Gcaud2661.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2661.t1
Unique Name	Gcaud2661.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	342

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_558_length_22134_cov_4.093136	contig	NODE_558_length_22134_cov_4.093136:6846..7871 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	112098.XP_008617240.1
PFAMs	Pkinase_Tyr
Max annot lvl	2759\|Eukaryota
Evalue	1.81e-22
EggNOG OGs	COG0515@1\|root,KOG0192@2759\|Eukaryota
Description	protein kinase activity
COG category	KLT

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2661	Gcaud2661	Gracilaria caudata M_176_S67 male	gene	NODE_558_length_22134_cov_4.093136 6846..7871 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2661.t1.start1	Gcaud2661.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_558_length_22134_cov_4.093136 6846..6848 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2661.t1.CDS1	Gcaud2661.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_558_length_22134_cov_4.093136 6846..7871 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2661.t1.exon1	Gcaud2661.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_558_length_22134_cov_4.093136 6846..7871 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2661.t1.stop1	Gcaud2661.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_558_length_22134_cov_4.093136 7869..7871 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2661.t1	Gcaud2661.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_558_length_22134_cov_4.093136 6846..7871 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_558_length_22134_cov_4.093136:6846..7871+
coding sequence from alignment at NODE_558_length_22134_cov_4.093136:6846..7871+

mRNA sequence

>Gcaud2661.t1 ID=Gcaud2661.t1|Name=Gcaud2661.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=342bp
MRGGSLFHALGELRDEGVDAMALESLLRVARQAAHALSYLHSQNISYGDM
KSMNILLSEKVHIQDASFANGTQAKLCDFGLSINHNQPHEAHSSSDRRAP
QGTYAYLAPEAFSGLQTHDESAAKAADVYALGVVLWELATLQKPWAQKKP
LQLIHLVAKEGLRPSWPSALNVPCAYVKLVERCWQHDALRRPTMHEICDE
LDHMYARLSTDGMTGYSTDCAGCNLDDLADLEAIDVHDESDEEQSETDER
SDERVDWSSGLIKPVQSVRLSAEEVLHMCDSWSEVASEVTHASVARRQYD
VPMDALDEAAMERELRLLEERDSACGLEVLGIPLRRRGAFV*

spliced messenger RNA

>Gcaud2661.t1 ID=Gcaud2661.t1|Name=Gcaud2661.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at NODE_558_length_22134_cov_4.093136:6846..7871+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGGCGGCTCCCTCTTCCACGCATTGGGCGAGTTGCGAGACGAGGG
AGTCGACGCGATGGCGCTGGAATCGCTGCTTCGTGTAGCCAGACAAGCAG
CGCACGCGCTCTCATACTTGCACTCCCAAAACATTTCTTACGGAGATATG
AAGAGTATGAACATCTTGCTTTCCGAAAAGGTGCACATTCAAGATGCTTC
GTTCGCCAACGGCACGCAGGCCAAATTATGTGACTTCGGCCTTTCCATCA
ATCACAATCAGCCACACGAGGCGCACAGCAGTAGCGATCGACGCGCACCG
CAAGGAACGTATGCGTATCTCGCACCAGAGGCGTTCAGTGGGCTACAGAC
GCACGATGAGAGCGCTGCAAAAGCAGCCGATGTGTACGCATTAGGCGTAG
TTTTGTGGGAACTGGCCACGCTGCAAAAACCGTGGGCGCAAAAGAAGCCG
CTCCAATTGATCCATCTGGTGGCCAAAGAAGGCCTACGACCGAGTTGGCC
GTCTGCGCTGAATGTACCGTGCGCTTACGTCAAGTTAGTCGAGCGTTGCT
GGCAACATGACGCGCTGAGAAGACCTACGATGCATGAAATATGTGACGAA
CTGGACCACATGTATGCACGGCTCAGCACGGACGGCATGACTGGTTATTC
CACGGACTGTGCAGGATGTAACCTGGATGATTTGGCCGATTTGGAAGCCA
TCGACGTGCACGATGAGAGTGACGAGGAGCAATCGGAGACGGACGAGAGG
TCGGACGAGCGCGTGGATTGGTCGTCAGGCCTCATCAAGCCGGTGCAGTC
TGTTCGACTGTCGGCGGAGGAAGTGCTACACATGTGTGACAGCTGGAGCG
AAGTGGCGTCGGAGGTGACGCACGCGTCGGTGGCGCGACGACAGTACGAC
GTACCGATGGACGCGTTGGACGAGGCCGCGATGGAACGCGAGTTGCGGCT
GCTGGAGGAGAGGGACAGTGCCTGCGGCTTGGAGGTGCTGGGGATCCCAT
TGCGGCGCAGAGGAGCGTTTGTGTAA

protein sequence of Gcaud2661.t1

>Gcaud2661.t1 ID=Gcaud2661.t1|Name=Gcaud2661.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=342bp
MRGGSLFHALGELRDEGVDAMALESLLRVARQAAHALSYLHSQNISYGDM
KSMNILLSEKVHIQDASFANGTQAKLCDFGLSINHNQPHEAHSSSDRRAP
QGTYAYLAPEAFSGLQTHDESAAKAADVYALGVVLWELATLQKPWAQKKP
LQLIHLVAKEGLRPSWPSALNVPCAYVKLVERCWQHDALRRPTMHEICDE
LDHMYARLSTDGMTGYSTDCAGCNLDDLADLEAIDVHDESDEEQSETDER
SDERVDWSSGLIKPVQSVRLSAEEVLHMCDSWSEVASEVTHASVARRQYD
VPMDALDEAAMERELRLLEERDSACGLEVLGIPLRRRGAFV*

mRNA from alignment at NODE_558_length_22134_cov_4.093136:6846..7871+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2661.t1 ID=Gcaud2661.t1|Name=Gcaud2661.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at NODE_558_length_22134_cov_4.093136:6846..7871+ (Gracilaria caudata M_176_S67 male)
ATGAGGGGCGGCTCCCTCTTCCACGCATTGGGCGAGTTGCGAGACGAGGG
AGTCGACGCGATGGCGCTGGAATCGCTGCTTCGTGTAGCCAGACAAGCAG
CGCACGCGCTCTCATACTTGCACTCCCAAAACATTTCTTACGGAGATATG
AAGAGTATGAACATCTTGCTTTCCGAAAAGGTGCACATTCAAGATGCTTC
GTTCGCCAACGGCACGCAGGCCAAATTATGTGACTTCGGCCTTTCCATCA
ATCACAATCAGCCACACGAGGCGCACAGCAGTAGCGATCGACGCGCACCG
CAAGGAACGTATGCGTATCTCGCACCAGAGGCGTTCAGTGGGCTACAGAC
GCACGATGAGAGCGCTGCAAAAGCAGCCGATGTGTACGCATTAGGCGTAG
TTTTGTGGGAACTGGCCACGCTGCAAAAACCGTGGGCGCAAAAGAAGCCG
CTCCAATTGATCCATCTGGTGGCCAAAGAAGGCCTACGACCGAGTTGGCC
GTCTGCGCTGAATGTACCGTGCGCTTACGTCAAGTTAGTCGAGCGTTGCT
GGCAACATGACGCGCTGAGAAGACCTACGATGCATGAAATATGTGACGAA
CTGGACCACATGTATGCACGGCTCAGCACGGACGGCATGACTGGTTATTC
CACGGACTGTGCAGGATGTAACCTGGATGATTTGGCCGATTTGGAAGCCA
TCGACGTGCACGATGAGAGTGACGAGGAGCAATCGGAGACGGACGAGAGG
TCGGACGAGCGCGTGGATTGGTCGTCAGGCCTCATCAAGCCGGTGCAGTC
TGTTCGACTGTCGGCGGAGGAAGTGCTACACATGTGTGACAGCTGGAGCG
AAGTGGCGTCGGAGGTGACGCACGCGTCGGTGGCGCGACGACAGTACGAC
GTACCGATGGACGCGTTGGACGAGGCCGCGATGGAACGCGAGTTGCGGCT
GCTGGAGGAGAGGGACAGTGCCTGCGGCTTGGAGGTGCTGGGGATCCCAT
TGCGGCGCAGAGGAGCGTTTGTGTAA

Coding sequence (CDS) from alignment at NODE_558_length_22134_cov_4.093136:6846..7871+

>Gcaud2661.t1 ID=Gcaud2661.t1|Name=Gcaud2661.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1026bp|location=Sequence derived from alignment at NODE_558_length_22134_cov_4.093136:6846..7871+ (Gracilaria caudata M_176_S67 male)
ATGAGGGGCGGCTCCCTCTTCCACGCATTGGGCGAGTTGCGAGACGAGGG
AGTCGACGCGATGGCGCTGGAATCGCTGCTTCGTGTAGCCAGACAAGCAG
CGCACGCGCTCTCATACTTGCACTCCCAAAACATTTCTTACGGAGATATG
AAGAGTATGAACATCTTGCTTTCCGAAAAGGTGCACATTCAAGATGCTTC
GTTCGCCAACGGCACGCAGGCCAAATTATGTGACTTCGGCCTTTCCATCA
ATCACAATCAGCCACACGAGGCGCACAGCAGTAGCGATCGACGCGCACCG
CAAGGAACGTATGCGTATCTCGCACCAGAGGCGTTCAGTGGGCTACAGAC
GCACGATGAGAGCGCTGCAAAAGCAGCCGATGTGTACGCATTAGGCGTAG
TTTTGTGGGAACTGGCCACGCTGCAAAAACCGTGGGCGCAAAAGAAGCCG
CTCCAATTGATCCATCTGGTGGCCAAAGAAGGCCTACGACCGAGTTGGCC
GTCTGCGCTGAATGTACCGTGCGCTTACGTCAAGTTAGTCGAGCGTTGCT
GGCAACATGACGCGCTGAGAAGACCTACGATGCATGAAATATGTGACGAA
CTGGACCACATGTATGCACGGCTCAGCACGGACGGCATGACTGGTTATTC
CACGGACTGTGCAGGATGTAACCTGGATGATTTGGCCGATTTGGAAGCCA
TCGACGTGCACGATGAGAGTGACGAGGAGCAATCGGAGACGGACGAGAGG
TCGGACGAGCGCGTGGATTGGTCGTCAGGCCTCATCAAGCCGGTGCAGTC
TGTTCGACTGTCGGCGGAGGAAGTGCTACACATGTGTGACAGCTGGAGCG
AAGTGGCGTCGGAGGTGACGCACGCGTCGGTGGCGCGACGACAGTACGAC
GTACCGATGGACGCGTTGGACGAGGCCGCGATGGAACGCGAGTTGCGGCT
GCTGGAGGAGAGGGACAGTGCCTGCGGCTTGGAGGTGCTGGGGATCCCAT
TGCGGCGCAGAGGAGCGTTTGTGTAA