Gcaud1215.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1215.t1
Unique NameGcaud1215.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length522
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5366_length_1623_cov_4.898172contigNODE_5366_length_1623_cov_4.898172:2..1566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704598.1
Preferred nameSPY
PFAMsGlyco_transf_41,TPR_1,TPR_10,TPR_16,TPR_8
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
GOsGO:0001101,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0007154,GO:0007165,GO:0008150,GO:0008194,GO:0008375,GO:0009719,GO:0009725,GO:0009735,GO:0009736,GO:0009739,GO:0009740,GO:0009755,GO:0009937,GO:0009938,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010476,GO:0010646,GO:0010648,GO:0016262,GO:0016740,GO:0016757,GO:0016758,GO:0019222,GO:0023051,GO:0023052,GO:0023057,GO:0031323,GO:0032870,GO:0033993,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070887,GO:0071229,GO:0071310,GO:0071368,GO:0071370,GO:0071396,GO:0071495,GO:0140096,GO:1901700,GO:1901701,GO:2000377
Evalue4.05e-75
EggNOG OGsCOG3914@1|root,KOG4626@2759|Eukaryota
Descriptionprotein N-acetylglucosaminyltransferase activity
COG categoryO
BRITEko00000,ko00001,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1215Gcaud1215Gracilaria caudata M_176_S67 malegeneNODE_5366_length_1623_cov_4.898172 2..1566 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1215.t1.CDS1Gcaud1215.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_5366_length_1623_cov_4.898172 2..1566 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1215.t1.exon1Gcaud1215.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_5366_length_1623_cov_4.898172 2..1566 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1215.t1.start1Gcaud1215.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_5366_length_1623_cov_4.898172 1564..1566 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1215.t1Gcaud1215.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_5366_length_1623_cov_4.898172 2..1566 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1215.t1 ID=Gcaud1215.t1|Name=Gcaud1215.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=522bp
MAGLPADAVKHYSEALEVCPTYAQAMYNMAVAHADTSHTDKAKMFYEQCL
QQNSSHVEAWCNLGVLHRNDGNADLAMRAYEKALSCNPNYELAKSNLAVA
LCEKGTAIKQADPKLAKKLYKRALALQPCFSDAHYNLGVLYAETGKLERA
LLSYNLAVQFNPCLTEAYNNLGVVHKELGNMQKALECYKLALQRDRQHHQ
THNNIAVVYTLLGDIDSASEHLRTANAISPHYAEAYNNIGVLLRDQGDID
LAIKHYERCYEIDPRADMAAQNRLHALNYSEEWSKAQVYEQHLAWGTAFQ
KRIDDEIVQAANGSQTDNPIAVHLLRCLENPPRPDPNRPRGPNTDSPLRI
GYLSPDFFTHSVSYFAEVLLQKYDTTGFEIYAYANVAQPDSKTVRFQQLL
KGRWRNIWGFTASAAAKVIVEDEIDILVELAGHTANNRLDIMALRLAPVQ
VTWIGYPNTTGLKTIHYRVTDGTVDPLSTSQQFSEKLWRLPDVFLCYTPS
IEAPEEPSEPPLQSSGGIVTFG
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spliced messenger RNA

>Gcaud1215.t1 ID=Gcaud1215.t1|Name=Gcaud1215.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1565bp|location=Sequence derived from alignment at NODE_5366_length_1623_cov_4.898172:2..1566- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGGATTGCCGGCTGATGCAGTCAAGCATTATTCGGAGGCTCTGGA
GGTGTGTCCCACATACGCACAGGCCATGTATAACATGGCCGTCGCCCATG
CAGACACATCGCACACCGACAAGGCTAAAATGTTCTACGAGCAATGTCTC
CAGCAAAATTCTTCGCATGTGGAAGCCTGGTGCAACCTGGGAGTGTTGCA
CAGAAACGATGGAAATGCAGATCTGGCTATGCGCGCCTACGAAAAAGCGC
TCTCTTGCAATCCGAACTACGAACTGGCCAAAAGCAACCTCGCTGTCGCT
CTCTGCGAAAAGGGTACTGCAATCAAGCAAGCCGACCCCAAATTGGCGAA
GAAGCTCTACAAGCGCGCCCTTGCTCTCCAGCCTTGCTTTTCCGACGCTC
ATTACAATCTTGGCGTACTCTACGCCGAAACTGGAAAGCTTGAGCGCGCT
CTACTTTCGTACAATCTTGCTGTTCAATTTAACCCATGTCTAACTGAGGC
TTACAATAATCTAGGAGTGGTGCACAAGGAACTTGGAAACATGCAAAAGG
CGCTGGAATGCTACAAACTTGCTTTGCAACGCGATCGCCAGCATCATCAA
ACTCACAATAACATTGCCGTCGTCTACACTCTATTGGGAGACATAGATTC
TGCAAGCGAGCATTTGCGCACTGCCAATGCCATATCTCCGCACTATGCAG
AAGCATACAATAACATCGGCGTTCTCTTAAGAGATCAAGGTGATATTGAT
CTCGCAATCAAACACTACGAGCGATGTTACGAGATCGATCCACGTGCCGA
TATGGCTGCCCAAAACCGTTTGCATGCCCTCAACTACAGCGAAGAATGGA
GCAAAGCACAGGTTTACGAGCAACATTTGGCGTGGGGAACTGCCTTTCAA
AAGCGCATTGATGACGAAATAGTGCAAGCTGCTAACGGATCACAAACAGA
CAATCCGATTGCGGTACACTTGCTTCGGTGTTTGGAAAACCCTCCGCGTC
CAGATCCAAACCGACCTCGTGGCCCGAATACCGATAGCCCACTGCGAATA
GGTTACCTTTCGCCAGACTTCTTCACACACTCAGTGAGCTATTTTGCTGA
AGTTCTTTTGCAGAAGTACGACACGACCGGCTTCGAAATATATGCGTATG
CCAACGTCGCGCAGCCTGACTCAAAGACTGTTCGTTTCCAACAGCTTTTG
AAGGGTCGGTGGCGCAATATCTGGGGGTTTACAGCGTCCGCGGCGGCCAA
GGTCATTGTCGAAGACGAGATCGATATTCTGGTAGAACTGGCTGGGCATA
CCGCTAACAATCGTCTGGACATTATGGCACTTCGTCTCGCGCCGGTTCAG
GTCACCTGGATTGGTTACCCAAACACAACTGGTCTGAAGACCATACACTA
CCGGGTCACCGATGGCACGGTTGATCCGCTTAGTACGTCCCAGCAGTTTT
CGGAGAAGCTGTGGCGACTGCCTGACGTTTTTCTTTGTTACACACCGTCC
ATTGAGGCGCCAGAAGAGCCCAGTGAACCACCACTGCAATCATCAGGCGG
TATTGTCACCTTTGG
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protein sequence of Gcaud1215.t1

>Gcaud1215.t1 ID=Gcaud1215.t1|Name=Gcaud1215.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=522bp
MAGLPADAVKHYSEALEVCPTYAQAMYNMAVAHADTSHTDKAKMFYEQCL
QQNSSHVEAWCNLGVLHRNDGNADLAMRAYEKALSCNPNYELAKSNLAVA
LCEKGTAIKQADPKLAKKLYKRALALQPCFSDAHYNLGVLYAETGKLERA
LLSYNLAVQFNPCLTEAYNNLGVVHKELGNMQKALECYKLALQRDRQHHQ
THNNIAVVYTLLGDIDSASEHLRTANAISPHYAEAYNNIGVLLRDQGDID
LAIKHYERCYEIDPRADMAAQNRLHALNYSEEWSKAQVYEQHLAWGTAFQ
KRIDDEIVQAANGSQTDNPIAVHLLRCLENPPRPDPNRPRGPNTDSPLRI
GYLSPDFFTHSVSYFAEVLLQKYDTTGFEIYAYANVAQPDSKTVRFQQLL
KGRWRNIWGFTASAAAKVIVEDEIDILVELAGHTANNRLDIMALRLAPVQ
VTWIGYPNTTGLKTIHYRVTDGTVDPLSTSQQFSEKLWRLPDVFLCYTPS
IEAPEEPSEPPLQSSGGIVTFG
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mRNA from alignment at NODE_5366_length_1623_cov_4.898172:2..1566-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1215.t1 ID=Gcaud1215.t1|Name=Gcaud1215.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1565bp|location=Sequence derived from alignment at NODE_5366_length_1623_cov_4.898172:2..1566- (Gracilaria caudata M_176_S67 male)
ATGGCAGGATTGCCGGCTGATGCAGTCAAGCATTATTCGGAGGCTCTGGA
GGTGTGTCCCACATACGCACAGGCCATGTATAACATGGCCGTCGCCCATG
CAGACACATCGCACACCGACAAGGCTAAAATGTTCTACGAGCAATGTCTC
CAGCAAAATTCTTCGCATGTGGAAGCCTGGTGCAACCTGGGAGTGTTGCA
CAGAAACGATGGAAATGCAGATCTGGCTATGCGCGCCTACGAAAAAGCGC
TCTCTTGCAATCCGAACTACGAACTGGCCAAAAGCAACCTCGCTGTCGCT
CTCTGCGAAAAGGGTACTGCAATCAAGCAAGCCGACCCCAAATTGGCGAA
GAAGCTCTACAAGCGCGCCCTTGCTCTCCAGCCTTGCTTTTCCGACGCTC
ATTACAATCTTGGCGTACTCTACGCCGAAACTGGAAAGCTTGAGCGCGCT
CTACTTTCGTACAATCTTGCTGTTCAATTTAACCCATGTCTAACTGAGGC
TTACAATAATCTAGGAGTGGTGCACAAGGAACTTGGAAACATGCAAAAGG
CGCTGGAATGCTACAAACTTGCTTTGCAACGCGATCGCCAGCATCATCAA
ACTCACAATAACATTGCCGTCGTCTACACTCTATTGGGAGACATAGATTC
TGCAAGCGAGCATTTGCGCACTGCCAATGCCATATCTCCGCACTATGCAG
AAGCATACAATAACATCGGCGTTCTCTTAAGAGATCAAGGTGATATTGAT
CTCGCAATCAAACACTACGAGCGATGTTACGAGATCGATCCACGTGCCGA
TATGGCTGCCCAAAACCGTTTGCATGCCCTCAACTACAGCGAAGAATGGA
GCAAAGCACAGGTTTACGAGCAACATTTGGCGTGGGGAACTGCCTTTCAA
AAGCGCATTGATGACGAAATAGTGCAAGCTGCTAACGGATCACAAACAGA
CAATCCGATTGCGGTACACTTGCTTCGGTGTTTGGAAAACCCTCCGCGTC
CAGATCCAAACCGACCTCGTGGCCCGAATACCGATAGCCCACTGCGAATA
GGTTACCTTTCGCCAGACTTCTTCACACACTCAGTGAGCTATTTTGCTGA
AGTTCTTTTGCAGAAGTACGACACGACCGGCTTCGAAATATATGCGTATG
CCAACGTCGCGCAGCCTGACTCAAAGACTGTTCGTTTCCAACAGCTTTTG
AAGGGTCGGTGGCGCAATATCTGGGGGTTTACAGCGTCCGCGGCGGCCAA
GGTCATTGTCGAAGACGAGATCGATATTCTGGTAGAACTGGCTGGGCATA
CCGCTAACAATCGTCTGGACATTATGGCACTTCGTCTCGCGCCGGTTCAG
GTCACCTGGATTGGTTACCCAAACACAACTGGTCTGAAGACCATACACTA
CCGGGTCACCGATGGCACGGTTGATCCGCTTAGTACGTCCCAGCAGTTTT
CGGAGAAGCTGTGGCGACTGCCTGACGTTTTTCTTTGTTACACACCGTCC
ATTGAGGCGCCAGAAGAGCCCAGTGAACCACCACTGCAATCATCAGGCGG
TATTGTCACCTTTGG
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Coding sequence (CDS) from alignment at NODE_5366_length_1623_cov_4.898172:2..1566-

>Gcaud1215.t1 ID=Gcaud1215.t1|Name=Gcaud1215.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1565bp|location=Sequence derived from alignment at NODE_5366_length_1623_cov_4.898172:2..1566- (Gracilaria caudata M_176_S67 male)
ATGGCAGGATTGCCGGCTGATGCAGTCAAGCATTATTCGGAGGCTCTGGA
GGTGTGTCCCACATACGCACAGGCCATGTATAACATGGCCGTCGCCCATG
CAGACACATCGCACACCGACAAGGCTAAAATGTTCTACGAGCAATGTCTC
CAGCAAAATTCTTCGCATGTGGAAGCCTGGTGCAACCTGGGAGTGTTGCA
CAGAAACGATGGAAATGCAGATCTGGCTATGCGCGCCTACGAAAAAGCGC
TCTCTTGCAATCCGAACTACGAACTGGCCAAAAGCAACCTCGCTGTCGCT
CTCTGCGAAAAGGGTACTGCAATCAAGCAAGCCGACCCCAAATTGGCGAA
GAAGCTCTACAAGCGCGCCCTTGCTCTCCAGCCTTGCTTTTCCGACGCTC
ATTACAATCTTGGCGTACTCTACGCCGAAACTGGAAAGCTTGAGCGCGCT
CTACTTTCGTACAATCTTGCTGTTCAATTTAACCCATGTCTAACTGAGGC
TTACAATAATCTAGGAGTGGTGCACAAGGAACTTGGAAACATGCAAAAGG
CGCTGGAATGCTACAAACTTGCTTTGCAACGCGATCGCCAGCATCATCAA
ACTCACAATAACATTGCCGTCGTCTACACTCTATTGGGAGACATAGATTC
TGCAAGCGAGCATTTGCGCACTGCCAATGCCATATCTCCGCACTATGCAG
AAGCATACAATAACATCGGCGTTCTCTTAAGAGATCAAGGTGATATTGAT
CTCGCAATCAAACACTACGAGCGATGTTACGAGATCGATCCACGTGCCGA
TATGGCTGCCCAAAACCGTTTGCATGCCCTCAACTACAGCGAAGAATGGA
GCAAAGCACAGGTTTACGAGCAACATTTGGCGTGGGGAACTGCCTTTCAA
AAGCGCATTGATGACGAAATAGTGCAAGCTGCTAACGGATCACAAACAGA
CAATCCGATTGCGGTACACTTGCTTCGGTGTTTGGAAAACCCTCCGCGTC
CAGATCCAAACCGACCTCGTGGCCCGAATACCGATAGCCCACTGCGAATA
GGTTACCTTTCGCCAGACTTCTTCACACACTCAGTGAGCTATTTTGCTGA
AGTTCTTTTGCAGAAGTACGACACGACCGGCTTCGAAATATATGCGTATG
CCAACGTCGCGCAGCCTGACTCAAAGACTGTTCGTTTCCAACAGCTTTTG
AAGGGTCGGTGGCGCAATATCTGGGGGTTTACAGCGTCCGCGGCGGCCAA
GGTCATTGTCGAAGACGAGATCGATATTCTGGTAGAACTGGCTGGGCATA
CCGCTAACAATCGTCTGGACATTATGGCACTTCGTCTCGCGCCGGTTCAG
GTCACCTGGATTGGTTACCCAAACACAACTGGTCTGAAGACCATACACTA
CCGGGTCACCGATGGCACGGTTGATCCGCTTAGTACGTCCCAGCAGTTTT
CGGAGAAGCTGTGGCGACTGCCTGACGTTTTTCTTTGTTACACACCGTCC
ATTGAGGCGCCAGAAGAGCCCAGTGAACCACCACTGCAATCATCAGGCGG
TATTGTCACCTTTGG
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