Gcaud9960.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9960.t1
Unique NameGcaud9960.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length225
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_556_length_22202_cov_4.379087contigNODE_556_length_22202_cov_4.379087:20195..21021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog57918.XP_004307615.1
PFAMsSPC25
Max annot lvl35493|Streptophyta
KEGG koko:K12947
KEGG Pathwayko03060,map03060
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005787,GO:0005789,GO:0006465,GO:0006508,GO:0006518,GO:0006605,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016485,GO:0019538,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0042175,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0098796,GO:0098827,GO:1901564,GO:1902494,GO:1905368
Evalue1.49e-08
EggNOG OGs2CND4@1|root,2QVCN@2759|Eukaryota,37T0Y@33090|Viridiplantae,3GCVR@35493|Streptophyta,4JJR3@91835|fabids
Descriptionsignal peptidase complex subunit
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9960Gcaud9960Gracilaria caudata M_176_S67 malegeneNODE_556_length_22202_cov_4.379087 20195..21021 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9960.t1Gcaud9960.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_556_length_22202_cov_4.379087 20195..21021 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9960.t1.stop1Gcaud9960.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_556_length_22202_cov_4.379087 20195..20197 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9960.t1.CDS1Gcaud9960.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_556_length_22202_cov_4.379087 20195..20680 -
Gcaud9960.t1.CDS2Gcaud9960.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_556_length_22202_cov_4.379087 20833..21021 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9960.t1.exon1Gcaud9960.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_556_length_22202_cov_4.379087 20195..20680 -
Gcaud9960.t1.exon2Gcaud9960.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_556_length_22202_cov_4.379087 20833..21021 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9960.t1.intron1Gcaud9960.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_556_length_22202_cov_4.379087 20681..20832 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9960.t1.start1Gcaud9960.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_556_length_22202_cov_4.379087 21019..21021 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9960.t1 ID=Gcaud9960.t1|Name=Gcaud9960.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=225bp
MSKRTRKSAQAESISTDVTDANDLRPSTPSASTSQSDSKPKLDKSGLYDL
QQVKRLLDDEIMAFMEDQGYIESIAASIIKIVAGTVAVVAALYSHFGPGE
FPANKLVVCACVATYVVCVALINGSSFFLEASAIYVGTISKRVKQTSKRS
LCEKVWVHTTIGGKGSSAYKVEIRQAPRSKLGSVSKSTPYEKYITEEGRF
LSAQFRADMLTLLSQLSPGSKKTN*
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spliced messenger RNA

>Gcaud9960.t1 ID=Gcaud9960.t1|Name=Gcaud9960.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=675bp|location=Sequence derived from alignment at NODE_556_length_22202_cov_4.379087:20195..21021- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAAAAGAACCAGAAAATCGGCCCAGGCAGAGTCAATTTCTACAGA
TGTCACGGACGCAAATGATCTTCGGCCATCGACCCCTTCAGCTTCAACCT
CGCAATCGGATTCAAAGCCGAAGTTAGACAAGTCAGGCCTATACGATTTG
CAACAAGTGAAGCGCTTACTTGATGATGAGATTATGGCGTTTATGGAGGA
TCAAGGCTACATCGAATCAATCGCTGCAAGCATTATAAAAATTGTTGCTG
GTACAGTTGCAGTCGTTGCTGCTCTGTACTCTCATTTTGGACCCGGTGAA
TTCCCCGCCAACAAACTTGTAGTTTGCGCTTGCGTTGCTACCTACGTAGT
ATGTGTCGCACTCATCAATGGGTCGTCTTTCTTCTTGGAAGCTTCCGCAA
TATATGTTGGAACTATTTCAAAACGTGTGAAACAAACTTCCAAACGCTCA
TTGTGCGAGAAAGTCTGGGTGCATACAACTATCGGTGGAAAGGGATCCAG
CGCATACAAAGTGGAAATACGGCAGGCTCCTCGATCAAAGCTTGGATCCG
TTTCGAAATCAACACCTTATGAAAAGTATATCACAGAAGAAGGAAGATTT
CTTTCTGCTCAATTCCGCGCTGACATGCTAACCCTATTATCCCAGCTTAG
CCCAGGATCGAAGAAAACCAATTGA
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protein sequence of Gcaud9960.t1

>Gcaud9960.t1 ID=Gcaud9960.t1|Name=Gcaud9960.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=225bp
MSKRTRKSAQAESISTDVTDANDLRPSTPSASTSQSDSKPKLDKSGLYDL
QQVKRLLDDEIMAFMEDQGYIESIAASIIKIVAGTVAVVAALYSHFGPGE
FPANKLVVCACVATYVVCVALINGSSFFLEASAIYVGTISKRVKQTSKRS
LCEKVWVHTTIGGKGSSAYKVEIRQAPRSKLGSVSKSTPYEKYITEEGRF
LSAQFRADMLTLLSQLSPGSKKTN*
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mRNA from alignment at NODE_556_length_22202_cov_4.379087:20195..21021-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9960.t1 ID=Gcaud9960.t1|Name=Gcaud9960.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=827bp|location=Sequence derived from alignment at NODE_556_length_22202_cov_4.379087:20195..21021- (Gracilaria caudata M_176_S67 male)
ATGAGCAAAAGAACCAGAAAATCGGCCCAGGCAGAGTCAATTTCTACAGA
TGTCACGGACGCAAATGATCTTCGGCCATCGACCCCTTCAGCTTCAACCT
CGCAATCGGATTCAAAGCCGAAGTTAGACAAGTCAGGCCTATACGATTTG
CAACAAGTGAAGCGCTTACTTGATGATGAGATTATGGCGGTATGTTTCTC
ACCTCGGTTGCATCCGTTACGTGCGCGTTCAATTCATGCCTCGGCTTCCG
ACATGCTTTCTTTGAGGACTAACATGTCGCTTCTTTGTTCATATCAACAA
CGGTTTTCAAACTCGTTTTGTTTTCTGCGGTATTTGTTCAGTTTATGGAG
GATCAAGGCTACATCGAATCAATCGCTGCAAGCATTATAAAAATTGTTGC
TGGTACAGTTGCAGTCGTTGCTGCTCTGTACTCTCATTTTGGACCCGGTG
AATTCCCCGCCAACAAACTTGTAGTTTGCGCTTGCGTTGCTACCTACGTA
GTATGTGTCGCACTCATCAATGGGTCGTCTTTCTTCTTGGAAGCTTCCGC
AATATATGTTGGAACTATTTCAAAACGTGTGAAACAAACTTCCAAACGCT
CATTGTGCGAGAAAGTCTGGGTGCATACAACTATCGGTGGAAAGGGATCC
AGCGCATACAAAGTGGAAATACGGCAGGCTCCTCGATCAAAGCTTGGATC
CGTTTCGAAATCAACACCTTATGAAAAGTATATCACAGAAGAAGGAAGAT
TTCTTTCTGCTCAATTCCGCGCTGACATGCTAACCCTATTATCCCAGCTT
AGCCCAGGATCGAAGAAAACCAATTGA
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Coding sequence (CDS) from alignment at NODE_556_length_22202_cov_4.379087:20195..21021-

>Gcaud9960.t1 ID=Gcaud9960.t1|Name=Gcaud9960.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=675bp|location=Sequence derived from alignment at NODE_556_length_22202_cov_4.379087:20195..21021- (Gracilaria caudata M_176_S67 male)
ATGAGCAAAAGAACCAGAAAATCGGCCCAGGCAGAGTCAATTTCTACAGA
TGTCACGGACGCAAATGATCTTCGGCCATCGACCCCTTCAGCTTCAACCT
CGCAATCGGATTCAAAGCCGAAGTTAGACAAGTCAGGCCTATACGATTTG
CAACAAGTGAAGCGCTTACTTGATGATGAGATTATGGCGTTTATGGAGGA
TCAAGGCTACATCGAATCAATCGCTGCAAGCATTATAAAAATTGTTGCTG
GTACAGTTGCAGTCGTTGCTGCTCTGTACTCTCATTTTGGACCCGGTGAA
TTCCCCGCCAACAAACTTGTAGTTTGCGCTTGCGTTGCTACCTACGTAGT
ATGTGTCGCACTCATCAATGGGTCGTCTTTCTTCTTGGAAGCTTCCGCAA
TATATGTTGGAACTATTTCAAAACGTGTGAAACAAACTTCCAAACGCTCA
TTGTGCGAGAAAGTCTGGGTGCATACAACTATCGGTGGAAAGGGATCCAG
CGCATACAAAGTGGAAATACGGCAGGCTCCTCGATCAAAGCTTGGATCCG
TTTCGAAATCAACACCTTATGAAAAGTATATCACAGAAGAAGGAAGATTT
CTTTCTGCTCAATTCCGCGCTGACATGCTAACCCTATTATCCCAGCTTAG
CCCAGGATCGAAGAAAACCAATTGA
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