Gcaud9960.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9960.t1
Unique NameGcaud9960.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length225
Homology
BLAST of Gcaud9960.t1 vs. uniprot
Match: A0A2V3IQP8_9FLOR (Signal peptidase complex subunit 2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQP8_9FLOR)

HSP 1 Score: 280 bits (717), Expect = 5.130e-93
Identity = 148/224 (66.07%), Postives = 183/224 (81.70%), Query Frame = 0
Query:    1 MSKRTRKSAQAESISTDVTDANDLRPSTPSASTSQSDSKPKLDKSGLYDLQQVKRLLDDEIMAFMEDQGYIESIAASIIKIVAGTVAVVAALYSHFGPGEFPANKLVVCACVATYVVCVALINGSSFFLEASAIYVGTISKRVKQTSKRSLCEKVWVHTTIGGKGSSAYKVEIRQAPRSKLGSVSKSTPYEKYITEEGRFLSAQFRADMLTLLSQLSPGSKKTN 224
            M++R R+S++  S++T    A D   ++ +  T++S  K KLDKSGLYD+QQVKRLLDDE+MAFM+DQGY+ES   S +KIVAGT+AV AALYSHFGPGEFPANK VV ACVA Y+ CV+LIN +SF LEASAIYVGT++ R+ Q S+ SL +K+WVHTTIGGKGSS YKVE+R A RSK GSV+KSTPYEK+ITE+GRFLS  FRA+M ++LS+LSPG KKTN
Sbjct:    1 MNRRGRRSSEDSSVTT----ATDTASTSRTVETNESKPKAKLDKSGLYDMQQVKRLLDDEVMAFMDDQGYVESTFVSNVKIVAGTIAVAAALYSHFGPGEFPANKPVVFACVAIYIFCVSLINLTSFVLEASAIYVGTLTSRMIQVSQGSLAKKIWVHTTIGGKGSSDYKVELRLASRSKKGSVAKSTPYEKFITEDGRFLSDVFRAEMRSILSELSPGVKKTN 220          
BLAST of Gcaud9960.t1 vs. uniprot
Match: R7Q936_CHOCR (Signal peptidase complex subunit 2 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q936_CHOCR)

HSP 1 Score: 192 bits (488), Expect = 2.850e-58
Identity = 103/221 (46.61%), Postives = 148/221 (66.97%), Query Frame = 0
Query:    4 RTRKSAQAESISTDVTDANDLRPSTPSASTSQSDSKPKLDKSGLYDLQQVKRLLDDEIMAFMEDQGYIESIAASIIKIVAGTVAVVAALYSHFGPGEFPANKLVVCACVATYVVCVALINGSSFFLEASAIYVGTISKRVKQTSKRSLCEKVWVHTTIGGKGSSAYKVEIRQAPRSKLGSVSKSTPYEKYITEEGRFLSAQFRADMLTLLSQLSPGSKKTN 224
            R R + + ES S + + A      T S++ + ++ + K+DKSGLYDL QVKRLLDDE++  ME +GY E++  S IKI+AGT+AV AA++SHF P EFP N+ +V  CV  Y  C+  IN S++  +A+A+YVG ++ + K+ +K  L EKVWV T +G KGSS Y++ IR +P+   G V  +  YEKY TEEGRFL+  F+ D+   +SQ+  GSKK+N
Sbjct:    5 RRRAAPKGESASEETSGAE-----TGSSTPAVTNPRAKIDKSGLYDLAQVKRLLDDEMIECMEAKGYDEAVLVSNIKILAGTIAVAAAMFSHFNPWEFPGNRNIVLGCVLLYGACIGSINLSAYIWDANAMYVGRLAAKAKRIAKSKLPEKVWVSTRLGEKGSSIYRLTIRTSPQQSEGKVEITNGYEKYFTEEGRFLATSFQTDLSDAVSQVGSGSKKSN 220          
BLAST of Gcaud9960.t1 vs. uniprot
Match: A0A835YAC2_9CHLO (Signal peptidase complex subunit 2 n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835YAC2_9CHLO)

HSP 1 Score: 70.9 bits (172), Expect = 1.920e-11
Identity = 46/100 (46.00%), Postives = 57/100 (57.00%), Query Frame = 0
Query:   37 DSKPKLDKSGLYDLQQVKRLLDDEIMAFMEDQGYIESIAASIIKIVAGTVAVVAALYSHFGPGEFPANKLVVCACVATYVVCVALINGSSFFLEASAIYV 136
            D KP L  S LY+   +K  LDD     + DQGY E +    IKI  G +A+ AA++SHFGPG+FPAN   V ACV TYVV    +N  S  +E  A  V
Sbjct:   26 DHKP-LKLSNLYEGGALKAALDDVAREAVLDQGYQEDVMIQNIKIGLGLLAIGAAVFSHFGPGKFPANWWQVFACVVTYVVLTIAMNVYSMRVEGDAFLV 124          
BLAST of Gcaud9960.t1 vs. uniprot
Match: A0A383W038_TETOB (Signal peptidase complex subunit 2 n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W038_TETOB)

HSP 1 Score: 65.5 bits (158), Expect = 1.740e-9
Identity = 53/197 (26.90%), Postives = 86/197 (43.65%), Query Frame = 0
Query:   29 PSASTSQSDSKPKLDKSGLYDLQQVKRLLDDEIMAFMEDQGYIESIAASIIKIVAGTVAVVAALYSHFGPGEFPANKLVVCACVATYVVCVALI-------NGSSFFL---EASAIYVGTISKRVKQTSKRSLCEKVWVHTTIGGKGSSAYKVEIRQAPRSKLGSVSKSTPYEKYITEEGRFLSAQFRADMLTLLSQ 215
            P  +T+ ++ +P+ +K  L D   +K  LD      +   GY+E    S +KI  G +A+  A+YSHFGPG+FPAN   V  CVA Y V   ++        G SF +   +  + Y   ++ R+++ S +                   Y + I  A +     V   T    Y   +G    A+++  +  LLSQ
Sbjct:    5 PVVATAPAEQQPEPEKINLDDGHAIKHKLDSTASEVILQSGYVEDHLISNVKITLGLIAIAVAIYSHFGPGKFPANWSAVVYCVAAYCVLNLVLIIFCNIKEGDSFLITHPKPGSEYGLRVASRMERYSDQ-------------------YTLIISSANKWLDREVKMETSVTDYFHSDGYLAEAKYKHHVAKLLSQ 182          
BLAST of Gcaud9960.t1 vs. uniprot
Match: A0A7S0BDC9_9RHOD (Signal peptidase complex subunit 2 n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BDC9_9RHOD)

HSP 1 Score: 62.4 bits (150), Expect = 2.360e-8
Identity = 51/189 (26.98%), Postives = 93/189 (49.21%), Query Frame = 0
Query:   42 LDKSGLYDLQQVKRLLDDEIMAFMEDQGYIESIAASIIKIVAGTVAVVAALYSHFGPGEFPANKLVVCACVATYVVCVALIN------GSSFFLEASAIYVGTISKRVKQTSK--RSLCEKVWVHTTIGGKGSSAYKVEIRQAPRSKLGSVSKSTPYEKYITEEGRFLSAQFRADMLTLLSQLSPGSKK 222
            +DK  L+D Q VK+ LDD +M  ++ +GY ES    +   +  ++AV AA+ SHF   +F   + ++  C+A ++VC  ++       G+SF   + A Y+G    +   T+   + +C      T+   K S  Y +++  + RS+   V ++  Y  Y T  G+FL  +F + +   + +L     K
Sbjct:   26 VDKLVLHDTQFVKKHLDDFMMKVLKSEGYEESNLLVVTNFMVTSIAVAAAVCSHFVLKDFKTQQHLMILCIAIWMVCSLILGITERMYGASF---SGASYIGFSDPKRMGTAPPFKFICA-----TSTLPKYSQEYMLKMTPS-RSRKPLVERNLRYNDYYTSNGQFLKEKFESQVKKAIQELISAKTK 205          
The following BLAST results are available for this feature:
BLAST of Gcaud9960.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IQP8_9FLOR5.130e-9366.07Signal peptidase complex subunit 2 n=1 Tax=Gracila... [more]
R7Q936_CHOCR2.850e-5846.61Signal peptidase complex subunit 2 n=1 Tax=Chondru... [more]
A0A835YAC2_9CHLO1.920e-1146.00Signal peptidase complex subunit 2 n=1 Tax=Edaphoc... [more]
A0A383W038_TETOB1.740e-926.90Signal peptidase complex subunit 2 n=1 Tax=Tetrade... [more]
A0A7S0BDC9_9RHOD2.360e-826.98Signal peptidase complex subunit 2 n=1 Tax=Rhodoso... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009582Signal peptidase complex subunit Spc2/SPCS2PFAMPF06703SPC25coord: 53..213
e-value: 9.4E-22
score: 77.5
IPR009582Signal peptidase complex subunit Spc2/SPCS2PANTHERPTHR13085MICROSOMAL SIGNAL PEPTIDASE 25 KDA SUBUNITcoord: 33..217
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..38
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..38
NoneNo IPR availablePANTHERPTHR13085:SF0SIGNAL PEPTIDASE COMPLEX SUBUNIT 2coord: 33..217
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 70..93
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..69
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 140..224
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 113..139
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 94..112
NoneNo IPR availableTMHMMTMhelixcoord: 74..96
NoneNo IPR availableTMHMMTMhelixcoord: 106..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_556_length_22202_cov_4.379087contigNODE_556_length_22202_cov_4.379087:20195..21021 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9960.t1Gcaud9960.t1Gracilaria caudata M_176_S67 malemRNANODE_556_length_22202_cov_4.379087 20195..21021 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9960.t1 ID=Gcaud9960.t1|Name=Gcaud9960.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=225bp
MSKRTRKSAQAESISTDVTDANDLRPSTPSASTSQSDSKPKLDKSGLYDL
QQVKRLLDDEIMAFMEDQGYIESIAASIIKIVAGTVAVVAALYSHFGPGE
FPANKLVVCACVATYVVCVALINGSSFFLEASAIYVGTISKRVKQTSKRS
LCEKVWVHTTIGGKGSSAYKVEIRQAPRSKLGSVSKSTPYEKYITEEGRF
LSAQFRADMLTLLSQLSPGSKKTN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009582Spc2/SPCS2