Gcaud7484.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7484.t1
Unique NameGcaud7484.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length324
Homology
BLAST of Gcaud7484.t1 vs. uniprot
Match: UPI001E1D3E38 (uncharacterized protein LOC123544752 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D3E38)

HSP 1 Score: 198 bits (503), Expect = 4.440e-55
Identity = 113/249 (45.38%), Postives = 146/249 (58.63%), Query Frame = 0
Query:   80 AVANGIAHIEPDKPYNVLVPNLGSTTQCLVKNQVTGSVMPHPTAIIST----RMTATDVLGLVHSKEGKDAAKSSLTSSISLGDTSAVAEKQ-RGPTSYNQIDPVKEVEELDLGLLPESHREKLCVMLRELTTMWDGSLEEIKKTEHRIDLLPNTRPVVQHPYRAGPKASEEEQFQVDKMLRAGVIEPAQSPWVYPVVLAPKPDGSWCFCIDYRRLNAVTVKDVYPIPRMEEYIDSLGNANMFTALDAN 323
            +++NGI  I    P+ V V N G     L KN V G   PHPT IIS          D+  LV  +E            +   D S   + Q   P S+         +E+DL  L    +EK+  +L   + MWDGSL EIK T+HRI L+P ++PV  HPYRAGPKA E E+ +V++ML+A VIEPA S W  PVVL PKPDGS  FC+DYR+LN++TVKD YP+PRM+E IDSLG+A +F+ LD N
Sbjct:  223 SMSNGIQDICSRVPFLVKVANFGGDEIFLPKNAVIGYAFPHPTCIISLVGEDDTNVPDLPDLVEEEEHP----------LEANDASEETKVQDEAPKSWR--------DEVDLPTLQGEWKEKVMTLLERYSHMWDGSLGEIKATKHRIQLIPGSKPVHSHPYRAGPKAREMERQEVERMLKADVIEPACSEWASPVVLVPKPDGSLRFCVDYRKLNSITVKDTYPLPRMDESIDSLGDAAIFSTLDCN 453          
BLAST of Gcaud7484.t1 vs. uniprot
Match: R7QIA9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIA9_CHOCR)

HSP 1 Score: 187 bits (475), Expect = 7.260e-52
Identity = 92/234 (39.32%), Postives = 141/234 (60.26%), Query Frame = 0
Query:   73 VYDGYHLAVANGIAHIEPDKPYNVLVPNLGSTTQCLVKNQVTGSVMPHPTAIISTRMTATDVLGLVHSKEGKDAAKSSLTSSISLGDTSAVAEKQRGPTSYNQIDPVKEVEELDLGLLPESHREKLCVMLRELTTMWDGSLEEIKKTEHRIDLLPNTRPVVQHPYRAGPKASEEEQFQVDKMLRAGVIEPAQSPWVYPVVLAPKPDGSWCFCIDYRRLNAVTVKDVYPIPRMEE 306
            +Y    +  +NG+  +EP++ + VLV N G     LVK Q  G+++PHPTA+I ++++   +L L   +  +        ++ ++ +TS  +                  +++D+  +P  HR+++  ML + ++MW G L EIK T+H ID +  TRP+ Q+PYRAGP A E E  +VD MLRAGV+EP++S W  PV L PK DG   FC+DYRRLNAVT++D YP+PRM+E
Sbjct:    9 LYTKSQVVASNGVVQVEPNREFRVLVANFGIAPYRLVKGQTIGTLLPHPTAVIVSKVSVAAMLDLTDEEANEVQQDFDKDANWAVENTSMTSNP----------------DDVDISHVPARHRDQIKAMLLKYSSMWSGELGEIKVTKHHIDTMTGTRPIAQNPYRAGPHAREAEMKEVDCMLRAGVLEPSKSAWASPVALLPKKDGQLRFCVDYRRLNAVTIRDSYPLPRMDE 226          
BLAST of Gcaud7484.t1 vs. uniprot
Match: UPI001E1DB02D (uncharacterized protein LOC123543982 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DB02D)

HSP 1 Score: 181 bits (460), Expect = 3.390e-49
Identity = 105/262 (40.08%), Postives = 143/262 (54.58%), Query Frame = 0
Query:   76 GYHLAVANGIAHIEPDKPYNVLVPNLGSTTQCLVKNQVTGSVMPHPTAI--ISTRMTATDVLGLVHSKEGKDAAKSSLTSSISLGDTSAVAEKQRGPTSYN------------QIDPVKEVEELDLGLLPESHREKLCVMLRELTTMWDGSLEEIKKTEHRIDLLPNTRPVVQHPYRAGPKASEEEQFQVDKMLRAGVIEPAQSPWVYPVVLAPKPDGSWCFCIDYRRLNAVTVKDVYPIPRMEEYIDSLGNANMFTALDAN 323
            G H+A  NG+A I P++P+ V V N    T+ L K  V G  +PHPTAI  +  R    +       +       +    + ++GD      K   P  Y              ++     E + LG L    R K+  ML +  +MW G L +++ T HRIDL+P  +PV   PYRAGP+A   E  ++ +ML+A VIEPA S W  P+VL  KPDGS  FC+DYRRLNA+TV+D YP+PRM+E IDSLG+A +FT LD N
Sbjct:  212 GVHMA--NGVAEIWPNQPFTVRVVNTSMKTRRLPKGMVLGHALPHPTAIGGLDRRHRCCE-------RTSDSEPFACCRRNFTVGDQEKEG-KNLPPMEYGLERDPPPLPDRPDVEGDTWQEAVQLGHLQGEERAKILDMLAKHRSMWSGKLGQVQSTNHRIDLIPGQKPVHCQPYRAGPRARAVESAEIQRMLKAQVIEPATSEWASPIVLVAKPDGSTRFCVDYRRLNAITVRDSYPLPRMDECIDSLGDAKIFTTLDCN 463          
BLAST of Gcaud7484.t1 vs. uniprot
Match: UPI001E1DEA69 (uncharacterized protein LOC123544193 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DEA69)

HSP 1 Score: 154 bits (389), Expect = 3.480e-39
Identity = 91/245 (37.14%), Postives = 132/245 (53.88%), Query Frame = 0
Query:   79 LAVANGIAHIEPDKPYNVLVPNLGSTTQCLVKNQVTGSVMPHPTAIISTRMTATDVLGLVHSKEGKDAAKSSLTSSISLGDTSAVAEKQRGPTSYNQIDPVKEVEELDLGLLPESHREKLCVMLRELTTMWDGSLEEIKKTEHRIDLLPNTRPVVQHPYRAGPKASEEEQFQVDKMLRAGVIEPAQSPWVYPVVLAPKPDGSWCFCIDYRRLNAVTVKDVYPIPRMEEYIDSLGNANMFTALDAN 323
            +++A+G+A +  + P+ V + N    +  L K  V GS    P  II+       ++    ++  KD             D ++  E+   P   +  D V+ ++ L+L       R+ +  ML     MWDG L  +  T HRI++    +PV   PYRAG +A   E+ ++D+ML   VIEPA   W  P+VL PKPDGS  FC+DYRRLNA+TV D YP+PRM+E IDSLG+A +FT LD N
Sbjct:  242 VSLASGVADVRSNVPFRVRLLNPSDRSITLSKGMVVGSATLRPQRIITVDPGVETLI----TQADKDC------------DPTSSMEQTEPPPPTSWKDDVR-LDHLEL-----EERQAVLRMLEPHHKMWDGHLGTVAATSHRIEVTAGAKPVHCQPYRAGSRARSAEKEEIDRMLAEHVIEPATCEWASPIVLVPKPDGSLRFCVDYRRLNAITVPDTYPLPRMDECIDSLGDAVVFTTLDCN 464          
BLAST of Gcaud7484.t1 vs. uniprot
Match: R7QMC5_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMC5_CHOCR)

HSP 1 Score: 145 bits (366), Expect = 3.800e-35
Identity = 68/132 (51.52%), Postives = 90/132 (68.18%), Query Frame = 0
Query:  183 EELDLGLLPESHREKLCVMLRELTTMWDGSLEEIKKTEHRIDLLPNTRPVVQHPYRAGPKASEEEQFQVDKMLRAGVIEPAQSPWVYPVVLAPKPDGSWCFCIDYRRLNAVTVKDVYPIPRMEEYIDSLGNA 314
            E++ +G    + R ++  ML E   MW G L +I  T+H I+L P  +P+ Q PYRAGP A E+E+ ++D MLRAGVIEP  + W  PV   PK DG+  FC+DYR+LNAVTV+D YP PRM+E IDSLG+A
Sbjct:  126 EDVHIGAEDSTVRSEIMDMLSEFKDMWSGHLGKIDATKHHIELKPGGKPIYQAPYRAGPIAREKEKKEIDGMLRAGVIEPTSAEWASPVAFVPKKDGTMPFCVDYRKLNAVTVRDSYPQPRMDECIDSLGDA 257          
BLAST of Gcaud7484.t1 vs. uniprot
Match: UPI001E1D9CF0 (uncharacterized protein LOC123544487 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D9CF0)

HSP 1 Score: 139 bits (350), Expect = 1.270e-34
Identity = 91/246 (36.99%), Postives = 125/246 (50.81%), Query Frame = 0
Query:   83 NGIAHIEP-DKPYNVLVPNLGSTTQCLVKNQVTGSVMPHPTAIISTRMTATDVLGLVHSKEGKDAAKSSLTSSISLGDTSAVAEKQRGPTSYNQIDPVK---EVEELDLGLLPESHREKLCVMLRELTTMWDGSLEEIKKTEHRIDLLPNTRP-VVQHPYRAGPKASEEEQFQVDKMLRAGVIEPAQSPWVYPVVLAPKPDGSWCFCIDYRRLNAVTVKDVYPIPRMEEYIDSLGNANMFTALDAN 323
            NG+  + P  K +  LV N    T  + K QV G    +  A+    + A  +     +++G+              D  AV  +   P   N  D  K   EV       LP++ +++L  ML     MWDG L +I    HR+   P T P V   PYRAGP + +    ++ +ML++ VIEP  SPW  P+VL PKPDGS  FC+DYRRLNAVT  D Y +PR+++ +DSLG A  FT LDAN
Sbjct:  115 NGVHDLPPCGKMFRCLVANFSHHTVVVRKGQVVG----YAEAVQEIPVCAVPI----SAQDGEP-------------DLMAVTREDVDPLPANVPDLPKHWKEVVRSSSTHLPDAQKDELIQMLETHQEMWDGRLGKIDTVSHRV---PTTGPPVASQPYRAGPSSRKLIDEEIQRMLKSEVIEPTSSPWSAPIVLIPKPDGSIRFCVDYRRLNAVTENDSYALPRIDDCLDSLGEAQFFTTLDAN 336          
BLAST of Gcaud7484.t1 vs. uniprot
Match: R7QHJ7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHJ7_CHOCR)

HSP 1 Score: 127 bits (320), Expect = 8.200e-32
Identity = 59/107 (55.14%), Postives = 78/107 (72.90%), Query Frame = 0
Query:  208 MWDGSLEEIKKTEHRIDLLPNTRPVVQHPYRAGPKASEEEQFQVDKMLRAGVIEPAQSPWVYPVVLAPKPDGSWCFCIDYRRLNAVTVKDVYPIPRMEEYIDSLGNA 314
            MW G L +I  T+HRI+L P  R + + PY AGP A E+E+ ++D+MLRAGVIEPA + W  PVV   K +G+  FC+DYR LNAVTV+D YP+ RM+E I+SLG+A
Sbjct:    1 MWTGQLGKIGATKHRIELEPGARQIYKAPYPAGPTAREKEKTEIDRMLRAGVIEPATAEWASPVVFVRKKEGTMRFCVDYRTLNAVTVRDSYPLLRMDECINSLGDA 107          
BLAST of Gcaud7484.t1 vs. uniprot
Match: R7QJR5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJR5_CHOCR)

HSP 1 Score: 126 bits (317), Expect = 1.060e-31
Identity = 69/145 (47.59%), Postives = 88/145 (60.69%), Query Frame = 0
Query:  178 PVKEVEELDLGLLPESHREKLCVMLRELTTMWDGSLEEIKKTEHRIDLLPNTRPVVQHPYRAGPKASEEEQFQVDKMLRAGVIEPAQSPWVYPVVLAPKPDGSWCFCIDYRRLNAVTVKDVYPIPRMEEYIDSLGNANMFTALDA 322
            P  +VEELDL  +P+  RE+   M ++ + +WDG+L EI  T HRI+L+P TRP+ + PYRAGPK  E E  +V KML AGVIEPAQ                         L AVTVKD YP+PRM+E  DSLG+  +F+ALDA
Sbjct:   33 PPPDVEELDLSHVPDRLRERFRRMSKKYSRVWDGTLGEIYTTVHRIELIPETRPIAKAPYRAGPKVCEIEDAEVQKMLEAGVIEPAQ-------------------------LKAVTVKDTYPLPRMDECRDSLGDTKVFSALDA 152          
BLAST of Gcaud7484.t1 vs. uniprot
Match: UPI001E1D2C1D (uncharacterized protein LOC123544039 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D2C1D)

HSP 1 Score: 135 bits (339), Expect = 1.630e-31
Identity = 72/173 (41.62%), Postives = 96/173 (55.49%), Query Frame = 0
Query:  155 ISLGDTSAVAEKQRGPTSYNQIDPVKEVEEL---DLGLLPESHREKLCVMLRELTTMWDGSLEEIKKTEHRIDLLPNTRP-VVQHPYRAGPKASEEEQFQVDKMLRAGVIEPAQSPWVYPVVLAPKPDGSWCFCIDYRRLNAVTVKDVYPIPRMEEYIDSLGNANMFTALDAN 323
            + + +   V+     PT  +  D   E E +       L E+  EKL   LR   ++WDG L  I   +H I   P T P +   PYR GP + +    ++ +M    VIEPA+ PW  PVVL PKPDGS  FC+DYRRLNAVT KD Y +PR+++ +DSLG A  F+ LDAN
Sbjct:  529 VGVAEAQVVSHVFTVPTEASNSDTSDEWENIVRSQTSHLSENESEKLLTTLRPHASLWDGHLGNIDAVQHHI---PTTGPPLATQPYRVGPASRDSIDAELQRMKEMDVIEPAEGPWASPVVLIPKPDGSVRFCVDYRRLNAVTTKDSYALPRVDDSLDSLGGAQYFSTLDAN 698          
BLAST of Gcaud7484.t1 vs. uniprot
Match: UPI001E1DE006 (uncharacterized protein LOC123544159 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DE006)

HSP 1 Score: 128 bits (322), Expect = 7.840e-31
Identity = 77/225 (34.22%), Postives = 115/225 (51.11%), Query Frame = 0
Query:   79 LAVANGIAHIEPDKPYNVLVPNLGSTTQCLVKNQVTGSVMPHPTAIISTRMTATDVLGLVHSKEGKDAAKSSLTSSISLGDTSAVAEKQRGPTSYNQIDPVKEVEELDLGLLPESHREKLCVMLRELTTMWDGSLEEIKKTEHRIDLLPNTRPVVQHPYRAGPKASEEEQFQVDKMLRAGVIEPAQSPWVYPVVLAPKPDGSWCFCIDYRRLNAVTVKDVYPIPR 303
            +++A+G+A +  + P+ V + N    +  L K  V GS    P  II+                     ++ +T +    DT++  E+   P   +  D V+ ++ L+L       R+ +  ML     MWDG L  +  T HRI++    +PV   PYRAG +A   E+ ++D+ML   VIEPA   W  P+VL PKPDGS  FC+DYRRLNA+TV D YP P+
Sbjct:  140 VSLASGVADVRSNVPFRVRLLNPSDRSITLSKGMVVGSATLRPQRIITV----------------DPGVETLITQADEDCDTTSSMEQTEPPPPTSWKDDVR-LDHLEL-----EERQAVLRMLEPHHKMWDGHLGTVAATSHRIEVTAGAKPVHCQPYRAGSRARSAEKEEIDRMLAEHVIEPATCEWASPIVLVPKPDGSLRFCVDYRRLNAITVPDTYPPPK 342          
The following BLAST results are available for this feature:
BLAST of Gcaud7484.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E1D3E384.440e-5545.38uncharacterized protein LOC123544752 n=1 Tax=Merce... [more]
R7QIA9_CHOCR7.260e-5239.32Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI001E1DB02D3.390e-4940.08uncharacterized protein LOC123543982 n=1 Tax=Merce... [more]
UPI001E1DEA693.480e-3937.14uncharacterized protein LOC123544193 n=1 Tax=Merce... [more]
R7QMC5_CHOCR3.800e-3551.52Integrase catalytic domain-containing protein n=1 ... [more]
UPI001E1D9CF01.270e-3436.99uncharacterized protein LOC123544487 n=1 Tax=Merce... [more]
R7QHJ7_CHOCR8.200e-3255.14Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QJR5_CHOCR1.060e-3147.59Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI001E1D2C1D1.630e-3141.62uncharacterized protein LOC123544039 n=1 Tax=Merce... [more]
UPI001E1DE0067.840e-3134.22uncharacterized protein LOC123544159 n=1 Tax=Merce... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 220..298
e-value: 1.9E-32
score: 114.3
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 167..321
NoneNo IPR availablePANTHERPTHR24559:SF363SUBFAMILY NOT NAMEDcoord: 167..321
NoneNo IPR availableCDDcd01647RT_LTRcoord: 258..322
e-value: 1.91368E-25
score: 98.4365
IPR043128Reverse transcriptase/Diguanylate cyclase domainGENE3D3.30.70.270coord: 299..322
e-value: 1.9E-32
score: 114.3
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 206..322

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_536_length_22659_cov_4.629520contigNODE_536_length_22659_cov_4.629520:20268..21593 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7484.t1Gcaud7484.t1Gracilaria caudata M_176_S67 malemRNANODE_536_length_22659_cov_4.629520 20268..21593 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7484.t1 ID=Gcaud7484.t1|Name=Gcaud7484.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=324bp
MAKRNYKVYVDLGLSAQFMVRCLTVLDTEACPNVIVEDLLPLPLRSRKLP
DATFNIANANNNQFTTVGTIDLVYDGYHLAVANGIAHIEPDKPYNVLVPN
LGSTTQCLVKNQVTGSVMPHPTAIISTRMTATDVLGLVHSKEGKDAAKSS
LTSSISLGDTSAVAEKQRGPTSYNQIDPVKEVEELDLGLLPESHREKLCV
MLRELTTMWDGSLEEIKKTEHRIDLLPNTRPVVQHPYRAGPKASEEEQFQ
VDKMLRAGVIEPAQSPWVYPVVLAPKPDGSWCFCIDYRRLNAVTVKDVYP
IPRMEEYIDSLGNANMFTALDAN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR043128Rev_trsase/Diguanyl_cyclase
IPR043502DNA/RNA_pol_sf