Gcaud3875.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3875.t1
Unique Name	Gcaud3875.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	627

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_54_length_62775_cov_4.630257	contig	NODE_54_length_62775_cov_4.630257:15275..17155 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	391596.PBAL39_20510
Max annot lvl	976\|Bacteroidetes
Evalue	4.38e-69
EggNOG OGs	COG3408@1\|root,COG3408@2\|Bacteria,4NFMY@976\|Bacteroidetes
Description	Glycogen debranching enzyme
COG category	G

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3875	Gcaud3875	Gracilaria caudata M_176_S67 male	gene	NODE_54_length_62775_cov_4.630257 15275..17155 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3875.t1.stop1	Gcaud3875.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_54_length_62775_cov_4.630257 15275..15277 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3875.t1.CDS1	Gcaud3875.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_54_length_62775_cov_4.630257 15275..17155 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3875.t1.exon1	Gcaud3875.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_54_length_62775_cov_4.630257 15275..17155 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3875.t1.start1	Gcaud3875.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_54_length_62775_cov_4.630257 17153..17155 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3875.t1	Gcaud3875.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_54_length_62775_cov_4.630257 15275..17155 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_54_length_62775_cov_4.630257:15275..17155-
coding sequence from alignment at NODE_54_length_62775_cov_4.630257:15275..17155-

mRNA sequence

>Gcaud3875.t1 ID=Gcaud3875.t1|Name=Gcaud3875.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=627bp
MAEWTPDVTSRPLSLSLSAVPGLQAPRSSIELCGLRASAIVTFSARALHS
VLAIFPTRFVNPAHPRGYLRTELQFDTQLSPTRIRYDGVCVSLVDAHNVT
QSFFVSPSQPAVYCTFTFSAAQVEQEQLRKPTVTTVLQHATHHVFKQHVW
VSHSRLLIKYSCLQTQSLSVPFADLLLRTNLVYEWTSPVSLQCPDSNISL
LNHFSKIRTQECVFNASKLGLVHSPTGGMFYCGVWCNDQAEYAAPALAYL
GGPHSRARQCALSSLRVLANYFEFEPPSIPYSVEIDGGYIGRLDRGDAAM
FAWGASLFALTLADQSITDELFPNISFACGMLYHKLITSSNGVIASQSDE
LEGRFPSGTHNLSTNCIAIMAFEAAAQVAILAKDASLRDQYRSAARTLRI
STHQYFRCDDERTYSYYKHCQDARGWTCLTALAELAQGERALEYCLNQLW
VDDGVLTSNAHSVVWDRTTLYAIRAAFRVGLVDVATKRLQQYAKRRLRST
PSAPFPVENNESWAQLSAESALFVRVIVEGLLGIDVLSERRLLFRPRCPH
AWPGYTLENVYFADVCVTFRVQVVDGQMSVQVESTDGGCQTHVDNGHLLL
RLPPPPSSPEFTHLTNQQYTTIRSSS*

spliced messenger RNA

>Gcaud3875.t1 ID=Gcaud3875.t1|Name=Gcaud3875.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1881bp|location=Sequence derived from alignment at NODE_54_length_62775_cov_4.630257:15275..17155- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAGTGGACGCCCGACGTCACCTCCCGACCGCTCTCGCTCTCGCT
TTCCGCAGTGCCCGGCTTGCAGGCGCCGCGCTCCTCCATCGAACTTTGCG
GACTTCGCGCTTCCGCCATCGTCACGTTTTCTGCGCGTGCGCTGCACTCC
GTGTTGGCCATCTTTCCTACCCGATTTGTAAACCCCGCGCATCCTAGGGG
CTATCTACGCACCGAGCTTCAGTTCGATACGCAGTTGTCACCAACCCGAA
TCCGCTATGACGGCGTGTGTGTGTCGCTCGTGGATGCTCACAATGTCACC
CAGTCGTTCTTCGTATCGCCCTCACAACCGGCCGTATACTGTACCTTCAC
GTTTTCCGCTGCGCAGGTTGAGCAGGAGCAGCTCAGGAAACCGACTGTTA
CCACCGTGCTTCAACACGCTACGCACCACGTTTTCAAGCAGCATGTGTGG
GTGTCGCACTCGCGTCTCTTGATTAAGTACAGCTGCTTGCAGACTCAGTC
TCTTTCTGTCCCGTTTGCGGACCTGCTTCTTCGAACAAATCTTGTTTACG
AATGGACCTCTCCGGTTTCTCTCCAATGCCCTGACAGTAACATCAGTCTG
CTCAACCACTTCTCGAAGATTAGAACGCAGGAATGTGTGTTCAATGCCTC
CAAATTGGGACTCGTTCACTCGCCCACTGGTGGTATGTTCTATTGTGGCG
TTTGGTGCAACGATCAGGCTGAATACGCTGCGCCGGCTCTGGCCTATTTG
GGCGGCCCCCACTCCAGAGCTAGACAGTGTGCTCTCAGTTCTCTGCGCGT
TCTGGCAAACTATTTTGAGTTTGAGCCCCCGAGCATTCCGTATAGCGTCG
AGATTGATGGCGGATATATTGGACGTCTAGATCGAGGAGATGCTGCTATG
TTTGCTTGGGGTGCTTCTTTGTTTGCTCTTACCTTGGCGGATCAAAGTAT
CACAGACGAACTTTTTCCGAATATTAGCTTTGCTTGTGGCATGCTGTATC
ACAAGTTGATCACTTCTTCAAATGGCGTAATTGCTTCGCAGAGTGATGAG
TTGGAAGGTCGCTTTCCATCTGGCACACATAATTTATCTACAAACTGTAT
TGCCATTATGGCGTTTGAGGCGGCTGCACAGGTTGCTATCCTCGCAAAAG
ATGCGTCTTTGAGGGATCAATACCGATCAGCTGCACGAACATTACGCATC
AGCACTCATCAGTATTTCAGGTGTGATGACGAAAGAACGTATTCTTATTA
TAAACATTGCCAAGATGCCAGAGGATGGACATGTCTCACAGCTTTGGCAG
AACTTGCTCAAGGTGAAAGAGCTCTTGAATATTGTCTCAATCAACTGTGG
GTTGATGATGGTGTGCTCACATCAAATGCTCACAGTGTTGTCTGGGACCG
CACCACGCTGTATGCCATACGTGCTGCCTTCCGCGTCGGTCTTGTCGATG
TTGCTACCAAACGACTGCAACAGTATGCGAAACGACGCCTTCGTAGCACA
CCTTCTGCTCCTTTTCCCGTGGAGAATAATGAGAGCTGGGCACAATTGTC
GGCTGAAAGTGCGCTGTTTGTTCGCGTTATCGTGGAAGGCTTGCTTGGAA
TCGACGTTTTAAGTGAAAGACGCTTGCTCTTTAGACCAAGATGTCCGCAC
GCATGGCCCGGTTACACGCTTGAAAATGTGTATTTCGCAGATGTGTGTGT
GACGTTTCGCGTGCAAGTTGTGGATGGGCAAATGTCCGTTCAGGTGGAAT
CGACGGATGGAGGTTGTCAAACTCATGTTGATAACGGACATCTATTACTC
CGTCTTCCTCCACCCCCTTCCAGTCCAGAGTTTACTCATCTTACAAACCA
GCAGTATACGACTATACGTAGTTCGTCGTGA

protein sequence of Gcaud3875.t1

>Gcaud3875.t1 ID=Gcaud3875.t1|Name=Gcaud3875.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=627bp
MAEWTPDVTSRPLSLSLSAVPGLQAPRSSIELCGLRASAIVTFSARALHS
VLAIFPTRFVNPAHPRGYLRTELQFDTQLSPTRIRYDGVCVSLVDAHNVT
QSFFVSPSQPAVYCTFTFSAAQVEQEQLRKPTVTTVLQHATHHVFKQHVW
VSHSRLLIKYSCLQTQSLSVPFADLLLRTNLVYEWTSPVSLQCPDSNISL
LNHFSKIRTQECVFNASKLGLVHSPTGGMFYCGVWCNDQAEYAAPALAYL
GGPHSRARQCALSSLRVLANYFEFEPPSIPYSVEIDGGYIGRLDRGDAAM
FAWGASLFALTLADQSITDELFPNISFACGMLYHKLITSSNGVIASQSDE
LEGRFPSGTHNLSTNCIAIMAFEAAAQVAILAKDASLRDQYRSAARTLRI
STHQYFRCDDERTYSYYKHCQDARGWTCLTALAELAQGERALEYCLNQLW
VDDGVLTSNAHSVVWDRTTLYAIRAAFRVGLVDVATKRLQQYAKRRLRST
PSAPFPVENNESWAQLSAESALFVRVIVEGLLGIDVLSERRLLFRPRCPH
AWPGYTLENVYFADVCVTFRVQVVDGQMSVQVESTDGGCQTHVDNGHLLL
RLPPPPSSPEFTHLTNQQYTTIRSSS*

mRNA from alignment at NODE_54_length_62775_cov_4.630257:15275..17155-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3875.t1 ID=Gcaud3875.t1|Name=Gcaud3875.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1881bp|location=Sequence derived from alignment at NODE_54_length_62775_cov_4.630257:15275..17155- (Gracilaria caudata M_176_S67 male)
ATGGCCGAGTGGACGCCCGACGTCACCTCCCGACCGCTCTCGCTCTCGCT
TTCCGCAGTGCCCGGCTTGCAGGCGCCGCGCTCCTCCATCGAACTTTGCG
GACTTCGCGCTTCCGCCATCGTCACGTTTTCTGCGCGTGCGCTGCACTCC
GTGTTGGCCATCTTTCCTACCCGATTTGTAAACCCCGCGCATCCTAGGGG
CTATCTACGCACCGAGCTTCAGTTCGATACGCAGTTGTCACCAACCCGAA
TCCGCTATGACGGCGTGTGTGTGTCGCTCGTGGATGCTCACAATGTCACC
CAGTCGTTCTTCGTATCGCCCTCACAACCGGCCGTATACTGTACCTTCAC
GTTTTCCGCTGCGCAGGTTGAGCAGGAGCAGCTCAGGAAACCGACTGTTA
CCACCGTGCTTCAACACGCTACGCACCACGTTTTCAAGCAGCATGTGTGG
GTGTCGCACTCGCGTCTCTTGATTAAGTACAGCTGCTTGCAGACTCAGTC
TCTTTCTGTCCCGTTTGCGGACCTGCTTCTTCGAACAAATCTTGTTTACG
AATGGACCTCTCCGGTTTCTCTCCAATGCCCTGACAGTAACATCAGTCTG
CTCAACCACTTCTCGAAGATTAGAACGCAGGAATGTGTGTTCAATGCCTC
CAAATTGGGACTCGTTCACTCGCCCACTGGTGGTATGTTCTATTGTGGCG
TTTGGTGCAACGATCAGGCTGAATACGCTGCGCCGGCTCTGGCCTATTTG
GGCGGCCCCCACTCCAGAGCTAGACAGTGTGCTCTCAGTTCTCTGCGCGT
TCTGGCAAACTATTTTGAGTTTGAGCCCCCGAGCATTCCGTATAGCGTCG
AGATTGATGGCGGATATATTGGACGTCTAGATCGAGGAGATGCTGCTATG
TTTGCTTGGGGTGCTTCTTTGTTTGCTCTTACCTTGGCGGATCAAAGTAT
CACAGACGAACTTTTTCCGAATATTAGCTTTGCTTGTGGCATGCTGTATC
ACAAGTTGATCACTTCTTCAAATGGCGTAATTGCTTCGCAGAGTGATGAG
TTGGAAGGTCGCTTTCCATCTGGCACACATAATTTATCTACAAACTGTAT
TGCCATTATGGCGTTTGAGGCGGCTGCACAGGTTGCTATCCTCGCAAAAG
ATGCGTCTTTGAGGGATCAATACCGATCAGCTGCACGAACATTACGCATC
AGCACTCATCAGTATTTCAGGTGTGATGACGAAAGAACGTATTCTTATTA
TAAACATTGCCAAGATGCCAGAGGATGGACATGTCTCACAGCTTTGGCAG
AACTTGCTCAAGGTGAAAGAGCTCTTGAATATTGTCTCAATCAACTGTGG
GTTGATGATGGTGTGCTCACATCAAATGCTCACAGTGTTGTCTGGGACCG
CACCACGCTGTATGCCATACGTGCTGCCTTCCGCGTCGGTCTTGTCGATG
TTGCTACCAAACGACTGCAACAGTATGCGAAACGACGCCTTCGTAGCACA
CCTTCTGCTCCTTTTCCCGTGGAGAATAATGAGAGCTGGGCACAATTGTC
GGCTGAAAGTGCGCTGTTTGTTCGCGTTATCGTGGAAGGCTTGCTTGGAA
TCGACGTTTTAAGTGAAAGACGCTTGCTCTTTAGACCAAGATGTCCGCAC
GCATGGCCCGGTTACACGCTTGAAAATGTGTATTTCGCAGATGTGTGTGT
GACGTTTCGCGTGCAAGTTGTGGATGGGCAAATGTCCGTTCAGGTGGAAT
CGACGGATGGAGGTTGTCAAACTCATGTTGATAACGGACATCTATTACTC
CGTCTTCCTCCACCCCCTTCCAGTCCAGAGTTTACTCATCTTACAAACCA
GCAGTATACGACTATACGTAGTTCGTCGTGA

Coding sequence (CDS) from alignment at NODE_54_length_62775_cov_4.630257:15275..17155-

>Gcaud3875.t1 ID=Gcaud3875.t1|Name=Gcaud3875.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1881bp|location=Sequence derived from alignment at NODE_54_length_62775_cov_4.630257:15275..17155- (Gracilaria caudata M_176_S67 male)
ATGGCCGAGTGGACGCCCGACGTCACCTCCCGACCGCTCTCGCTCTCGCT
TTCCGCAGTGCCCGGCTTGCAGGCGCCGCGCTCCTCCATCGAACTTTGCG
GACTTCGCGCTTCCGCCATCGTCACGTTTTCTGCGCGTGCGCTGCACTCC
GTGTTGGCCATCTTTCCTACCCGATTTGTAAACCCCGCGCATCCTAGGGG
CTATCTACGCACCGAGCTTCAGTTCGATACGCAGTTGTCACCAACCCGAA
TCCGCTATGACGGCGTGTGTGTGTCGCTCGTGGATGCTCACAATGTCACC
CAGTCGTTCTTCGTATCGCCCTCACAACCGGCCGTATACTGTACCTTCAC
GTTTTCCGCTGCGCAGGTTGAGCAGGAGCAGCTCAGGAAACCGACTGTTA
CCACCGTGCTTCAACACGCTACGCACCACGTTTTCAAGCAGCATGTGTGG
GTGTCGCACTCGCGTCTCTTGATTAAGTACAGCTGCTTGCAGACTCAGTC
TCTTTCTGTCCCGTTTGCGGACCTGCTTCTTCGAACAAATCTTGTTTACG
AATGGACCTCTCCGGTTTCTCTCCAATGCCCTGACAGTAACATCAGTCTG
CTCAACCACTTCTCGAAGATTAGAACGCAGGAATGTGTGTTCAATGCCTC
CAAATTGGGACTCGTTCACTCGCCCACTGGTGGTATGTTCTATTGTGGCG
TTTGGTGCAACGATCAGGCTGAATACGCTGCGCCGGCTCTGGCCTATTTG
GGCGGCCCCCACTCCAGAGCTAGACAGTGTGCTCTCAGTTCTCTGCGCGT
TCTGGCAAACTATTTTGAGTTTGAGCCCCCGAGCATTCCGTATAGCGTCG
AGATTGATGGCGGATATATTGGACGTCTAGATCGAGGAGATGCTGCTATG
TTTGCTTGGGGTGCTTCTTTGTTTGCTCTTACCTTGGCGGATCAAAGTAT
CACAGACGAACTTTTTCCGAATATTAGCTTTGCTTGTGGCATGCTGTATC
ACAAGTTGATCACTTCTTCAAATGGCGTAATTGCTTCGCAGAGTGATGAG
TTGGAAGGTCGCTTTCCATCTGGCACACATAATTTATCTACAAACTGTAT
TGCCATTATGGCGTTTGAGGCGGCTGCACAGGTTGCTATCCTCGCAAAAG
ATGCGTCTTTGAGGGATCAATACCGATCAGCTGCACGAACATTACGCATC
AGCACTCATCAGTATTTCAGGTGTGATGACGAAAGAACGTATTCTTATTA
TAAACATTGCCAAGATGCCAGAGGATGGACATGTCTCACAGCTTTGGCAG
AACTTGCTCAAGGTGAAAGAGCTCTTGAATATTGTCTCAATCAACTGTGG
GTTGATGATGGTGTGCTCACATCAAATGCTCACAGTGTTGTCTGGGACCG
CACCACGCTGTATGCCATACGTGCTGCCTTCCGCGTCGGTCTTGTCGATG
TTGCTACCAAACGACTGCAACAGTATGCGAAACGACGCCTTCGTAGCACA
CCTTCTGCTCCTTTTCCCGTGGAGAATAATGAGAGCTGGGCACAATTGTC
GGCTGAAAGTGCGCTGTTTGTTCGCGTTATCGTGGAAGGCTTGCTTGGAA
TCGACGTTTTAAGTGAAAGACGCTTGCTCTTTAGACCAAGATGTCCGCAC
GCATGGCCCGGTTACACGCTTGAAAATGTGTATTTCGCAGATGTGTGTGT
GACGTTTCGCGTGCAAGTTGTGGATGGGCAAATGTCCGTTCAGGTGGAAT
CGACGGATGGAGGTTGTCAAACTCATGTTGATAACGGACATCTATTACTC
CGTCTTCCTCCACCCCCTTCCAGTCCAGAGTTTACTCATCTTACAAACCA
GCAGTATACGACTATACGTAGTTCGTCGTGA