Gcaud252.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud252.t1
Unique Name	Gcaud252.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	389

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5578_length_1512_cov_10.010556	contig	NODE_5578_length_1512_cov_10.010556:2..1404 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7739.XP_002611032.1
Preferred name	TNPO1
PFAMs	HEAT,HEAT_EZ,IBN_N,Vac14_Fab1_bd
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K18727,ko:K18752
KEGG TC	1.I.1
GOs	GO:0000060,GO:0002164,GO:0002376,GO:0002520,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005829,GO:0005929,GO:0006606,GO:0006607,GO:0006610,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007275,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0009791,GO:0009894,GO:0009987,GO:0010468,GO:0010608,GO:0010970,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0017038,GO:0019219,GO:0019222,GO:0022607,GO:0030030,GO:0030031,GO:0030097,GO:0030705,GO:0031090,GO:0031323,GO:0031329,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032386,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0033036,GO:0033157,GO:0033218,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0035166,GO:0035167,GO:0035735,GO:0042073,GO:0042277,GO:0042306,GO:0042886,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043487,GO:0043488,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044782,GO:0045184,GO:0045595,GO:0045596,GO:0046822,GO:0046907,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048542,GO:0048569,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051049,GO:0051093,GO:0051147,GO:0051148,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051223,GO:0051234,GO:0051252,GO:0051641,GO:0051649,GO:0060255,GO:0060271,GO:0060341,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090087,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:1900180,GO:1903311,GO:1903827,GO:1904589
Evalue	7.49e-33
EggNOG OGs	KOG2023@1\|root,KOG2023@2759\|Eukaryota,38DR7@33154\|Opisthokonta,3BAW7@33208\|Metazoa,3CSYC@33213\|Bilateria,47ZTP@7711\|Chordata
Description	Transportin
COG category	UY
BRITE	ko00000,ko03009,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud252	Gcaud252	Gracilaria caudata M_176_S67 male	gene	NODE_5578_length_1512_cov_10.010556 2..1404 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud252.t1	Gcaud252.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_5578_length_1512_cov_10.010556 2..1404 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud252.t1.CDS1	Gcaud252.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_5578_length_1512_cov_10.010556 2..377 -
Gcaud252.t1.CDS2	Gcaud252.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_5578_length_1512_cov_10.010556 479..694 -
Gcaud252.t1.CDS3	Gcaud252.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_5578_length_1512_cov_10.010556 832..1404 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud252.t1.exon1	Gcaud252.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_5578_length_1512_cov_10.010556 2..377 -
Gcaud252.t1.exon2	Gcaud252.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_5578_length_1512_cov_10.010556 479..694 -
Gcaud252.t1.exon3	Gcaud252.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_5578_length_1512_cov_10.010556 832..1404 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud252.t1.intron1	Gcaud252.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_5578_length_1512_cov_10.010556 378..478 -
Gcaud252.t1.intron2	Gcaud252.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_5578_length_1512_cov_10.010556 695..831 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud252.t1.start1	Gcaud252.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_5578_length_1512_cov_10.010556 1402..1404 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_5578_length_1512_cov_10.010556:2..1404-
coding sequence from alignment at NODE_5578_length_1512_cov_10.010556:2..1404-

mRNA sequence

>Gcaud252.t1 ID=Gcaud252.t1|Name=Gcaud252.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=389bp
MILGTLARAFSQYQKNNLIVLYDVVCTMADAEGNELAVQEHMNVLMPLLT
AQWNATSDNDSKMLSLLECLSHVFRALGMSSQQYAGNIFSRCTSIMDSIY
TQEGRGEKEDAHVDFLTCCLDLMCALAEALGPNVDPFVGSNGNGGEPVLP
LLFAGMKDGLQEVRQSALALLGELARARTPSLIPALTESKDLLGVVDTTC
KDSFTLYYSLYKYNPNARQEFDNLEAALKDIRKMLDLAEGTPVVTYKTGR
QRDTVHEWRSEKWEVRASAYETTIDVSEVAWAWSSEFHKLRNAMYTRGED
VANLVSAAAGEESELYDPHASAVLLQWGGAGENVVIKGSFDNWSAEWLLS
KDVGEGGVFGLRLLLRPGEYTIFKLYGGTGRLKRNFSVX

spliced messenger RNA

>Gcaud252.t1 ID=Gcaud252.t1|Name=Gcaud252.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1165bp|location=Sequence derived from alignment at NODE_5578_length_1512_cov_10.010556:2..1404- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATACTCGGTACACTAGCTCGTGCGTTCTCTCAGTATCAGAAGAATAA
TCTCATTGTCCTATACGACGTGGTGTGTACAATGGCGGATGCCGAAGGGA
ATGAACTTGCAGTGCAGGAGCACATGAACGTGCTTATGCCCTTGCTCACG
GCTCAATGGAACGCCACATCCGATAATGACAGCAAAATGTTGTCATTACT
AGAATGCTTGTCACATGTATTCCGTGCCCTTGGAATGAGCTCTCAGCAGT
ACGCAGGAAACATATTTTCACGCTGTACAAGTATTATGGACTCAATTTAC
ACACAAGAAGGAAGAGGTGAAAAGGAAGACGCTCACGTTGACTTCCTCAC
ATGTTGTCTCGATCTTATGTGTGCATTGGCTGAAGCACTTGGGCCAAATG
TTGACCCGTTTGTGGGTAGCAATGGAAACGGAGGAGAACCTGTTTTGCCG
TTGCTCTTTGCAGGGATGAAGGACGGTCTGCAAGAGGTGAGACAGAGCGC
ACTCGCCCTTCTCGGTGAGCTCGCTCGCGCTCGCACGCCGTCATTAATAC
CTGCACTAACGGAATCGAAGGATCTGCTTGGTGTGGTGGACACCACCTGC
AAGGATAGCTTTACCTTGTACTATAGCCTGTACAAGTACAACCCCAACGC
CAGACAGGAGTTTGATAACTTGGAAGCGGCTCTCAAGGACATCAGGAAGA
TGCTTGACCTGGCTGAGGGAACGCCAGTAGTCACGTACAAAACTGGTAGG
CAACGGGACACGGTGCACGAGTGGAGAAGTGAGAAATGGGAAGTTCGGGC
ATCTGCTTATGAGACCACTATCGACGTATCAGAGGTTGCTTGGGCGTGGT
CGAGCGAGTTCCACAAGCTGAGGAACGCGATGTACACTCGTGGAGAAGAC
GTAGCGAATTTGGTTTCTGCCGCAGCTGGCGAAGAATCCGAATTGTATGA
TCCTCACGCATCAGCTGTATTGCTGCAATGGGGTGGAGCAGGTGAAAACG
TGGTGATCAAGGGATCGTTCGACAACTGGTCGGCAGAATGGCTACTGAGC
AAAGATGTCGGTGAGGGTGGTGTGTTTGGCTTGAGATTGCTGCTTCGTCC
CGGGGAGTACACAATCTTCAAACTTTACGGAGGCACTGGGCGCCTGAAAC
GAAACTTCTCAGTGA

protein sequence of Gcaud252.t1

>Gcaud252.t1 ID=Gcaud252.t1|Name=Gcaud252.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=389bp
MILGTLARAFSQYQKNNLIVLYDVVCTMADAEGNELAVQEHMNVLMPLLT
AQWNATSDNDSKMLSLLECLSHVFRALGMSSQQYAGNIFSRCTSIMDSIY
TQEGRGEKEDAHVDFLTCCLDLMCALAEALGPNVDPFVGSNGNGGEPVLP
LLFAGMKDGLQEVRQSALALLGELARARTPSLIPALTESKDLLGVVDTTC
KDSFTLYYSLYKYNPNARQEFDNLEAALKDIRKMLDLAEGTPVVTYKTGR
QRDTVHEWRSEKWEVRASAYETTIDVSEVAWAWSSEFHKLRNAMYTRGED
VANLVSAAAGEESELYDPHASAVLLQWGGAGENVVIKGSFDNWSAEWLLS
KDVGEGGVFGLRLLLRPGEYTIFKLYGGTGRLKRNFSVX

mRNA from alignment at NODE_5578_length_1512_cov_10.010556:2..1404-

Legend: polypeptideCDSexonstart_codonintron

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud252.t1 ID=Gcaud252.t1|Name=Gcaud252.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1403bp|location=Sequence derived from alignment at NODE_5578_length_1512_cov_10.010556:2..1404- (Gracilaria caudata M_176_S67 male)
ATGATACTCGGTACACTAGCTCGTGCGTTCTCTCAGTATCAGAAGAATAA
TCTCATTGTCCTATACGACGTGGTGTGTACAATGGCGGATGCCGAAGGGA
ATGAACTTGCAGTGCAGGAGCACATGAACGTGCTTATGCCCTTGCTCACG
GCTCAATGGAACGCCACATCCGATAATGACAGCAAAATGTTGTCATTACT
AGAATGCTTGTCACATGTATTCCGTGCCCTTGGAATGAGCTCTCAGCAGT
ACGCAGGAAACATATTTTCACGCTGTACAAGTATTATGGACTCAATTTAC
ACACAAGAAGGAAGAGGTGAAAAGGAAGACGCTCACGTTGACTTCCTCAC
ATGTTGTCTCGATCTTATGTGTGCATTGGCTGAAGCACTTGGGCCAAATG
TTGACCCGTTTGTGGGTAGCAATGGAAACGGAGGAGAACCTGTTTTGCCG
TTGCTCTTTGCAGGGATGAAGGACGGTCTGCAAGAGGTGAGACAGAGCGC
ACTCGCCCTTCTCGGTGAGCTCGCTCGCGCTCGCACGCCGTCATTAATAC
CTGCACTAACGGAATCGAAGGATGTATCATGGTTACGATGGACTGTGCCA
CACATGACAAACACGCAGCGTCAACACAATTCATCACACATACAACAGGC
CGCATGCTTGCACAACTGCATGTTGAGTCCACTCCGATCAATACAAAGGG
TTACGAATAGCTGCTTGGTGTGGTGGACACCACCTGCAAGGATAGCTTTA
CCTTGTACTATAGCCTGTACAAGTACAACCCCAACGCCAGACAGGAGTTT
GATAACTTGGAAGCGGCTCTCAAGGACATCAGGAAGATGCTTGACCTGGC
TGAGGGAACGCCAGTAGTCACGTACAAAACTGGTAGGCAACGGGACACGG
TGCACGAGTGGAGAAGTGAGAAATGGGTGAAGGCAATGGATTCACATTTG
AGGATTACTCACACGGCGACTCTGTTTGGGCTGTGAAGCGAGCGCTTCGC
GTGTTTTCGCAACCTCATGAATACGAGGAAGTTCGGGCATCTGCTTATGA
GACCACTATCGACGTATCAGAGGTTGCTTGGGCGTGGTCGAGCGAGTTCC
ACAAGCTGAGGAACGCGATGTACACTCGTGGAGAAGACGTAGCGAATTTG
GTTTCTGCCGCAGCTGGCGAAGAATCCGAATTGTATGATCCTCACGCATC
AGCTGTATTGCTGCAATGGGGTGGAGCAGGTGAAAACGTGGTGATCAAGG
GATCGTTCGACAACTGGTCGGCAGAATGGCTACTGAGCAAAGATGTCGGT
GAGGGTGGTGTGTTTGGCTTGAGATTGCTGCTTCGTCCCGGGGAGTACAC
AATCTTCAAACTTTACGGAGGCACTGGGCGCCTGAAACGAAACTTCTCAG
TGA

Coding sequence (CDS) from alignment at NODE_5578_length_1512_cov_10.010556:2..1404-

>Gcaud252.t1 ID=Gcaud252.t1|Name=Gcaud252.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1165bp|location=Sequence derived from alignment at NODE_5578_length_1512_cov_10.010556:2..1404- (Gracilaria caudata M_176_S67 male)
ATGATACTCGGTACACTAGCTCGTGCGTTCTCTCAGTATCAGAAGAATAA
TCTCATTGTCCTATACGACGTGGTGTGTACAATGGCGGATGCCGAAGGGA
ATGAACTTGCAGTGCAGGAGCACATGAACGTGCTTATGCCCTTGCTCACG
GCTCAATGGAACGCCACATCCGATAATGACAGCAAAATGTTGTCATTACT
AGAATGCTTGTCACATGTATTCCGTGCCCTTGGAATGAGCTCTCAGCAGT
ACGCAGGAAACATATTTTCACGCTGTACAAGTATTATGGACTCAATTTAC
ACACAAGAAGGAAGAGGTGAAAAGGAAGACGCTCACGTTGACTTCCTCAC
ATGTTGTCTCGATCTTATGTGTGCATTGGCTGAAGCACTTGGGCCAAATG
TTGACCCGTTTGTGGGTAGCAATGGAAACGGAGGAGAACCTGTTTTGCCG
TTGCTCTTTGCAGGGATGAAGGACGGTCTGCAAGAGGTGAGACAGAGCGC
ACTCGCCCTTCTCGGTGAGCTCGCTCGCGCTCGCACGCCGTCATTAATAC
CTGCACTAACGGAATCGAAGGATCTGCTTGGTGTGGTGGACACCACCTGC
AAGGATAGCTTTACCTTGTACTATAGCCTGTACAAGTACAACCCCAACGC
CAGACAGGAGTTTGATAACTTGGAAGCGGCTCTCAAGGACATCAGGAAGA
TGCTTGACCTGGCTGAGGGAACGCCAGTAGTCACGTACAAAACTGGTAGG
CAACGGGACACGGTGCACGAGTGGAGAAGTGAGAAATGGGAAGTTCGGGC
ATCTGCTTATGAGACCACTATCGACGTATCAGAGGTTGCTTGGGCGTGGT
CGAGCGAGTTCCACAAGCTGAGGAACGCGATGTACACTCGTGGAGAAGAC
GTAGCGAATTTGGTTTCTGCCGCAGCTGGCGAAGAATCCGAATTGTATGA
TCCTCACGCATCAGCTGTATTGCTGCAATGGGGTGGAGCAGGTGAAAACG
TGGTGATCAAGGGATCGTTCGACAACTGGTCGGCAGAATGGCTACTGAGC
AAAGATGTCGGTGAGGGTGGTGTGTTTGGCTTGAGATTGCTGCTTCGTCC
CGGGGAGTACACAATCTTCAAACTTTACGGAGGCACTGGGCGCCTGAAAC
GAAACTTCTCAGTGA