Gcaud3877.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3877.t1
Unique NameGcaud3877.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length167
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_54_length_62775_cov_4.630257contigNODE_54_length_62775_cov_4.630257:18858..19527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3877Gcaud3877Gracilaria caudata M_176_S67 malegeneNODE_54_length_62775_cov_4.630257 18858..19527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3877.t1Gcaud3877.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_54_length_62775_cov_4.630257 18858..19527 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3877.t1.stop1Gcaud3877.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_54_length_62775_cov_4.630257 18858..18860 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3877.t1.CDS1Gcaud3877.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_54_length_62775_cov_4.630257 18858..18910 -
Gcaud3877.t1.CDS2Gcaud3877.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_54_length_62775_cov_4.630257 19005..19320 -
Gcaud3877.t1.CDS3Gcaud3877.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_54_length_62775_cov_4.630257 19396..19527 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3877.t1.exon1Gcaud3877.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_54_length_62775_cov_4.630257 18858..18910 -
Gcaud3877.t1.exon2Gcaud3877.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_54_length_62775_cov_4.630257 19005..19320 -
Gcaud3877.t1.exon3Gcaud3877.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_54_length_62775_cov_4.630257 19396..19527 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3877.t1.intron1Gcaud3877.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_54_length_62775_cov_4.630257 18911..19004 -
Gcaud3877.t1.intron2Gcaud3877.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_54_length_62775_cov_4.630257 19321..19395 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3877.t1.start1Gcaud3877.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_54_length_62775_cov_4.630257 19525..19527 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3877.t1 ID=Gcaud3877.t1|Name=Gcaud3877.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=167bp
MMQQLSTFVIPTKISATPAFRTCVARVFSKFDTNDNGTIDSNELTVAMCH
VHYNLARHCPGLTQPPTPESISELMKKHDKDSSSTLTEEEFFDMAVEWFD
QSGMLFIQQMLLTSLLSMVVIPGTASILHEKVPFGKRIPKLIFKVLFGVA
LKVVATNISMSRKASE*
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spliced messenger RNA

>Gcaud3877.t1 ID=Gcaud3877.t1|Name=Gcaud3877.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=501bp|location=Sequence derived from alignment at NODE_54_length_62775_cov_4.630257:18858..19527- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCAACAACTTAGTACCTTCGTCATTCCCACCAAAATCTCCGCCAC
TCCCGCATTCCGAACATGTGTGGCAAGAGTGTTCTCCAAGTTTGACACCA
ACGACAATGGCACCATCGACTCTAACGAACTGACAGTTGCCATGTGTCAT
GTACATTACAATCTCGCTCGTCATTGCCCGGGTTTAACGCAGCCGCCTAC
GCCGGAGTCCATTTCAGAACTGATGAAGAAGCACGACAAAGACTCTTCAT
CCACGCTTACCGAAGAGGAGTTTTTCGATATGGCCGTGGAATGGTTTGAT
CAAAGTGGCATGCTATTCATACAACAAATGTTGCTCACGTCTTTGTTGTC
AATGGTTGTCATACCAGGCACGGCATCCATCCTACACGAAAAGGTTCCGT
TTGGGAAACGAATTCCAAAGTTGATCTTCAAAGTATTATTTGGAGTTGCT
TTGAAAGTAGTGGCGACGAATATATCAATGTCAAGAAAAGCAAGTGAATA
A
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protein sequence of Gcaud3877.t1

>Gcaud3877.t1 ID=Gcaud3877.t1|Name=Gcaud3877.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=167bp
MMQQLSTFVIPTKISATPAFRTCVARVFSKFDTNDNGTIDSNELTVAMCH
VHYNLARHCPGLTQPPTPESISELMKKHDKDSSSTLTEEEFFDMAVEWFD
QSGMLFIQQMLLTSLLSMVVIPGTASILHEKVPFGKRIPKLIFKVLFGVA
LKVVATNISMSRKASE*
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mRNA from alignment at NODE_54_length_62775_cov_4.630257:18858..19527-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3877.t1 ID=Gcaud3877.t1|Name=Gcaud3877.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=670bp|location=Sequence derived from alignment at NODE_54_length_62775_cov_4.630257:18858..19527- (Gracilaria caudata M_176_S67 male)
ATGATGCAACAACTTAGTACCTTCGTCATTCCCACCAAAATCTCCGCCAC
TCCCGCATTCCGAACATGTGTGGCAAGAGTGTTCTCCAAGTTTGACACCA
ACGACAATGGCACCATCGACTCTAACGAACTGGTAAGAACAAGCAACACA
GAGCAGCCATCTTGAATCACACCCACCCAAAGCACTAACCAAGAACGAAA
ACAACAGACAGTTGCCATGTGTCATGTACATTACAATCTCGCTCGTCATT
GCCCGGGTTTAACGCAGCCGCCTACGCCGGAGTCCATTTCAGAACTGATG
AAGAAGCACGACAAAGACTCTTCATCCACGCTTACCGAAGAGGAGTTTTT
CGATATGGCCGTGGAATGGTTTGATCAAAGTGGCATGCTATTCATACAAC
AAATGTTGCTCACGTCTTTGTTGTCAATGGTTGTCATACCAGGCACGGCA
TCCATCCTACACGAAAAGGTTCCGTTTGGGAAACGAATTCCAAAGTTGAT
CTTCAAAGTATTATTTGGAGTTGGTACGTAACTATCATACATTCTTTGAT
ACAAACGAACAAAACAAAAAAATGGAATCTAACAGTTATGTGTTGATGTT
GTTGTCGTGGTGTTTAGCTTTGAAAGTAGTGGCGACGAATATATCAATGT
CAAGAAAAGCAAGTGAATAA
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Coding sequence (CDS) from alignment at NODE_54_length_62775_cov_4.630257:18858..19527-

>Gcaud3877.t1 ID=Gcaud3877.t1|Name=Gcaud3877.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=501bp|location=Sequence derived from alignment at NODE_54_length_62775_cov_4.630257:18858..19527- (Gracilaria caudata M_176_S67 male)
ATGATGCAACAACTTAGTACCTTCGTCATTCCCACCAAAATCTCCGCCAC
TCCCGCATTCCGAACATGTGTGGCAAGAGTGTTCTCCAAGTTTGACACCA
ACGACAATGGCACCATCGACTCTAACGAACTGACAGTTGCCATGTGTCAT
GTACATTACAATCTCGCTCGTCATTGCCCGGGTTTAACGCAGCCGCCTAC
GCCGGAGTCCATTTCAGAACTGATGAAGAAGCACGACAAAGACTCTTCAT
CCACGCTTACCGAAGAGGAGTTTTTCGATATGGCCGTGGAATGGTTTGAT
CAAAGTGGCATGCTATTCATACAACAAATGTTGCTCACGTCTTTGTTGTC
AATGGTTGTCATACCAGGCACGGCATCCATCCTACACGAAAAGGTTCCGT
TTGGGAAACGAATTCCAAAGTTGATCTTCAAAGTATTATTTGGAGTTGCT
TTGAAAGTAGTGGCGACGAATATATCAATGTCAAGAAAAGCAAGTGAATA
A
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