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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005707462.1 |
| PFAMs | Lipase_3 |
| Max annot lvl | 2759|Eukaryota |
| Evalue | 3.93e-39 |
| EggNOG OGs | KOG4569@1|root,KOG4569@2759|Eukaryota |
| Description | phospholipase A1 activity |
| COG category | G |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2028.t1.start1 | Gcaud2028.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_538_length_22627_cov_4.365637 11989..11991 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2028.t1.intron1 | Gcaud2028.t1.intron1 | Gracilaria caudata M_176_S67 male | intron | NODE_538_length_22627_cov_4.365637 14374..14474 + |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud2028.t1.stop1 | Gcaud2028.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_538_length_22627_cov_4.365637 14544..14546 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud2028.t1 ID=Gcaud2028.t1|Name=Gcaud2028.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=819bp MHVEDFKVSEPNATRGIALPESSLLLFAETIVVNSFLYFNYDLHRLRSLA MKETFGAECFVRTPLPLIRHNGPRNSQLTCTRCGHPPPSDSQSKYGETSK FLANSFKKLQSSSLPTLPDLSSFQRFFPDSKERAQQVMNQISELWELAKN PDTPLHTLSTITSINDLLFQVLEEALLFPDEAPLRIPTSPEFDPILGLQL AAYAFRAYLEPSEAAYREIVVSSLPKPPGEKMYNHLAFSDTSFIASSATG LFMIQLTGDIEDAYLTATVNDGVSLDLLKLKHITILRCIRNPHADSAKSR DILTLDLYNSKEDYASSTGPLQSASVDLQEIVDRALETGEVVHGNSQKLG FCSPTQESSRSKSFQFQWPSELGLTLPSFPFSKEKVEESKEEEEQERTAS VQVSFVPFSERNSVQVSDTSDTSPSELRDDSSSFEDVARRALEAFQTAFR RANKENMQEEQNLTGTDRRIRDIVREVLRSKLPEGAMPTPSDWNRFIAAA TSLYDSIEDNRIIASTSTLNEQLKETLFVESMSTDTQVWLYHDRERKNLV VSFRGTEQVKWKDFFTDAQTFLQRWVPGEDIDLTIKTGLTVGLETFVPSI LPKAQVTGSIPDDAIAVHYGFLRAYFSVQNVLLRYILSLTSNLEEEYSIY FTGHSLGGALAIVAAADFVARYEWDNVCCMSYGAPKVGNLNFARRFNELV PNSFRIVNDEDLVSRMPRSVSEGNPVSKYKHSGRTVLLNDQGDYWIEGMV SSPYPNGKSVFDVLHERCTNVSDLLEMEQRLWDNLLSGKSVQHHLECSYF SAMHQVVKRYIKETNTPT* back to topspliced messenger RNA >Gcaud2028.t1 ID=Gcaud2028.t1|Name=Gcaud2028.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2457bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:11989..14546+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCACGTCGAGGATTTCAAGGTCTCAGAGCCAAACGCTACACGCGGTAT CGCATTACCTGAGAGTAGTCTGTTGCTCTTTGCCGAAACCATAGTTGTAA ACTCGTTCTTGTACTTTAACTACGACTTGCATCGCCTTAGAAGTCTTGCC ATGAAGGAAACATTTGGAGCGGAATGTTTTGTCAGGACACCTCTGCCTCT CATTCGCCACAATGGCCCTCGCAACTCCCAACTAACATGCACACGTTGTG GCCACCCCCCGCCTAGTGACTCGCAAAGTAAATATGGGGAGACCTCAAAG TTTCTGGCCAACTCATTCAAGAAACTGCAGTCCTCTTCTCTTCCCACCTT ACCGGATTTATCGTCCTTCCAAAGGTTCTTTCCGGATTCAAAAGAAAGGG CGCAACAAGTAATGAACCAGATTAGTGAGCTCTGGGAACTAGCGAAAAAC CCTGACACTCCCCTGCACACTCTTTCAACGATCACTTCAATCAACGACTT GCTGTTTCAGGTTCTAGAGGAAGCTTTGCTGTTTCCAGATGAGGCCCCCT TACGCATTCCGACGAGCCCAGAATTCGATCCAATTCTCGGCCTTCAACTT GCTGCTTACGCCTTTCGAGCGTATTTAGAACCGTCTGAGGCTGCGTATCG TGAGATCGTGGTTTCCTCCCTCCCAAAACCACCGGGAGAAAAGATGTATA ATCACCTCGCGTTTAGTGATACTTCTTTCATAGCTTCTTCTGCGACTGGT TTGTTCATGATTCAACTAACGGGAGATATCGAAGATGCCTATTTGACGGC CACTGTTAATGACGGAGTTTCGTTGGACCTTCTGAAGCTGAAGCATATCA CGATTCTGCGATGTATACGCAATCCTCATGCCGACAGTGCGAAATCTCGT GATATACTAACTTTGGACCTCTACAACTCGAAGGAGGACTACGCATCATC GACAGGGCCATTACAATCCGCGAGCGTAGATCTCCAAGAGATCGTCGATC GAGCTTTAGAAACTGGAGAAGTAGTTCATGGAAACTCCCAGAAACTCGGA TTTTGTTCTCCTACTCAAGAGAGCAGTCGTTCGAAGAGCTTTCAGTTTCA ATGGCCTTCGGAACTTGGTTTGACGTTGCCTTCCTTTCCATTTTCAAAAG AAAAGGTTGAGGAGTCGAAGGAAGAAGAGGAGCAAGAGCGTACGGCTTCA GTTCAGGTTAGCTTTGTACCCTTTTCTGAGAGGAACTCCGTTCAAGTATC GGATACATCAGATACTTCACCATCGGAGTTACGAGATGACTCTTCGAGCT TTGAGGATGTAGCCCGGAGAGCACTAGAAGCATTTCAGACTGCTTTTCGA AGAGCAAACAAAGAAAATATGCAAGAAGAACAGAACTTGACAGGAACAGA CCGAAGGATTCGAGATATTGTAAGGGAAGTATTGCGTTCCAAACTCCCGG AAGGGGCAATGCCAACACCTTCTGATTGGAACCGATTCATTGCGGCGGCA ACATCTCTCTATGACAGTATAGAGGACAATCGTATCATTGCAAGTACGAG CACTCTTAATGAACAACTGAAAGAGACGTTATTCGTAGAATCCATGTCAA CAGATACTCAAGTTTGGTTATACCACGACAGGGAGAGAAAGAATCTTGTC GTGTCCTTCAGAGGAACTGAACAGGTCAAATGGAAAGACTTTTTCACTGA TGCACAAACGTTCTTGCAAAGATGGGTTCCAGGAGAAGACATTGACTTGA CAATCAAGACAGGTCTGACTGTCGGGCTCGAGACCTTTGTTCCTAGCATA CTTCCGAAAGCCCAGGTAACAGGCTCAATCCCTGACGATGCCATAGCAGT GCATTATGGGTTTCTGAGGGCATACTTCAGTGTGCAAAACGTTTTACTGC GTTACATTCTTTCACTGACTTCTAATCTTGAGGAAGAGTATTCTATTTAC TTCACTGGGCATTCTCTTGGAGGCGCTCTTGCAATTGTAGCCGCAGCAGA CTTTGTTGCTCGATATGAGTGGGACAACGTGTGTTGCATGTCTTATGGAG CACCAAAGGTTGGAAACCTCAATTTCGCTAGGCGGTTCAACGAACTTGTC CCGAACTCGTTCCGAATCGTGAATGACGAGGACCTTGTTTCTCGCATGCC GCGTTCCGTATCTGAAGGAAACCCCGTGAGCAAGTACAAACATTCAGGCA GAACGGTTCTGCTAAACGATCAAGGAGACTATTGGATAGAAGGGATGGTC AGCTCCCCTTACCCAAATGGCAAATCCGTGTTTGATGTTCTTCATGAACG ATGCACAAATGTTTCAGATTTGCTGGAAATGGAACAACGGCTTTGGGATA ACCTACTCTCAGGGAAATCTGTTCAGCACCATCTGGAGTGCTCTTATTTC TCGGCGATGCACCAGGTAGTTAAAAGGTACATAAAAGAGACCAACAcacc cacttag back to topprotein sequence of Gcaud2028.t1 >Gcaud2028.t1 ID=Gcaud2028.t1|Name=Gcaud2028.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=819bp
MHVEDFKVSEPNATRGIALPESSLLLFAETIVVNSFLYFNYDLHRLRSLA MKETFGAECFVRTPLPLIRHNGPRNSQLTCTRCGHPPPSDSQSKYGETSK FLANSFKKLQSSSLPTLPDLSSFQRFFPDSKERAQQVMNQISELWELAKN PDTPLHTLSTITSINDLLFQVLEEALLFPDEAPLRIPTSPEFDPILGLQL AAYAFRAYLEPSEAAYREIVVSSLPKPPGEKMYNHLAFSDTSFIASSATG LFMIQLTGDIEDAYLTATVNDGVSLDLLKLKHITILRCIRNPHADSAKSR DILTLDLYNSKEDYASSTGPLQSASVDLQEIVDRALETGEVVHGNSQKLG FCSPTQESSRSKSFQFQWPSELGLTLPSFPFSKEKVEESKEEEEQERTAS VQVSFVPFSERNSVQVSDTSDTSPSELRDDSSSFEDVARRALEAFQTAFR RANKENMQEEQNLTGTDRRIRDIVREVLRSKLPEGAMPTPSDWNRFIAAA TSLYDSIEDNRIIASTSTLNEQLKETLFVESMSTDTQVWLYHDRERKNLV VSFRGTEQVKWKDFFTDAQTFLQRWVPGEDIDLTIKTGLTVGLETFVPSI LPKAQVTGSIPDDAIAVHYGFLRAYFSVQNVLLRYILSLTSNLEEEYSIY FTGHSLGGALAIVAAADFVARYEWDNVCCMSYGAPKVGNLNFARRFNELV PNSFRIVNDEDLVSRMPRSVSEGNPVSKYKHSGRTVLLNDQGDYWIEGMV SSPYPNGKSVFDVLHERCTNVSDLLEMEQRLWDNLLSGKSVQHHLECSYF SAMHQVVKRYIKETNTPT* back to topmRNA from alignment at NODE_538_length_22627_cov_4.365637:11989..14546+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud2028.t1 ID=Gcaud2028.t1|Name=Gcaud2028.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2558bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:11989..14546+ (Gracilaria caudata M_176_S67 male) ATGCACGTCGAGGATTTCAAGGTCTCAGAGCCAAACGCTACACGCGGTAT
CGCATTACCTGAGAGTAGTCTGTTGCTCTTTGCCGAAACCATAGTTGTAA
ACTCGTTCTTGTACTTTAACTACGACTTGCATCGCCTTAGAAGTCTTGCC
ATGAAGGAAACATTTGGAGCGGAATGTTTTGTCAGGACACCTCTGCCTCT
CATTCGCCACAATGGCCCTCGCAACTCCCAACTAACATGCACACGTTGTG
GCCACCCCCCGCCTAGTGACTCGCAAAGTAAATATGGGGAGACCTCAAAG
TTTCTGGCCAACTCATTCAAGAAACTGCAGTCCTCTTCTCTTCCCACCTT
ACCGGATTTATCGTCCTTCCAAAGGTTCTTTCCGGATTCAAAAGAAAGGG
CGCAACAAGTAATGAACCAGATTAGTGAGCTCTGGGAACTAGCGAAAAAC
CCTGACACTCCCCTGCACACTCTTTCAACGATCACTTCAATCAACGACTT
GCTGTTTCAGGTTCTAGAGGAAGCTTTGCTGTTTCCAGATGAGGCCCCCT
TACGCATTCCGACGAGCCCAGAATTCGATCCAATTCTCGGCCTTCAACTT
GCTGCTTACGCCTTTCGAGCGTATTTAGAACCGTCTGAGGCTGCGTATCG
TGAGATCGTGGTTTCCTCCCTCCCAAAACCACCGGGAGAAAAGATGTATA
ATCACCTCGCGTTTAGTGATACTTCTTTCATAGCTTCTTCTGCGACTGGT
TTGTTCATGATTCAACTAACGGGAGATATCGAAGATGCCTATTTGACGGC
CACTGTTAATGACGGAGTTTCGTTGGACCTTCTGAAGCTGAAGCATATCA
CGATTCTGCGATGTATACGCAATCCTCATGCCGACAGTGCGAAATCTCGT
GATATACTAACTTTGGACCTCTACAACTCGAAGGAGGACTACGCATCATC
GACAGGGCCATTACAATCCGCGAGCGTAGATCTCCAAGAGATCGTCGATC
GAGCTTTAGAAACTGGAGAAGTAGTTCATGGAAACTCCCAGAAACTCGGA
TTTTGTTCTCCTACTCAAGAGAGCAGTCGTTCGAAGAGCTTTCAGTTTCA
ATGGCCTTCGGAACTTGGTTTGACGTTGCCTTCCTTTCCATTTTCAAAAG
AAAAGGTTGAGGAGTCGAAGGAAGAAGAGGAGCAAGAGCGTACGGCTTCA
GTTCAGGTTAGCTTTGTACCCTTTTCTGAGAGGAACTCCGTTCAAGTATC
GGATACATCAGATACTTCACCATCGGAGTTACGAGATGACTCTTCGAGCT
TTGAGGATGTAGCCCGGAGAGCACTAGAAGCATTTCAGACTGCTTTTCGA
AGAGCAAACAAAGAAAATATGCAAGAAGAACAGAACTTGACAGGAACAGA
CCGAAGGATTCGAGATATTGTAAGGGAAGTATTGCGTTCCAAACTCCCGG
AAGGGGCAATGCCAACACCTTCTGATTGGAACCGATTCATTGCGGCGGCA
ACATCTCTCTATGACAGTATAGAGGACAATCGTATCATTGCAAGTACGAG
CACTCTTAATGAACAACTGAAAGAGACGTTATTCGTAGAATCCATGTCAA
CAGATACTCAAGTTTGGTTATACCACGACAGGGAGAGAAAGAATCTTGTC
GTGTCCTTCAGAGGAACTGAACAGGTCAAATGGAAAGACTTTTTCACTGA
TGCACAAACGTTCTTGCAAAGATGGGTTCCAGGAGAAGACATTGACTTGA
CAATCAAGACAGGTCTGACTGTCGGGCTCGAGACCTTTGTTCCTAGCATA
CTTCCGAAAGCCCAGGTAACAGGCTCAATCCCTGACGATGCCATAGCAGT
GCATTATGGGTTTCTGAGGGCATACTTCAGTGTGCAAAACGTTTTACTGC
GTTACATTCTTTCACTGACTTCTAATCTTGAGGAAGAGTATTCTATTTAC
TTCACTGGGCATTCTCTTGGAGGCGCTCTTGCAATTGTAGCCGCAGCAGA
CTTTGTTGCTCGATATGAGTGGGACAACGTGTGTTGCATGTCTTATGGAG
CACCAAAGGTTGGAAACCTCAATTTCGCTAGGCGGTTCAACGAACTTGTC
CCGAACTCGTTCCGAATCGTGAATGACGAGGACCTTGTTTCTCGCATGCC
GCGTTCCGTATCTGAAGGAAACCCCGTGAGCAAGTACAAACATTCAGGCA
GAACGGTTCTGCTAAACGATCAAGGAGACTATTGGATAGAAGGGATGGTC
AGCTCCCCTTACCCAAATGGCAAATCCGTGTTTGATGTTCTTCATGAACG
ATGCACAAATGTTTCAGATTTGCTGGAAATGGAACAACGGCTTTGGGATA
ACCTACTCTCAGGGAAATCTGTTCAGCACCATCTGGTACGTTCACTGTAG
TTCAGCGGATGTCTTCTACCGTTCATGCGTTGCCCATTGATCGCTAACCT
CTTTATGATTTTCGGTACTCCATTTGAGTTTCACAGGAGTGCTCTTATTT
CTCGGCGATGCACCAGGTAGTTAAAAGGTACATAAAAGAGACCAACAcac
ccacttag back to topCoding sequence (CDS) from alignment at NODE_538_length_22627_cov_4.365637:11989..14546+ >Gcaud2028.t1 ID=Gcaud2028.t1|Name=Gcaud2028.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2457bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:11989..14546+ (Gracilaria caudata M_176_S67 male) ATGCACGTCGAGGATTTCAAGGTCTCAGAGCCAAACGCTACACGCGGTAT CGCATTACCTGAGAGTAGTCTGTTGCTCTTTGCCGAAACCATAGTTGTAA ACTCGTTCTTGTACTTTAACTACGACTTGCATCGCCTTAGAAGTCTTGCC ATGAAGGAAACATTTGGAGCGGAATGTTTTGTCAGGACACCTCTGCCTCT CATTCGCCACAATGGCCCTCGCAACTCCCAACTAACATGCACACGTTGTG GCCACCCCCCGCCTAGTGACTCGCAAAGTAAATATGGGGAGACCTCAAAG TTTCTGGCCAACTCATTCAAGAAACTGCAGTCCTCTTCTCTTCCCACCTT ACCGGATTTATCGTCCTTCCAAAGGTTCTTTCCGGATTCAAAAGAAAGGG CGCAACAAGTAATGAACCAGATTAGTGAGCTCTGGGAACTAGCGAAAAAC CCTGACACTCCCCTGCACACTCTTTCAACGATCACTTCAATCAACGACTT GCTGTTTCAGGTTCTAGAGGAAGCTTTGCTGTTTCCAGATGAGGCCCCCT TACGCATTCCGACGAGCCCAGAATTCGATCCAATTCTCGGCCTTCAACTT GCTGCTTACGCCTTTCGAGCGTATTTAGAACCGTCTGAGGCTGCGTATCG TGAGATCGTGGTTTCCTCCCTCCCAAAACCACCGGGAGAAAAGATGTATA ATCACCTCGCGTTTAGTGATACTTCTTTCATAGCTTCTTCTGCGACTGGT TTGTTCATGATTCAACTAACGGGAGATATCGAAGATGCCTATTTGACGGC CACTGTTAATGACGGAGTTTCGTTGGACCTTCTGAAGCTGAAGCATATCA CGATTCTGCGATGTATACGCAATCCTCATGCCGACAGTGCGAAATCTCGT GATATACTAACTTTGGACCTCTACAACTCGAAGGAGGACTACGCATCATC GACAGGGCCATTACAATCCGCGAGCGTAGATCTCCAAGAGATCGTCGATC GAGCTTTAGAAACTGGAGAAGTAGTTCATGGAAACTCCCAGAAACTCGGA TTTTGTTCTCCTACTCAAGAGAGCAGTCGTTCGAAGAGCTTTCAGTTTCA ATGGCCTTCGGAACTTGGTTTGACGTTGCCTTCCTTTCCATTTTCAAAAG AAAAGGTTGAGGAGTCGAAGGAAGAAGAGGAGCAAGAGCGTACGGCTTCA GTTCAGGTTAGCTTTGTACCCTTTTCTGAGAGGAACTCCGTTCAAGTATC GGATACATCAGATACTTCACCATCGGAGTTACGAGATGACTCTTCGAGCT TTGAGGATGTAGCCCGGAGAGCACTAGAAGCATTTCAGACTGCTTTTCGA AGAGCAAACAAAGAAAATATGCAAGAAGAACAGAACTTGACAGGAACAGA CCGAAGGATTCGAGATATTGTAAGGGAAGTATTGCGTTCCAAACTCCCGG AAGGGGCAATGCCAACACCTTCTGATTGGAACCGATTCATTGCGGCGGCA ACATCTCTCTATGACAGTATAGAGGACAATCGTATCATTGCAAGTACGAG CACTCTTAATGAACAACTGAAAGAGACGTTATTCGTAGAATCCATGTCAA CAGATACTCAAGTTTGGTTATACCACGACAGGGAGAGAAAGAATCTTGTC GTGTCCTTCAGAGGAACTGAACAGGTCAAATGGAAAGACTTTTTCACTGA TGCACAAACGTTCTTGCAAAGATGGGTTCCAGGAGAAGACATTGACTTGA CAATCAAGACAGGTCTGACTGTCGGGCTCGAGACCTTTGTTCCTAGCATA CTTCCGAAAGCCCAGGTAACAGGCTCAATCCCTGACGATGCCATAGCAGT GCATTATGGGTTTCTGAGGGCATACTTCAGTGTGCAAAACGTTTTACTGC GTTACATTCTTTCACTGACTTCTAATCTTGAGGAAGAGTATTCTATTTAC TTCACTGGGCATTCTCTTGGAGGCGCTCTTGCAATTGTAGCCGCAGCAGA CTTTGTTGCTCGATATGAGTGGGACAACGTGTGTTGCATGTCTTATGGAG CACCAAAGGTTGGAAACCTCAATTTCGCTAGGCGGTTCAACGAACTTGTC CCGAACTCGTTCCGAATCGTGAATGACGAGGACCTTGTTTCTCGCATGCC GCGTTCCGTATCTGAAGGAAACCCCGTGAGCAAGTACAAACATTCAGGCA GAACGGTTCTGCTAAACGATCAAGGAGACTATTGGATAGAAGGGATGGTC AGCTCCCCTTACCCAAATGGCAAATCCGTGTTTGATGTTCTTCATGAACG ATGCACAAATGTTTCAGATTTGCTGGAAATGGAACAACGGCTTTGGGATA ACCTACTCTCAGGGAAATCTGTTCAGCACCATCTGGAGTGCTCTTATTTC TCGGCGATGCACCAGGTAGTTAAAAGGTACATAAAAGAGACCAACAcacc cacttag back to top
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