Gcaud1219.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1219.t1
Unique Name	Gcaud1219.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	508

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_547_length_22469_cov_5.357315	contig	NODE_547_length_22469_cov_5.357315:19751..21274 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1219	Gcaud1219	Gracilaria caudata M_176_S67 male	gene	NODE_547_length_22469_cov_5.357315 19751..21274 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1219.t1.stop1	Gcaud1219.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_547_length_22469_cov_5.357315 19751..19753 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1219.t1.CDS1	Gcaud1219.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_547_length_22469_cov_5.357315 19751..21274 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1219.t1.exon1	Gcaud1219.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_547_length_22469_cov_5.357315 19751..21274 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1219.t1.start1	Gcaud1219.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_547_length_22469_cov_5.357315 21272..21274 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1219.t1	Gcaud1219.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_547_length_22469_cov_5.357315 19751..21274 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_547_length_22469_cov_5.357315:19751..21274-
coding sequence from alignment at NODE_547_length_22469_cov_5.357315:19751..21274-

mRNA sequence

>Gcaud1219.t1 ID=Gcaud1219.t1|Name=Gcaud1219.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=508bp
MSEPSFLGFGAFETTAFLTSLIVAWYSLISNPSGRQSAFDSAEYQIFAGW
RLALLAIITHIILMTVVIIQQAGASQVDSSARVWLLLLMIAPWAPIAGKV
RDTLTSGARVRQMMKRRLVRNELSAILRDRFKFGQRSIAMPVVIYHASGR
IPTFIIQTLNEQEGLKDFIKDLKHEAMLAAQLEESHSLELGSLWAMNQSL
QPTSVSRLSLFVWKVVSNIDVLSRLWTVRACPVRVDVMPEIKSIVERARY
LDLADLLQQGGTISDELAQRGLKRFCEKCRAAIRCAVEIFLESSERGHTD
MRAGEWLKNVGMDWRGSFERVIDVMWEACFMDSKALRVQGDDNDQSPSFN
DRTKVTTTKMLALLFLMARSVVSTKDDTAVFDDICIVIADGPFRREWWSQ
YWSIFAHKLRHRNNDHIVVDASCRSTFKACLREMVDQDMLKIVDHLLENG
IHSGMCGSVRCFLNTAQLVAKKYGPTRRRQHSKNALQQDTKKEKRSSGGM
VSIDLSS*

spliced messenger RNA

>Gcaud1219.t1 ID=Gcaud1219.t1|Name=Gcaud1219.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1524bp|location=Sequence derived from alignment at NODE_547_length_22469_cov_5.357315:19751..21274- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGAGCCATCATTCCTGGGCTTCGGTGCGTTTGAAACCACCGCATT
CCTTACTTCCCTCATCGTTGCATGGTATTCGCTCATATCCAACCCGTCCG
GTCGACAAAGCGCGTTCGACAGCGCCGAGTACCAAATCTTTGCCGGATGG
CGATTGGCTCTCCTAGCAATCATAACGCACATCATCCTCATGACCGTAGT
TATCATTCAACAAGCCGGCGCGTCGCAAGTGGATTCAAGCGCTCGAGTAT
GGCTATTGCTTCTTATGATTGCACCATGGGCACCCATTGCCGGAAAGGTC
CGTGACACTCTTACGTCCGGAGCTCGAGTTCGACAAATGATGAAACGACG
ACTGGTACGAAATGAACTTTCGGCAATCCTCAGAGATCGTTTCAAATTCG
GACAACGAAGTATTGCAATGCCTGTTGTTATTTATCATGCTAGTGGACGC
ATTCCCACTTTCATTATCCAAACGCTGAATGAACAAGAAGGCCTCAAAGA
TTTCATCAAGGATTTAAAGCACGAGGCGATGTTGGCTGCACAATTGGAGG
AGAGTCATTCCTTGGAACTGGGATCTTTGTGGGCAATGAATCAGAGTTTA
CAACCTACTTCTGTTTCACGTTTATCTCTGTTTGTGTGGAAGGTTGTTTC
GAACATTGATGTTCTGTCAAGGTTGTGGACTGTACGTGCATGTCCTGTGA
GAGTGGATGTGATGCCGGAAATCAAGTCCATTGTAGAACGTGCCAGGTAC
TTGGATTTGGCCGATCTATTACAACAAGGAGGCACTATCAGTGATGAACT
GGCTCAACGAGGGTTGAAACGATTCTGCGAAAAATGTCGCGCTGCGATTC
GATGCGCTGTGGAAATTTTTTTGGAGAGCTCAGAAAGAGGACACACTGAT
ATGAGAGCCGGAGAGTGGTTAAAGAATGTAGGTATGGATTGGCGAGGAAG
CTTCGAAAGGGTGATCGATGTCATGTGGGAAGCCTGTTTCATGGATTCCA
AAGCGTTGCGGGTACAGGGAGATGACAATGATCAAAGCCCATCATTCAAT
GATCGGACGAAGGTTACCACGACGAAGATGCTGGCACTACTGTTTTTGAT
GGCCCGCAGTGTGGTAAGTACCAAAGATGATACTGCCGTCTTCGATGATA
TTTGCATTGTTATCGCAGATGGCCCTTTTCGGAGAGAATGGTGGAGCCAG
TATTGGAGCATATTCGCTCATAAACTGCGCCACCGGAACAACGACCACAT
TGTGGTGGATGCTTCCTGTCGAAGTACGTTCAAAGCGTGCTTACGTGAGA
TGGTAGATCAGGATATGCTCAAAATTGTTGATCATCTTTTGGAAAACGGT
ATCCACAGTGGTATGTGTGGAAGTGTTCGATGCTTTCTTAACACTGCACA
ATTAGTGGCGAAGAAGTATGGACCAACTCGGCGTAGACAACATTCGAAGA
ATGCGTTACAACAAGACACGAAGAAGGAGAAGCGCTCAAGTGGCGGAATG
GTGAGTATTGATCTCAGCTCATGA

protein sequence of Gcaud1219.t1

>Gcaud1219.t1 ID=Gcaud1219.t1|Name=Gcaud1219.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=508bp
MSEPSFLGFGAFETTAFLTSLIVAWYSLISNPSGRQSAFDSAEYQIFAGW
RLALLAIITHIILMTVVIIQQAGASQVDSSARVWLLLLMIAPWAPIAGKV
RDTLTSGARVRQMMKRRLVRNELSAILRDRFKFGQRSIAMPVVIYHASGR
IPTFIIQTLNEQEGLKDFIKDLKHEAMLAAQLEESHSLELGSLWAMNQSL
QPTSVSRLSLFVWKVVSNIDVLSRLWTVRACPVRVDVMPEIKSIVERARY
LDLADLLQQGGTISDELAQRGLKRFCEKCRAAIRCAVEIFLESSERGHTD
MRAGEWLKNVGMDWRGSFERVIDVMWEACFMDSKALRVQGDDNDQSPSFN
DRTKVTTTKMLALLFLMARSVVSTKDDTAVFDDICIVIADGPFRREWWSQ
YWSIFAHKLRHRNNDHIVVDASCRSTFKACLREMVDQDMLKIVDHLLENG
IHSGMCGSVRCFLNTAQLVAKKYGPTRRRQHSKNALQQDTKKEKRSSGGM
VSIDLSS*

mRNA from alignment at NODE_547_length_22469_cov_5.357315:19751..21274-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1219.t1 ID=Gcaud1219.t1|Name=Gcaud1219.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1524bp|location=Sequence derived from alignment at NODE_547_length_22469_cov_5.357315:19751..21274- (Gracilaria caudata M_176_S67 male)
ATGTCCGAGCCATCATTCCTGGGCTTCGGTGCGTTTGAAACCACCGCATT
CCTTACTTCCCTCATCGTTGCATGGTATTCGCTCATATCCAACCCGTCCG
GTCGACAAAGCGCGTTCGACAGCGCCGAGTACCAAATCTTTGCCGGATGG
CGATTGGCTCTCCTAGCAATCATAACGCACATCATCCTCATGACCGTAGT
TATCATTCAACAAGCCGGCGCGTCGCAAGTGGATTCAAGCGCTCGAGTAT
GGCTATTGCTTCTTATGATTGCACCATGGGCACCCATTGCCGGAAAGGTC
CGTGACACTCTTACGTCCGGAGCTCGAGTTCGACAAATGATGAAACGACG
ACTGGTACGAAATGAACTTTCGGCAATCCTCAGAGATCGTTTCAAATTCG
GACAACGAAGTATTGCAATGCCTGTTGTTATTTATCATGCTAGTGGACGC
ATTCCCACTTTCATTATCCAAACGCTGAATGAACAAGAAGGCCTCAAAGA
TTTCATCAAGGATTTAAAGCACGAGGCGATGTTGGCTGCACAATTGGAGG
AGAGTCATTCCTTGGAACTGGGATCTTTGTGGGCAATGAATCAGAGTTTA
CAACCTACTTCTGTTTCACGTTTATCTCTGTTTGTGTGGAAGGTTGTTTC
GAACATTGATGTTCTGTCAAGGTTGTGGACTGTACGTGCATGTCCTGTGA
GAGTGGATGTGATGCCGGAAATCAAGTCCATTGTAGAACGTGCCAGGTAC
TTGGATTTGGCCGATCTATTACAACAAGGAGGCACTATCAGTGATGAACT
GGCTCAACGAGGGTTGAAACGATTCTGCGAAAAATGTCGCGCTGCGATTC
GATGCGCTGTGGAAATTTTTTTGGAGAGCTCAGAAAGAGGACACACTGAT
ATGAGAGCCGGAGAGTGGTTAAAGAATGTAGGTATGGATTGGCGAGGAAG
CTTCGAAAGGGTGATCGATGTCATGTGGGAAGCCTGTTTCATGGATTCCA
AAGCGTTGCGGGTACAGGGAGATGACAATGATCAAAGCCCATCATTCAAT
GATCGGACGAAGGTTACCACGACGAAGATGCTGGCACTACTGTTTTTGAT
GGCCCGCAGTGTGGTAAGTACCAAAGATGATACTGCCGTCTTCGATGATA
TTTGCATTGTTATCGCAGATGGCCCTTTTCGGAGAGAATGGTGGAGCCAG
TATTGGAGCATATTCGCTCATAAACTGCGCCACCGGAACAACGACCACAT
TGTGGTGGATGCTTCCTGTCGAAGTACGTTCAAAGCGTGCTTACGTGAGA
TGGTAGATCAGGATATGCTCAAAATTGTTGATCATCTTTTGGAAAACGGT
ATCCACAGTGGTATGTGTGGAAGTGTTCGATGCTTTCTTAACACTGCACA
ATTAGTGGCGAAGAAGTATGGACCAACTCGGCGTAGACAACATTCGAAGA
ATGCGTTACAACAAGACACGAAGAAGGAGAAGCGCTCAAGTGGCGGAATG
GTGAGTATTGATCTCAGCTCATGA

Coding sequence (CDS) from alignment at NODE_547_length_22469_cov_5.357315:19751..21274-

>Gcaud1219.t1 ID=Gcaud1219.t1|Name=Gcaud1219.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1524bp|location=Sequence derived from alignment at NODE_547_length_22469_cov_5.357315:19751..21274- (Gracilaria caudata M_176_S67 male)
ATGTCCGAGCCATCATTCCTGGGCTTCGGTGCGTTTGAAACCACCGCATT
CCTTACTTCCCTCATCGTTGCATGGTATTCGCTCATATCCAACCCGTCCG
GTCGACAAAGCGCGTTCGACAGCGCCGAGTACCAAATCTTTGCCGGATGG
CGATTGGCTCTCCTAGCAATCATAACGCACATCATCCTCATGACCGTAGT
TATCATTCAACAAGCCGGCGCGTCGCAAGTGGATTCAAGCGCTCGAGTAT
GGCTATTGCTTCTTATGATTGCACCATGGGCACCCATTGCCGGAAAGGTC
CGTGACACTCTTACGTCCGGAGCTCGAGTTCGACAAATGATGAAACGACG
ACTGGTACGAAATGAACTTTCGGCAATCCTCAGAGATCGTTTCAAATTCG
GACAACGAAGTATTGCAATGCCTGTTGTTATTTATCATGCTAGTGGACGC
ATTCCCACTTTCATTATCCAAACGCTGAATGAACAAGAAGGCCTCAAAGA
TTTCATCAAGGATTTAAAGCACGAGGCGATGTTGGCTGCACAATTGGAGG
AGAGTCATTCCTTGGAACTGGGATCTTTGTGGGCAATGAATCAGAGTTTA
CAACCTACTTCTGTTTCACGTTTATCTCTGTTTGTGTGGAAGGTTGTTTC
GAACATTGATGTTCTGTCAAGGTTGTGGACTGTACGTGCATGTCCTGTGA
GAGTGGATGTGATGCCGGAAATCAAGTCCATTGTAGAACGTGCCAGGTAC
TTGGATTTGGCCGATCTATTACAACAAGGAGGCACTATCAGTGATGAACT
GGCTCAACGAGGGTTGAAACGATTCTGCGAAAAATGTCGCGCTGCGATTC
GATGCGCTGTGGAAATTTTTTTGGAGAGCTCAGAAAGAGGACACACTGAT
ATGAGAGCCGGAGAGTGGTTAAAGAATGTAGGTATGGATTGGCGAGGAAG
CTTCGAAAGGGTGATCGATGTCATGTGGGAAGCCTGTTTCATGGATTCCA
AAGCGTTGCGGGTACAGGGAGATGACAATGATCAAAGCCCATCATTCAAT
GATCGGACGAAGGTTACCACGACGAAGATGCTGGCACTACTGTTTTTGAT
GGCCCGCAGTGTGGTAAGTACCAAAGATGATACTGCCGTCTTCGATGATA
TTTGCATTGTTATCGCAGATGGCCCTTTTCGGAGAGAATGGTGGAGCCAG
TATTGGAGCATATTCGCTCATAAACTGCGCCACCGGAACAACGACCACAT
TGTGGTGGATGCTTCCTGTCGAAGTACGTTCAAAGCGTGCTTACGTGAGA
TGGTAGATCAGGATATGCTCAAAATTGTTGATCATCTTTTGGAAAACGGT
ATCCACAGTGGTATGTGTGGAAGTGTTCGATGCTTTCTTAACACTGCACA
ATTAGTGGCGAAGAAGTATGGACCAACTCGGCGTAGACAACATTCGAAGA
ATGCGTTACAACAAGACACGAAGAAGGAGAAGCGCTCAAGTGGCGGAATG
GTGAGTATTGATCTCAGCTCATGA