGCAGCGTTTCTATTTTAATCCACACAAATCTAGGCTGCGGTAACC
GTCTCATTTACCATTCGTTGTTTCAACTCGTCTTGCCAGTGATCAGGTTC
GTTGAAAATGTCGTCAACACGACGATTTCGACCTTTTGATCTGTTCCATG
TGAACCCTGTCAATCTAGACAAGCTCACAGAGACATATAACCTACATTTC
TATTTCCAGTACATGTTGAGATGGCCTGAATTTCAGCAAACTGTAACTTC
ACCCGATGGAACAATGATGGCGTACGTCATTGGCAAAGCGGAAGGACGCT
CTCGCGAATGGCACGGGCACGTATCAGCTGTAACTGTTGCTCCCGAGTAT
CGTAGGTTGGGATTGGCATCGAAGTTAATGAACTTTACTGAGAGTTTATC
GGACGAGACGTATAATTGCTACTTCGTTGATTTATTCGTGCGCAAGTCTA
ACTCTCTGGCCATCTCAATGTATAAGAAGATGGGTTATGTTGTATATCGC
ACAATTTTGAATTACTACGGAGGGGACGAAGATGCGTATGACATGCGAAA
AGCACTCAGTCGCGACAAAGATCGTTCATCCGTAATACCGCTGGAGAAGG
CCGTTAGAGCAGAAGACGTTCCTCTTACGATGTAA
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Coding sequence (CDS) from alignment at NODE_566_length_21798_cov_4.589994:11550..12534-

>Gcaud1459.t1 ID=Gcaud1459.t1|Name=Gcaud1459.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=546bp|location=Sequence derived from alignment at NODE_566_length_21798_cov_4.589994:11550..12534- (Gracilaria caudata M_176_S67 male)
ATGATTCCACAAACGGCAATTTCTAGTTCCGGAGCAAATCTTAAGTTTTT
AATTAAAATCGAATACTTTTCAAGTCATGGAGTCCTGCTTGGGACCAGAC
CGACTGGGCTCGATGATCAGTACATGTTGAGATGGCCTGAATTTCAGCAA
ACTGTAACTTCACCCGATGGAACAATGATGGCGTACGTCATTGGCAAAGC
GGAAGGACGCTCTCGCGAATGGCACGGGCACGTATCAGCTGTAACTGTTG
CTCCCGAGTATCGTAGGTTGGGATTGGCATCGAAGTTAATGAACTTTACT
GAGAGTTTATCGGACGAGACGTATAATTGCTACTTCGTTGATTTATTCGT
GCGCAAGTCTAACTCTCTGGCCATCTCAATGTATAAGAAGATGGGTTATG
TTGTATATCGCACAATTTTGAATTACTACGGAGGGGACGAAGATGCGTAT
GACATGCGAAAAGCACTCAGTCGCGACAAAGATCGTTCATCCGTAATACC
GCTGGAGAAGGCCGTTAGAGCAGAAGACGTTCCTCTTACGATGTAA
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