Gcaud1218.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1218.t1
Unique Name	Gcaud1218.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	575

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_547_length_22469_cov_5.357315	contig	NODE_547_length_22469_cov_5.357315:12435..14159 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1218	Gcaud1218	Gracilaria caudata M_176_S67 male	gene	NODE_547_length_22469_cov_5.357315 12435..14159 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1218.t1.start1	Gcaud1218.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_547_length_22469_cov_5.357315 12435..12437 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1218.t1.CDS1	Gcaud1218.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_547_length_22469_cov_5.357315 12435..14159 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1218.t1.exon1	Gcaud1218.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_547_length_22469_cov_5.357315 12435..14159 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1218.t1.stop1	Gcaud1218.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_547_length_22469_cov_5.357315 14157..14159 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1218.t1	Gcaud1218.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_547_length_22469_cov_5.357315 12435..14159 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_547_length_22469_cov_5.357315:12435..14159+
coding sequence from alignment at NODE_547_length_22469_cov_5.357315:12435..14159+

mRNA sequence

>Gcaud1218.t1 ID=Gcaud1218.t1|Name=Gcaud1218.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=575bp
MIVLGVVSYLFRSLRPLWRVLGGVGPFFLALDADAGDLYFVYYIKTGLVL
LMDALLLYQFFDTNGFEEDTPSSHAIFAVISILFIASCVITFVGHRLRDR
IVVTRSTPAFTCNELVPVDPCVFGTPYADFEEKTIRTPLKPVDLRDAWED
DGHGGRRPLTPKEVHTGVLRTCFITQYVMSRIYKSPKNHIYVFSMVAWYR
TRVFLLLAALTGLCDVGNDLFRTDGTTKDVASKAILWLTLPSITIPALLK
IRFGTHARLNFLMCGLLPVTCDREMWLRIGVGPSDLYCALTNAVPAERVL
DSTIGLINGAGKSNVKVCSPKLARRASIDSLLRVSDYYVRVFDGRLFQMF
RPDTLKVVRGERYTVRDRNNVGGFDKGSARRYSHAEYDAENPEGDSDWWG
EWETWGGVLQVAKQSWDDEDRNFDALTDRSDCSAQKPRLQQSCISRCAGV
EKYRELLLRLLASAFGDGDISSVEEYERLKNKVETGVRCNGNDEHLLLCV
IAGAFVQGKLQTSQFRGLQAFLQRRSKTVWIPFKRRGSRSDLLLSERKSD
AVHSPDDVEVNTDNPSSETRSEDI*

spliced messenger RNA

>Gcaud1218.t1 ID=Gcaud1218.t1|Name=Gcaud1218.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1725bp|location=Sequence derived from alignment at NODE_547_length_22469_cov_5.357315:12435..14159+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGTGTTGGGAGTAGTTTCGTACCTTTTCCGCTCGCTCCGTCCGTT
ATGGCGAGTACTTGGCGGCGTTGGTCCTTTCTTCCTGGCATTGGACGCTG
ACGCTGGTGATCTCTACTTCGTCTATTACATCAAGACTGGTCTTGTATTA
CTAATGGATGCGCTCTTACTATATCAATTCTTCGACACAAATGGATTCGA
AGAAGACACTCCATCCTCCCACGCCATTTTCGCAGTTATCTCCATTCTCT
TCATTGCCTCTTGTGTCATTACTTTCGTCGGCCACAGACTGCGTGATCGC
ATCGTGGTGACTAGATCAACGCCGGCGTTCACCTGCAACGAACTTGTCCC
TGTTGATCCCTGTGTTTTTGGGACACCATACGCCGACTTCGAAGAAAAGA
CTATTCGTACACCTCTGAAGCCGGTCGATCTTCGTGACGCGTGGGAAGAC
GACGGCCACGGAGGTCGTCGTCCTCTCACACCGAAGGAAGTGCATACCGG
GGTGTTGCGCACATGCTTCATCACACAGTACGTCATGTCTCGCATTTACA
AGTCTCCAAAGAACCACATTTACGTCTTTTCGATGGTCGCATGGTACCGA
ACTCGAGTGTTTCTTCTGTTGGCGGCACTCACGGGACTGTGTGATGTGGG
CAATGACCTGTTCCGTACTGACGGTACTACCAAAGACGTGGCGTCCAAAG
CTATCTTGTGGCTCACGCTGCCGTCGATAACGATTCCAGCATTGCTCAAA
ATCCGCTTTGGAACGCACGCTAGACTCAATTTCTTGATGTGTGGACTTCT
TCCAGTTACGTGCGACCGCGAGATGTGGCTGCGAATTGGTGTAGGTCCAT
CTGATTTGTACTGTGCGCTGACCAACGCTGTGCCTGCTGAACGCGTGTTA
GATAGCACCATCGGGCTCATCAACGGCGCTGGCAAAAGCAACGTTAAAGT
GTGTTCACCGAAGCTTGCCCGTCGCGCGTCAATTGACTCTCTTTTGCGAG
TAAGCGATTACTACGTGCGCGTTTTCGATGGCAGGTTATTTCAAATGTTC
AGGCCAGATACATTGAAAGTAGTACGTGGGGAACGATACACGGTTCGCGA
CAGGAACAACGTCGGGGGATTCGATAAGGGGAGTGCAAGGCGATACTCTC
ACGCAGAATATGACGCCGAAAATCCAGAAGGAGATAGTGATTGGTGGGGC
GAATGGGAGACGTGGGGCGGTGTGCTGCAGGTTGCGAAGCAGTCTTGGGA
CGATGAAGACCGCAACTTTGATGCACTGACAGACAGAAGCGATTGTTCGG
CGCAAAAACCGAGACTGCAGCAGTCGTGTATATCGCGATGTGCCGGTGTT
GAAAAATACCGTGAGTTGTTACTGCGTCTACTGGCATCAGCGTTTGGGGA
CGGGGATATCAGCTCTGTAGAAGAATATGAGAGGCTTAAGAATAAGGTGG
AAACGGGGGTTCGTTGCAATGGGAACGACGAACATTTGCTACTGTGCGTT
ATTGCAGGCGCGTTTGTTCAGGGAAAGCTTCAAACGAGTCAGTTTCGTGG
TTTGCAGGCGTTTTTGCAGCGCAGGTCCAAAACGGTTTGGATACCTTTTA
AGCGCCGTGGCAGCCGTTCGGATTTGCTGCTGTCGGAGCGAAAGAGTGAT
GCTGTACACTCTCCTGACGACGTGGAGGTGAACACAGACAACCCGTCGAG
CGAGACAAGATCGGAAGACATTTAA

protein sequence of Gcaud1218.t1

>Gcaud1218.t1 ID=Gcaud1218.t1|Name=Gcaud1218.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=575bp
MIVLGVVSYLFRSLRPLWRVLGGVGPFFLALDADAGDLYFVYYIKTGLVL
LMDALLLYQFFDTNGFEEDTPSSHAIFAVISILFIASCVITFVGHRLRDR
IVVTRSTPAFTCNELVPVDPCVFGTPYADFEEKTIRTPLKPVDLRDAWED
DGHGGRRPLTPKEVHTGVLRTCFITQYVMSRIYKSPKNHIYVFSMVAWYR
TRVFLLLAALTGLCDVGNDLFRTDGTTKDVASKAILWLTLPSITIPALLK
IRFGTHARLNFLMCGLLPVTCDREMWLRIGVGPSDLYCALTNAVPAERVL
DSTIGLINGAGKSNVKVCSPKLARRASIDSLLRVSDYYVRVFDGRLFQMF
RPDTLKVVRGERYTVRDRNNVGGFDKGSARRYSHAEYDAENPEGDSDWWG
EWETWGGVLQVAKQSWDDEDRNFDALTDRSDCSAQKPRLQQSCISRCAGV
EKYRELLLRLLASAFGDGDISSVEEYERLKNKVETGVRCNGNDEHLLLCV
IAGAFVQGKLQTSQFRGLQAFLQRRSKTVWIPFKRRGSRSDLLLSERKSD
AVHSPDDVEVNTDNPSSETRSEDI*

mRNA from alignment at NODE_547_length_22469_cov_5.357315:12435..14159+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1218.t1 ID=Gcaud1218.t1|Name=Gcaud1218.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1725bp|location=Sequence derived from alignment at NODE_547_length_22469_cov_5.357315:12435..14159+ (Gracilaria caudata M_176_S67 male)
ATGATTGTGTTGGGAGTAGTTTCGTACCTTTTCCGCTCGCTCCGTCCGTT
ATGGCGAGTACTTGGCGGCGTTGGTCCTTTCTTCCTGGCATTGGACGCTG
ACGCTGGTGATCTCTACTTCGTCTATTACATCAAGACTGGTCTTGTATTA
CTAATGGATGCGCTCTTACTATATCAATTCTTCGACACAAATGGATTCGA
AGAAGACACTCCATCCTCCCACGCCATTTTCGCAGTTATCTCCATTCTCT
TCATTGCCTCTTGTGTCATTACTTTCGTCGGCCACAGACTGCGTGATCGC
ATCGTGGTGACTAGATCAACGCCGGCGTTCACCTGCAACGAACTTGTCCC
TGTTGATCCCTGTGTTTTTGGGACACCATACGCCGACTTCGAAGAAAAGA
CTATTCGTACACCTCTGAAGCCGGTCGATCTTCGTGACGCGTGGGAAGAC
GACGGCCACGGAGGTCGTCGTCCTCTCACACCGAAGGAAGTGCATACCGG
GGTGTTGCGCACATGCTTCATCACACAGTACGTCATGTCTCGCATTTACA
AGTCTCCAAAGAACCACATTTACGTCTTTTCGATGGTCGCATGGTACCGA
ACTCGAGTGTTTCTTCTGTTGGCGGCACTCACGGGACTGTGTGATGTGGG
CAATGACCTGTTCCGTACTGACGGTACTACCAAAGACGTGGCGTCCAAAG
CTATCTTGTGGCTCACGCTGCCGTCGATAACGATTCCAGCATTGCTCAAA
ATCCGCTTTGGAACGCACGCTAGACTCAATTTCTTGATGTGTGGACTTCT
TCCAGTTACGTGCGACCGCGAGATGTGGCTGCGAATTGGTGTAGGTCCAT
CTGATTTGTACTGTGCGCTGACCAACGCTGTGCCTGCTGAACGCGTGTTA
GATAGCACCATCGGGCTCATCAACGGCGCTGGCAAAAGCAACGTTAAAGT
GTGTTCACCGAAGCTTGCCCGTCGCGCGTCAATTGACTCTCTTTTGCGAG
TAAGCGATTACTACGTGCGCGTTTTCGATGGCAGGTTATTTCAAATGTTC
AGGCCAGATACATTGAAAGTAGTACGTGGGGAACGATACACGGTTCGCGA
CAGGAACAACGTCGGGGGATTCGATAAGGGGAGTGCAAGGCGATACTCTC
ACGCAGAATATGACGCCGAAAATCCAGAAGGAGATAGTGATTGGTGGGGC
GAATGGGAGACGTGGGGCGGTGTGCTGCAGGTTGCGAAGCAGTCTTGGGA
CGATGAAGACCGCAACTTTGATGCACTGACAGACAGAAGCGATTGTTCGG
CGCAAAAACCGAGACTGCAGCAGTCGTGTATATCGCGATGTGCCGGTGTT
GAAAAATACCGTGAGTTGTTACTGCGTCTACTGGCATCAGCGTTTGGGGA
CGGGGATATCAGCTCTGTAGAAGAATATGAGAGGCTTAAGAATAAGGTGG
AAACGGGGGTTCGTTGCAATGGGAACGACGAACATTTGCTACTGTGCGTT
ATTGCAGGCGCGTTTGTTCAGGGAAAGCTTCAAACGAGTCAGTTTCGTGG
TTTGCAGGCGTTTTTGCAGCGCAGGTCCAAAACGGTTTGGATACCTTTTA
AGCGCCGTGGCAGCCGTTCGGATTTGCTGCTGTCGGAGCGAAAGAGTGAT
GCTGTACACTCTCCTGACGACGTGGAGGTGAACACAGACAACCCGTCGAG
CGAGACAAGATCGGAAGACATTTAA

Coding sequence (CDS) from alignment at NODE_547_length_22469_cov_5.357315:12435..14159+

>Gcaud1218.t1 ID=Gcaud1218.t1|Name=Gcaud1218.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1725bp|location=Sequence derived from alignment at NODE_547_length_22469_cov_5.357315:12435..14159+ (Gracilaria caudata M_176_S67 male)
ATGATTGTGTTGGGAGTAGTTTCGTACCTTTTCCGCTCGCTCCGTCCGTT
ATGGCGAGTACTTGGCGGCGTTGGTCCTTTCTTCCTGGCATTGGACGCTG
ACGCTGGTGATCTCTACTTCGTCTATTACATCAAGACTGGTCTTGTATTA
CTAATGGATGCGCTCTTACTATATCAATTCTTCGACACAAATGGATTCGA
AGAAGACACTCCATCCTCCCACGCCATTTTCGCAGTTATCTCCATTCTCT
TCATTGCCTCTTGTGTCATTACTTTCGTCGGCCACAGACTGCGTGATCGC
ATCGTGGTGACTAGATCAACGCCGGCGTTCACCTGCAACGAACTTGTCCC
TGTTGATCCCTGTGTTTTTGGGACACCATACGCCGACTTCGAAGAAAAGA
CTATTCGTACACCTCTGAAGCCGGTCGATCTTCGTGACGCGTGGGAAGAC
GACGGCCACGGAGGTCGTCGTCCTCTCACACCGAAGGAAGTGCATACCGG
GGTGTTGCGCACATGCTTCATCACACAGTACGTCATGTCTCGCATTTACA
AGTCTCCAAAGAACCACATTTACGTCTTTTCGATGGTCGCATGGTACCGA
ACTCGAGTGTTTCTTCTGTTGGCGGCACTCACGGGACTGTGTGATGTGGG
CAATGACCTGTTCCGTACTGACGGTACTACCAAAGACGTGGCGTCCAAAG
CTATCTTGTGGCTCACGCTGCCGTCGATAACGATTCCAGCATTGCTCAAA
ATCCGCTTTGGAACGCACGCTAGACTCAATTTCTTGATGTGTGGACTTCT
TCCAGTTACGTGCGACCGCGAGATGTGGCTGCGAATTGGTGTAGGTCCAT
CTGATTTGTACTGTGCGCTGACCAACGCTGTGCCTGCTGAACGCGTGTTA
GATAGCACCATCGGGCTCATCAACGGCGCTGGCAAAAGCAACGTTAAAGT
GTGTTCACCGAAGCTTGCCCGTCGCGCGTCAATTGACTCTCTTTTGCGAG
TAAGCGATTACTACGTGCGCGTTTTCGATGGCAGGTTATTTCAAATGTTC
AGGCCAGATACATTGAAAGTAGTACGTGGGGAACGATACACGGTTCGCGA
CAGGAACAACGTCGGGGGATTCGATAAGGGGAGTGCAAGGCGATACTCTC
ACGCAGAATATGACGCCGAAAATCCAGAAGGAGATAGTGATTGGTGGGGC
GAATGGGAGACGTGGGGCGGTGTGCTGCAGGTTGCGAAGCAGTCTTGGGA
CGATGAAGACCGCAACTTTGATGCACTGACAGACAGAAGCGATTGTTCGG
CGCAAAAACCGAGACTGCAGCAGTCGTGTATATCGCGATGTGCCGGTGTT
GAAAAATACCGTGAGTTGTTACTGCGTCTACTGGCATCAGCGTTTGGGGA
CGGGGATATCAGCTCTGTAGAAGAATATGAGAGGCTTAAGAATAAGGTGG
AAACGGGGGTTCGTTGCAATGGGAACGACGAACATTTGCTACTGTGCGTT
ATTGCAGGCGCGTTTGTTCAGGGAAAGCTTCAAACGAGTCAGTTTCGTGG
TTTGCAGGCGTTTTTGCAGCGCAGGTCCAAAACGGTTTGGATACCTTTTA
AGCGCCGTGGCAGCCGTTCGGATTTGCTGCTGTCGGAGCGAAAGAGTGAT
GCTGTACACTCTCCTGACGACGTGGAGGTGAACACAGACAACCCGTCGAG
CGAGACAAGATCGGAAGACATTTAA