Gcaud3877.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3877.t1
Unique NameGcaud3877.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length167
Homology
BLAST of Gcaud3877.t1 vs. uniprot
Match: A0A2V3IP74_9FLOR (Caltractin n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IP74_9FLOR)

HSP 1 Score: 225 bits (574), Expect = 4.690e-73
Identity = 102/162 (62.96%), Postives = 135/162 (83.33%), Query Frame = 0
Query:    5 LSTFVIPTKISATPAFRTCVARVFSKFDTNDNGTIDSNELTVAMCHVHYNLARHCPGLTQPPTPESISELMKKHDKDSSSTLTEEEFFDMAVEWFDQSGMLFIQQMLLTSLLSMVVIPGTASILHEKVPFGKRIPKLIFKVLFGVALKVVATNISMSRKASE 166
            L   ++PTK+SATPAFR CV RVF+KFDTN N TID+ ELTVAMCH+H++L +H PGLT+PPT + ++++M++HDKD SSTL E+EFFDMAV+WFD SG +F Q+++LTSL+SMV+IP TA++LH+K+P  +R+P ++FKVLFGVALKV ATNI  S K  E
Sbjct:    3 LGNAIMPTKLSATPAFRACVTRVFNKFDTNGNHTIDATELTVAMCHLHFSLVKHSPGLTEPPTSDDVAKIMREHDKDGSSTLDEQEFFDMAVKWFDHSGAMFCQRLILTSLMSMVIIPETANLLHKKIPLARRLPNILFKVLFGVALKVAATNIQSSSKDDE 164          
BLAST of Gcaud3877.t1 vs. uniprot
Match: A0A1X6NV29_PORUM (EF-hand domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NV29_PORUM)

HSP 1 Score: 101 bits (252), Expect = 3.510e-24
Identity = 55/166 (33.13%), Postives = 90/166 (54.22%), Query Frame = 0
Query:    4 QLSTFVIPT---KISATPAFRTCVARVFSKFDTNDNGTIDSNELTVAMCHVHYNLARHCPGLTQPPTPESISELMKKHDKDSSSTLTEEEFFDMAVEWFDQSGMLFIQQMLLTSLLSMVVIPGTASILHEKVPFGKRIPKLIFKVLFGVALKVVATNISMSRKASE 166
            +L  F +PT   + S T AF   V+ VF K   N  G ID   L VAMCH+H+ L +H PG+T+ PT E++ E++   D +    L E EF   A EW+D +G +++ +  L S ++ V +P  A+    K+P G  +PK ++    G+    V+T ++   + ++
Sbjct:    7 RLPAFRVPTPGRRFSDTSAFDKTVSAVFRKVAVN--GVIDEMALVVAMCHLHFKLKKHVPGVTRTPTREAVQEVLGGFDANRDGVLDETEFHRFAKEWWDNTGAIWVYRAALVSAVTFVAVPELAAAARLKIPHGTDVPKGVWVAAAGLLFNAVSTAVAARMERAD 170          
BLAST of Gcaud3877.t1 vs. uniprot
Match: A0A7S1X9E6_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1X9E6_9RHOD)

HSP 1 Score: 77.8 bits (190), Expect = 5.830e-15
Identity = 45/143 (31.47%), Postives = 75/143 (52.45%), Query Frame = 0
Query:   13 KISATPAFRTCVARVFSKFDTNDNGTIDSNELTVAMCHVHYNLARHCPGLTQPPTPESISELMKKHDKDSSSTLTEEEFFDMAVEWFDQSGMLFIQQMLLTSLLSMVVIPGTASILHEKVPFGKRIPK-LIFKVLFGVALKVV 154
            +++ + AF+  V   F K D N++GTID +E+T+AMCH  + L++  PG+ + PT   + +   +      + +  EEF     EW  ++   F+  +     ++ VVIP  A +L  +V    R+PK LI   L  VA KV+
Sbjct:   22 EVTKSDAFKKSVGVAFVKVDRNNSGTIDKDEMTLAMCHFVFQLSKRIPGIAEVPTRSEVDDFFDEFAGPGKTEMNLEEFERFVAEWVKRNSSNFLALVSTGLAMNFVVIPACAGVLKREVDILHRVPKALICMGLTLVAKKVM 164          
The following BLAST results are available for this feature:
BLAST of Gcaud3877.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IP74_9FLOR4.690e-7362.96Caltractin n=1 Tax=Gracilariopsis chorda TaxID=448... [more]
A0A1X6NV29_PORUM3.510e-2433.13EF-hand domain-containing protein n=1 Tax=Porphyra... [more]
A0A7S1X9E6_9RHOD5.830e-1531.47Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 70..98
e-value: 8.1
score: 10.4
coord: 23..51
e-value: 1.2
score: 17.1
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 26..94
e-value: 1.9E-8
score: 34.6
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 19..54
score: 10.663839
IPR002048EF-hand domainCDDcd00051EFhcoord: 26..94
e-value: 1.53794E-9
score: 49.4685
NoneNo IPR availableGENE3D1.10.238.10coord: 1..104
e-value: 5.2E-13
score: 51.3
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 106..129
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 161..166
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 141..160
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 130..140
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..105
NoneNo IPR availableTMHMMTMhelixcoord: 141..160
NoneNo IPR availableTMHMMTMhelixcoord: 106..128
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 32..44
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 19..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_54_length_62775_cov_4.630257contigNODE_54_length_62775_cov_4.630257:18858..19527 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3877.t1Gcaud3877.t1Gracilaria caudata M_176_S67 malemRNANODE_54_length_62775_cov_4.630257 18858..19527 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3877.t1 ID=Gcaud3877.t1|Name=Gcaud3877.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=167bp
MMQQLSTFVIPTKISATPAFRTCVARVFSKFDTNDNGTIDSNELTVAMCH
VHYNLARHCPGLTQPPTPESISELMKKHDKDSSSTLTEEEFFDMAVEWFD
QSGMLFIQQMLLTSLLSMVVIPGTASILHEKVPFGKRIPKLIFKVLFGVA
LKVVATNISMSRKASE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair