Gcaud2024.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2024.t1
Unique NameGcaud2024.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length324
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_538_length_22627_cov_4.365637contigNODE_538_length_22627_cov_4.365637:2642..3613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003289763.1
PFAMsMito_carr
Max annot lvl554915|Amoebozoa
KEGG koko:K15105
KEGG TC2.A.29.14.1,2.A.29.14.2,2.A.29.14.4
GOsGO:0003333,GO:0003674,GO:0005215,GO:0005283,GO:0005310,GO:0005313,GO:0005314,GO:0005326,GO:0005328,GO:0005342,GO:0005343,GO:0005416,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006820,GO:0006835,GO:0006836,GO:0006839,GO:0006855,GO:0006865,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015077,GO:0015081,GO:0015171,GO:0015172,GO:0015179,GO:0015238,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015370,GO:0015501,GO:0015672,GO:0015711,GO:0015800,GO:0015807,GO:0015813,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0017153,GO:0019866,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0035725,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0098655,GO:0098656,GO:0098660,GO:0098662,GO:1902475,GO:1903825,GO:1905039
Evalue2.57e-61
EggNOG OGsKOG0751@1|root,KOG0751@2759|Eukaryota,3XATR@554915|Amoebozoa
DescriptionMitochondrial carrier protein
COG categoryC
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2024Gcaud2024Gracilaria caudata M_176_S67 malegeneNODE_538_length_22627_cov_4.365637 2642..3613 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2024.t1.stop1Gcaud2024.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_538_length_22627_cov_4.365637 2642..2644 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2024.t1.CDS1Gcaud2024.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_538_length_22627_cov_4.365637 2642..3613 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2024.t1.exon1Gcaud2024.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_538_length_22627_cov_4.365637 2642..3613 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2024.t1.start1Gcaud2024.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_538_length_22627_cov_4.365637 3611..3613 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2024.t1Gcaud2024.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_538_length_22627_cov_4.365637 2642..3613 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2024.t1 ID=Gcaud2024.t1|Name=Gcaud2024.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=324bp
MTKPSPQSSAAAHSGNKNLLQNILFGGVAGVIGQGSVYPLYTIRTHLQVS
PTKYTNFVQTGFKIARETGFRSLYRGLAPALVGVFPEKAIKLSVNDYLTA
VLSRPDGSISIPHAMIAGAGAGLTQVIATNPMEVMMINMQTSTLTMGRLI
SKLGISGLYKGVSATLLRDIPFSIVFFPMNTYLRLMFTDRDGTLPTPKVF
LAGILSGSTAAITSTPADVIKTNLQSINKKELPVSPAAPASPSAAQTIRP
AAPTPQSSRSMSSTAKPAAHFGIVQCAKSIYATRGIRGFFAGVGPRILTV
SPLFGVTMFMYEVQRRLKESGTL*
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spliced messenger RNA

>Gcaud2024.t1 ID=Gcaud2024.t1|Name=Gcaud2024.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=972bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:2642..3613- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCAAGCCCTCCCCGCAGTCGTCCGCCGCCGCCCACTCCGGCAACAA
GAACCTGCTGCAGAACATCCTGTTCGGCGGCGTCGCCGGCGTGATTGGCC
AGGGCTCCGTGTATCCGCTATACACCATCCGCACTCACCTGCAGGTGAGC
CCGACTAAGTACACCAACTTCGTGCAGACCGGCTTCAAGATAGCGCGTGA
AACCGGCTTTAGATCGCTCTACCGTGGTCTTGCCCCGGCTCTCGTGGGCG
TATTTCCCGAGAAGGCAATAAAGCTCTCTGTTAATGACTACCTTACCGCC
GTCTTGTCGCGCCCCGACGGATCCATATCCATACCCCACGCCATGATCGC
CGGCGCTGGCGCCGGTTTGACTCAGGTCATCGCCACTAACCCCATGGAAG
TGATGATGATCAATATGCAAACTTCAACGCTGACAATGGGGCGTCTCATC
TCGAAGCTTGGTATAAGCGGCCTCTACAAGGGCGTCTCGGCCACCTTGCT
ACGTGACATCCCCTTCAGCATCGTGTTCTTCCCCATGAACACCTACCTAC
GCCTCATGTTCACTGATCGCGATGGCACCTTGCCAACACCCAAGGTCTTC
CTGGCAGGAATTCTATCCGGATCCACCGCCGCTATTACGTCTACACCGGC
CGATGTCATTAAGACCAACCTGCAGTCCATCAATAAAAAGGAGTTGCCCG
TATCTCCCGCCGCACCCGCATCACCGTCCGCCGCGCAGACCATCCGCCCG
GCAGCTCCCACTCCGCAGTCCTCGCGATCTATGTCATCCACCGCAAAACC
CGCCGCCCACTTCGGAATTGTCCAGTGTGCCAAGTCCATCTACGCCACAC
GCGGCATTCGCGGCTTCTTTGCAGGTGTCGGTCCGCGTATACTCACTGTG
TCCCCATTGTTCGGGGTCACCATGTTCATGTACGAGGTCCAGCGTCGTCT
TAAGGAATCCGGAACACTCTGA
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protein sequence of Gcaud2024.t1

>Gcaud2024.t1 ID=Gcaud2024.t1|Name=Gcaud2024.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=324bp
MTKPSPQSSAAAHSGNKNLLQNILFGGVAGVIGQGSVYPLYTIRTHLQVS
PTKYTNFVQTGFKIARETGFRSLYRGLAPALVGVFPEKAIKLSVNDYLTA
VLSRPDGSISIPHAMIAGAGAGLTQVIATNPMEVMMINMQTSTLTMGRLI
SKLGISGLYKGVSATLLRDIPFSIVFFPMNTYLRLMFTDRDGTLPTPKVF
LAGILSGSTAAITSTPADVIKTNLQSINKKELPVSPAAPASPSAAQTIRP
AAPTPQSSRSMSSTAKPAAHFGIVQCAKSIYATRGIRGFFAGVGPRILTV
SPLFGVTMFMYEVQRRLKESGTL*
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mRNA from alignment at NODE_538_length_22627_cov_4.365637:2642..3613-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2024.t1 ID=Gcaud2024.t1|Name=Gcaud2024.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=972bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:2642..3613- (Gracilaria caudata M_176_S67 male)
ATGACCAAGCCCTCCCCGCAGTCGTCCGCCGCCGCCCACTCCGGCAACAA
GAACCTGCTGCAGAACATCCTGTTCGGCGGCGTCGCCGGCGTGATTGGCC
AGGGCTCCGTGTATCCGCTATACACCATCCGCACTCACCTGCAGGTGAGC
CCGACTAAGTACACCAACTTCGTGCAGACCGGCTTCAAGATAGCGCGTGA
AACCGGCTTTAGATCGCTCTACCGTGGTCTTGCCCCGGCTCTCGTGGGCG
TATTTCCCGAGAAGGCAATAAAGCTCTCTGTTAATGACTACCTTACCGCC
GTCTTGTCGCGCCCCGACGGATCCATATCCATACCCCACGCCATGATCGC
CGGCGCTGGCGCCGGTTTGACTCAGGTCATCGCCACTAACCCCATGGAAG
TGATGATGATCAATATGCAAACTTCAACGCTGACAATGGGGCGTCTCATC
TCGAAGCTTGGTATAAGCGGCCTCTACAAGGGCGTCTCGGCCACCTTGCT
ACGTGACATCCCCTTCAGCATCGTGTTCTTCCCCATGAACACCTACCTAC
GCCTCATGTTCACTGATCGCGATGGCACCTTGCCAACACCCAAGGTCTTC
CTGGCAGGAATTCTATCCGGATCCACCGCCGCTATTACGTCTACACCGGC
CGATGTCATTAAGACCAACCTGCAGTCCATCAATAAAAAGGAGTTGCCCG
TATCTCCCGCCGCACCCGCATCACCGTCCGCCGCGCAGACCATCCGCCCG
GCAGCTCCCACTCCGCAGTCCTCGCGATCTATGTCATCCACCGCAAAACC
CGCCGCCCACTTCGGAATTGTCCAGTGTGCCAAGTCCATCTACGCCACAC
GCGGCATTCGCGGCTTCTTTGCAGGTGTCGGTCCGCGTATACTCACTGTG
TCCCCATTGTTCGGGGTCACCATGTTCATGTACGAGGTCCAGCGTCGTCT
TAAGGAATCCGGAACACTCTGA
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Coding sequence (CDS) from alignment at NODE_538_length_22627_cov_4.365637:2642..3613-

>Gcaud2024.t1 ID=Gcaud2024.t1|Name=Gcaud2024.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=972bp|location=Sequence derived from alignment at NODE_538_length_22627_cov_4.365637:2642..3613- (Gracilaria caudata M_176_S67 male)
ATGACCAAGCCCTCCCCGCAGTCGTCCGCCGCCGCCCACTCCGGCAACAA
GAACCTGCTGCAGAACATCCTGTTCGGCGGCGTCGCCGGCGTGATTGGCC
AGGGCTCCGTGTATCCGCTATACACCATCCGCACTCACCTGCAGGTGAGC
CCGACTAAGTACACCAACTTCGTGCAGACCGGCTTCAAGATAGCGCGTGA
AACCGGCTTTAGATCGCTCTACCGTGGTCTTGCCCCGGCTCTCGTGGGCG
TATTTCCCGAGAAGGCAATAAAGCTCTCTGTTAATGACTACCTTACCGCC
GTCTTGTCGCGCCCCGACGGATCCATATCCATACCCCACGCCATGATCGC
CGGCGCTGGCGCCGGTTTGACTCAGGTCATCGCCACTAACCCCATGGAAG
TGATGATGATCAATATGCAAACTTCAACGCTGACAATGGGGCGTCTCATC
TCGAAGCTTGGTATAAGCGGCCTCTACAAGGGCGTCTCGGCCACCTTGCT
ACGTGACATCCCCTTCAGCATCGTGTTCTTCCCCATGAACACCTACCTAC
GCCTCATGTTCACTGATCGCGATGGCACCTTGCCAACACCCAAGGTCTTC
CTGGCAGGAATTCTATCCGGATCCACCGCCGCTATTACGTCTACACCGGC
CGATGTCATTAAGACCAACCTGCAGTCCATCAATAAAAAGGAGTTGCCCG
TATCTCCCGCCGCACCCGCATCACCGTCCGCCGCGCAGACCATCCGCCCG
GCAGCTCCCACTCCGCAGTCCTCGCGATCTATGTCATCCACCGCAAAACC
CGCCGCCCACTTCGGAATTGTCCAGTGTGCCAAGTCCATCTACGCCACAC
GCGGCATTCGCGGCTTCTTTGCAGGTGTCGGTCCGCGTATACTCACTGTG
TCCCCATTGTTCGGGGTCACCATGTTCATGTACGAGGTCCAGCGTCGTCT
TAAGGAATCCGGAACACTCTGA
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