Gcaud2668.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2668.t1
Unique NameGcaud2668.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length420
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_558_length_22134_cov_4.093136contigNODE_558_length_22134_cov_4.093136:18357..19975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703095.1
PFAMsMg_trans_NIPA
Max annot lvl2759|Eukaryota
Evalue1.19e-103
EggNOG OGsKOG2922@1|root,KOG2922@2759|Eukaryota
Descriptionmagnesium ion transmembrane transporter activity
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2668Gcaud2668Gracilaria caudata M_176_S67 malegeneNODE_558_length_22134_cov_4.093136 18357..19975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2668.t1Gcaud2668.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_558_length_22134_cov_4.093136 18357..19975 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2668.t1.start1Gcaud2668.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_558_length_22134_cov_4.093136 18357..18359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2668.t1.CDS1Gcaud2668.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_558_length_22134_cov_4.093136 18357..18442 +
Gcaud2668.t1.CDS2Gcaud2668.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_558_length_22134_cov_4.093136 18562..18565 +
Gcaud2668.t1.CDS3Gcaud2668.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_558_length_22134_cov_4.093136 18645..19808 +
Gcaud2668.t1.CDS4Gcaud2668.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_558_length_22134_cov_4.093136 19970..19975 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2668.t1.exon1Gcaud2668.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_558_length_22134_cov_4.093136 18357..18442 +
Gcaud2668.t1.exon2Gcaud2668.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_558_length_22134_cov_4.093136 18562..18565 +
Gcaud2668.t1.exon3Gcaud2668.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_558_length_22134_cov_4.093136 18645..19808 +
Gcaud2668.t1.exon4Gcaud2668.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_558_length_22134_cov_4.093136 19970..19975 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2668.t1.intron1Gcaud2668.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_558_length_22134_cov_4.093136 18443..18561 +
Gcaud2668.t1.intron2Gcaud2668.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_558_length_22134_cov_4.093136 18566..18644 +
Gcaud2668.t1.intron3Gcaud2668.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_558_length_22134_cov_4.093136 19809..19969 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2668.t1.stop1Gcaud2668.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_558_length_22134_cov_4.093136 19973..19975 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2668.t1 ID=Gcaud2668.t1|Name=Gcaud2668.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=420bp
MFQHINLFSSLGWKVGSWWPGIVLAILGSVLNNMGTNVMKLAINRRLLLP
PDERPRLSRIPMWVSGFAMFTLGTAMSFGAFKFAAQSLLSGLGSVQFLSQ
VFFSRFILHEKIERYAYAGVALIITGCVFIVIFGAHGTKNYRPEELAALY
GRSEYVCYLLGAGFLACFVSIAYSSMKQKIMRDRGIGRFDIAKSNIRERQ
VLAVFFSIKSALFGTQAVVLAKSLSMLLIQALHPNPAYSNPLLSYQTYFI
LMGFIAAATYWVTRLNHGLRLFEAVYLIPMMQICWILFSTIAGGIYYEEF
IGFGRKEYGAYAVGFVCVLIGVAMLCPRDDANAKSLNAADVIYEIVSEEN
PLVSPQPSKFQPFNEEDETEAGGRHYRGLRTEESDEDHKPFSLEDEPAEN
EGQGLRPEEAPLKAEKSPL*
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spliced messenger RNA

>Gcaud2668.t1 ID=Gcaud2668.t1|Name=Gcaud2668.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1260bp|location=Sequence derived from alignment at NODE_558_length_22134_cov_4.093136:18357..19975+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCAACATATCAACTTATTTTCGAGTCTGGGATGGAAGGTTGGCAG
CTGGTGGCCGGGCATTGTGCTCGCTATTCTGGGAAGTGTCCTCAATAACA
TGGGCACAAATGTCATGAAGCTTGCAATCAACCGCAGGTTACTTCTCCCC
CCAGACGAGCGCCCTCGTCTCTCGCGTATCCCCATGTGGGTTTCTGGTTT
CGCCATGTTCACTCTTGGCACCGCAATGTCCTTCGGTGCCTTCAAATTTG
CTGCACAATCCCTCCTTTCCGGTCTTGGTTCCGTTCAATTTCTTTCGCAA
GTCTTCTTTTCTCGCTTCATTCTCCACGAAAAGATTGAAAGATATGCGTA
TGCAGGCGTAGCGCTCATCATAACTGGCTGTGTTTTCATAGTCATTTTCG
GTGCACATGGCACCAAAAATTATCGACCAGAAGAACTGGCAGCTCTATAT
GGGCGATCCGAGTATGTCTGCTACCTGCTTGGGGCCGGCTTTCTTGCGTG
CTTTGTCTCAATTGCATACTCGTCCATGAAGCAAAAGATCATGCGCGATC
GAGGAATAGGCCGATTCGATATCGCCAAATCTAACATTCGTGAGCGTCAA
GTTCTTGCCGTGTTTTTTTCGATCAAGTCTGCACTTTTCGGCACACAAGC
TGTTGTGCTTGCCAAATCACTTTCGATGCTGCTAATCCAAGCGCTTCACC
CAAATCCAGCTTATTCGAATCCTCTTCTATCTTATCAAACTTACTTCATA
CTCATGGGCTTCATCGCCGCGGCAACTTACTGGGTAACGAGATTAAACCA
CGGTCTCCGACTGTTTGAGGCCGTTTATCTCATCCCGATGATGCAAATAT
GTTGGATTCTCTTCAGCACCATCGCGGGGGGAATCTATTACGAAGAGTTT
ATCGGGTTTGGTAGGAAAGAATACGGCGCATATGCTGTCGGTTTCGTTTG
TGTACTTATTGGAGTGGCTATGCTGTGCCCACGAGATGATGCCAATGCCA
AGTCCCTCAATGCCGCCGATGTTATTTATGAAATTGTGTCCGAGGAAAAC
CCACTTGTGTCTCCTCAGCCGTCGAAATTCCAGCCGTTCAACGAGGAAGA
TGAAACTGAGGCTGGTGGTCGGCACTATCGAGGTCTTCGCACGGAAGAAT
CGGACGAGGATCACAAGCCATTTTCTTTAGAAGACGAACCGGCTGAAAAC
GAAGGACAAGGGTTGAGGCCTGAGGAAGCACCATTGAAGGCTGAAAAAAG
TCCTCTATGA
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protein sequence of Gcaud2668.t1

>Gcaud2668.t1 ID=Gcaud2668.t1|Name=Gcaud2668.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=420bp
MFQHINLFSSLGWKVGSWWPGIVLAILGSVLNNMGTNVMKLAINRRLLLP
PDERPRLSRIPMWVSGFAMFTLGTAMSFGAFKFAAQSLLSGLGSVQFLSQ
VFFSRFILHEKIERYAYAGVALIITGCVFIVIFGAHGTKNYRPEELAALY
GRSEYVCYLLGAGFLACFVSIAYSSMKQKIMRDRGIGRFDIAKSNIRERQ
VLAVFFSIKSALFGTQAVVLAKSLSMLLIQALHPNPAYSNPLLSYQTYFI
LMGFIAAATYWVTRLNHGLRLFEAVYLIPMMQICWILFSTIAGGIYYEEF
IGFGRKEYGAYAVGFVCVLIGVAMLCPRDDANAKSLNAADVIYEIVSEEN
PLVSPQPSKFQPFNEEDETEAGGRHYRGLRTEESDEDHKPFSLEDEPAEN
EGQGLRPEEAPLKAEKSPL*
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mRNA from alignment at NODE_558_length_22134_cov_4.093136:18357..19975+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2668.t1 ID=Gcaud2668.t1|Name=Gcaud2668.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1619bp|location=Sequence derived from alignment at NODE_558_length_22134_cov_4.093136:18357..19975+ (Gracilaria caudata M_176_S67 male)
ATGTTTCAACATATCAACTTATTTTCGAGTCTGGGATGGAAGGTTGGCAG
CTGGTGGCCGGGCATTGTGCTCGCTATTCTGGGAAGGTATGCTCTCTCCT
CCCTTTGAGAAGCGCGAAGCACAAGCTATTGCAAATGTTTGCTTGCTGAC
ACTCAAGCCGTCGTCCTTTGAAATCACTGTCGTTCCTTTTTCTGTGTCAC
ATCAGTGTCGTAAGTTTCTAATCTTCGTACCGTGCGACCGTCGCGCCAAA
AAATATGCTCCCCAGTCTAACAAACCCGTCGTTTAAAGCTCAATAACATG
GGCACAAATGTCATGAAGCTTGCAATCAACCGCAGGTTACTTCTCCCCCC
AGACGAGCGCCCTCGTCTCTCGCGTATCCCCATGTGGGTTTCTGGTTTCG
CCATGTTCACTCTTGGCACCGCAATGTCCTTCGGTGCCTTCAAATTTGCT
GCACAATCCCTCCTTTCCGGTCTTGGTTCCGTTCAATTTCTTTCGCAAGT
CTTCTTTTCTCGCTTCATTCTCCACGAAAAGATTGAAAGATATGCGTATG
CAGGCGTAGCGCTCATCATAACTGGCTGTGTTTTCATAGTCATTTTCGGT
GCACATGGCACCAAAAATTATCGACCAGAAGAACTGGCAGCTCTATATGG
GCGATCCGAGTATGTCTGCTACCTGCTTGGGGCCGGCTTTCTTGCGTGCT
TTGTCTCAATTGCATACTCGTCCATGAAGCAAAAGATCATGCGCGATCGA
GGAATAGGCCGATTCGATATCGCCAAATCTAACATTCGTGAGCGTCAAGT
TCTTGCCGTGTTTTTTTCGATCAAGTCTGCACTTTTCGGCACACAAGCTG
TTGTGCTTGCCAAATCACTTTCGATGCTGCTAATCCAAGCGCTTCACCCA
AATCCAGCTTATTCGAATCCTCTTCTATCTTATCAAACTTACTTCATACT
CATGGGCTTCATCGCCGCGGCAACTTACTGGGTAACGAGATTAAACCACG
GTCTCCGACTGTTTGAGGCCGTTTATCTCATCCCGATGATGCAAATATGT
TGGATTCTCTTCAGCACCATCGCGGGGGGAATCTATTACGAAGAGTTTAT
CGGGTTTGGTAGGAAAGAATACGGCGCATATGCTGTCGGTTTCGTTTGTG
TACTTATTGGAGTGGCTATGCTGTGCCCACGAGATGATGCCAATGCCAAG
TCCCTCAATGCCGCCGATGTTATTTATGAAATTGTGTCCGAGGAAAACCC
ACTTGTGTCTCCTCAGCCGTCGAAATTCCAGCCGTTCAACGAGGAAGATG
AAACTGAGGCTGGTGGTCGGCACTATCGAGGTCTTCGCACGGAAGAATCG
GACGAGGATCACAAGCCATTTTCTTTAGAAGACGAACCGGCTGAAAACGA
AGGACAAGGGTTGAGGCCTGAGGAAGCACCATTGAAGGCTGAAAAAAGTC
CTGTACGTAGTGAACGAGAGGAAGTAGGCCAAGAAGGGATGGTTTAACAT
TCAGACGTGGGTTACTAATAGCGTGCGAGCAGATTAATGGTGACTGACTG
GAAAGGCGCGAGCATCCTTGATTTTTGTTCCTTTCGGTGCACGAGTTGCT
TCAACTACGGTAGCTATGA
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Coding sequence (CDS) from alignment at NODE_558_length_22134_cov_4.093136:18357..19975+

>Gcaud2668.t1 ID=Gcaud2668.t1|Name=Gcaud2668.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1260bp|location=Sequence derived from alignment at NODE_558_length_22134_cov_4.093136:18357..19975+ (Gracilaria caudata M_176_S67 male)
ATGTTTCAACATATCAACTTATTTTCGAGTCTGGGATGGAAGGTTGGCAG
CTGGTGGCCGGGCATTGTGCTCGCTATTCTGGGAAGTGTCCTCAATAACA
TGGGCACAAATGTCATGAAGCTTGCAATCAACCGCAGGTTACTTCTCCCC
CCAGACGAGCGCCCTCGTCTCTCGCGTATCCCCATGTGGGTTTCTGGTTT
CGCCATGTTCACTCTTGGCACCGCAATGTCCTTCGGTGCCTTCAAATTTG
CTGCACAATCCCTCCTTTCCGGTCTTGGTTCCGTTCAATTTCTTTCGCAA
GTCTTCTTTTCTCGCTTCATTCTCCACGAAAAGATTGAAAGATATGCGTA
TGCAGGCGTAGCGCTCATCATAACTGGCTGTGTTTTCATAGTCATTTTCG
GTGCACATGGCACCAAAAATTATCGACCAGAAGAACTGGCAGCTCTATAT
GGGCGATCCGAGTATGTCTGCTACCTGCTTGGGGCCGGCTTTCTTGCGTG
CTTTGTCTCAATTGCATACTCGTCCATGAAGCAAAAGATCATGCGCGATC
GAGGAATAGGCCGATTCGATATCGCCAAATCTAACATTCGTGAGCGTCAA
GTTCTTGCCGTGTTTTTTTCGATCAAGTCTGCACTTTTCGGCACACAAGC
TGTTGTGCTTGCCAAATCACTTTCGATGCTGCTAATCCAAGCGCTTCACC
CAAATCCAGCTTATTCGAATCCTCTTCTATCTTATCAAACTTACTTCATA
CTCATGGGCTTCATCGCCGCGGCAACTTACTGGGTAACGAGATTAAACCA
CGGTCTCCGACTGTTTGAGGCCGTTTATCTCATCCCGATGATGCAAATAT
GTTGGATTCTCTTCAGCACCATCGCGGGGGGAATCTATTACGAAGAGTTT
ATCGGGTTTGGTAGGAAAGAATACGGCGCATATGCTGTCGGTTTCGTTTG
TGTACTTATTGGAGTGGCTATGCTGTGCCCACGAGATGATGCCAATGCCA
AGTCCCTCAATGCCGCCGATGTTATTTATGAAATTGTGTCCGAGGAAAAC
CCACTTGTGTCTCCTCAGCCGTCGAAATTCCAGCCGTTCAACGAGGAAGA
TGAAACTGAGGCTGGTGGTCGGCACTATCGAGGTCTTCGCACGGAAGAAT
CGGACGAGGATCACAAGCCATTTTCTTTAGAAGACGAACCGGCTGAAAAC
GAAGGACAAGGGTTGAGGCCTGAGGAAGCACCATTGAAGGCTGAAAAAAG
TCCTCTATGA
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