Gcaud9170.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9170.t1
Unique NameGcaud9170.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length235
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_526_length_22991_cov_4.374716contigNODE_526_length_22991_cov_4.374716:5120..5891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1385935.N836_27170
Preferred namehetI
PFAMsACPS
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00002
KEGG koko:K06133
KEGG ReactionR01625
KEGG Pathwayko00770,map00770
GOsGO:0003674,GO:0003824,GO:0006082,GO:0006520,GO:0006553,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008897,GO:0009058,GO:0009066,GO:0009067,GO:0009085,GO:0009987,GO:0016053,GO:0016740,GO:0016772,GO:0016780,GO:0019752,GO:0019878,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue1.48e-23
EggNOG OGsCOG2091@1|root,COG2091@2|Bacteria,1G5GA@1117|Cyanobacteria,1HAPE@1150|Oscillatoriales
DescriptionBelongs to the P-Pant transferase superfamily
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9170Gcaud9170Gracilaria caudata M_176_S67 malegeneNODE_526_length_22991_cov_4.374716 5120..5891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9170.t1Gcaud9170.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_526_length_22991_cov_4.374716 5120..5891 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9170.t1.start1Gcaud9170.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_526_length_22991_cov_4.374716 5120..5122 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9170.t1.CDS1Gcaud9170.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_526_length_22991_cov_4.374716 5120..5248 +
Gcaud9170.t1.CDS2Gcaud9170.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_526_length_22991_cov_4.374716 5316..5891 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9170.t1.exon1Gcaud9170.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_526_length_22991_cov_4.374716 5120..5248 +
Gcaud9170.t1.exon2Gcaud9170.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_526_length_22991_cov_4.374716 5316..5891 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9170.t1.intron1Gcaud9170.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_526_length_22991_cov_4.374716 5249..5315 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9170.t1.stop1Gcaud9170.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_526_length_22991_cov_4.374716 5889..5891 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9170.t1 ID=Gcaud9170.t1|Name=Gcaud9170.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=235bp
MQSIRNGIDVWKVNLCDVRLRRMWADVLSEEELVRAKNIKSAQTREQFRS
SRVFVRNVLARYLRHTSSAELQFRRGKHGKPQLHESERLRFNVAHTGDVG
LLCVSSDREVGIDIERTDRRIRNVRSLMRKSLHDDEIQVLGAGSGDEDAL
RVNFLRAWTRKEAFVKCTGDGISRGLRSFTVDERTGLVHDHTAGAAARFR
VIDVPVDRQHAASLCFALAETGSASMPHLRLLRW*
back to top

spliced messenger RNA

>Gcaud9170.t1 ID=Gcaud9170.t1|Name=Gcaud9170.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=705bp|location=Sequence derived from alignment at NODE_526_length_22991_cov_4.374716:5120..5891+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAGCATACGAAACGGAATCGACGTGTGGAAGGTTAACCTATGTGA
TGTTCGACTGAGACGCATGTGGGCTGACGTGCTCAGCGAAGAAGAACTGG
TTCGAGCAAAGAACATCAAAAGTGCCCAGACTCGCGAGCAATTCCGTTCA
AGCAGAGTATTCGTACGCAACGTGCTGGCGCGGTATCTGCGTCACACTAG
CTCAGCCGAATTACAATTCAGGCGAGGGAAACACGGCAAACCGCAACTAC
ACGAGAGCGAGCGTCTGAGGTTCAACGTAGCGCATACGGGCGACGTCGGT
TTGCTGTGCGTATCGAGCGACAGAGAGGTGGGCATCGACATTGAAAGAAC
GGACCGACGAATACGAAATGTGCGCAGTCTGATGCGCAAAAGTCTTCATG
ACGACGAGATACAGGTTCTGGGCGCTGGCAGCGGCGACGAGGACGCGCTT
CGCGTGAACTTCCTTCGCGCGTGGACGCGGAAGGAGGCGTTCGTCAAATG
CACGGGCGACGGCATTTCGCGCGGACTGCGCTCGTTCACGGTGGACGAGC
GCACCGGGCTGGTGCACGACCACACGGCCGGCGCCGCGGCGCGCTTTCGC
GTCATAGACGTGCCCGTCGACCGTCAGCACGCCGCTTCTCTTTGCTTCGC
ACTGGCGGAGACGGGGAGCGCTTCAATGCCGCACCTCCGCCTGCTCCGCT
GGTGA
back to top

protein sequence of Gcaud9170.t1

>Gcaud9170.t1 ID=Gcaud9170.t1|Name=Gcaud9170.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=235bp
MQSIRNGIDVWKVNLCDVRLRRMWADVLSEEELVRAKNIKSAQTREQFRS
SRVFVRNVLARYLRHTSSAELQFRRGKHGKPQLHESERLRFNVAHTGDVG
LLCVSSDREVGIDIERTDRRIRNVRSLMRKSLHDDEIQVLGAGSGDEDAL
RVNFLRAWTRKEAFVKCTGDGISRGLRSFTVDERTGLVHDHTAGAAARFR
VIDVPVDRQHAASLCFALAETGSASMPHLRLLRW*
back to top

mRNA from alignment at NODE_526_length_22991_cov_4.374716:5120..5891+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9170.t1 ID=Gcaud9170.t1|Name=Gcaud9170.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=772bp|location=Sequence derived from alignment at NODE_526_length_22991_cov_4.374716:5120..5891+ (Gracilaria caudata M_176_S67 male)
ATGCAGAGCATACGAAACGGAATCGACGTGTGGAAGGTTAACCTATGTGA
TGTTCGACTGAGACGCATGTGGGCTGACGTGCTCAGCGAAGAAGAACTGG
TTCGAGCAAAGAACATCAAAAGTGCCCAGGTACGTTACATGGCAACATAA
GGACGCAAGCAGACGGCATCTGACGGAAAGCTGGTGTCTGATATAGACTC
GCGAGCAATTCCGTTCAAGCAGAGTATTCGTACGCAACGTGCTGGCGCGG
TATCTGCGTCACACTAGCTCAGCCGAATTACAATTCAGGCGAGGGAAACA
CGGCAAACCGCAACTACACGAGAGCGAGCGTCTGAGGTTCAACGTAGCGC
ATACGGGCGACGTCGGTTTGCTGTGCGTATCGAGCGACAGAGAGGTGGGC
ATCGACATTGAAAGAACGGACCGACGAATACGAAATGTGCGCAGTCTGAT
GCGCAAAAGTCTTCATGACGACGAGATACAGGTTCTGGGCGCTGGCAGCG
GCGACGAGGACGCGCTTCGCGTGAACTTCCTTCGCGCGTGGACGCGGAAG
GAGGCGTTCGTCAAATGCACGGGCGACGGCATTTCGCGCGGACTGCGCTC
GTTCACGGTGGACGAGCGCACCGGGCTGGTGCACGACCACACGGCCGGCG
CCGCGGCGCGCTTTCGCGTCATAGACGTGCCCGTCGACCGTCAGCACGCC
GCTTCTCTTTGCTTCGCACTGGCGGAGACGGGGAGCGCTTCAATGCCGCA
CCTCCGCCTGCTCCGCTGGTGA
back to top

Coding sequence (CDS) from alignment at NODE_526_length_22991_cov_4.374716:5120..5891+

>Gcaud9170.t1 ID=Gcaud9170.t1|Name=Gcaud9170.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=705bp|location=Sequence derived from alignment at NODE_526_length_22991_cov_4.374716:5120..5891+ (Gracilaria caudata M_176_S67 male)
ATGCAGAGCATACGAAACGGAATCGACGTGTGGAAGGTTAACCTATGTGA
TGTTCGACTGAGACGCATGTGGGCTGACGTGCTCAGCGAAGAAGAACTGG
TTCGAGCAAAGAACATCAAAAGTGCCCAGACTCGCGAGCAATTCCGTTCA
AGCAGAGTATTCGTACGCAACGTGCTGGCGCGGTATCTGCGTCACACTAG
CTCAGCCGAATTACAATTCAGGCGAGGGAAACACGGCAAACCGCAACTAC
ACGAGAGCGAGCGTCTGAGGTTCAACGTAGCGCATACGGGCGACGTCGGT
TTGCTGTGCGTATCGAGCGACAGAGAGGTGGGCATCGACATTGAAAGAAC
GGACCGACGAATACGAAATGTGCGCAGTCTGATGCGCAAAAGTCTTCATG
ACGACGAGATACAGGTTCTGGGCGCTGGCAGCGGCGACGAGGACGCGCTT
CGCGTGAACTTCCTTCGCGCGTGGACGCGGAAGGAGGCGTTCGTCAAATG
CACGGGCGACGGCATTTCGCGCGGACTGCGCTCGTTCACGGTGGACGAGC
GCACCGGGCTGGTGCACGACCACACGGCCGGCGCCGCGGCGCGCTTTCGC
GTCATAGACGTGCCCGTCGACCGTCAGCACGCCGCTTCTCTTTGCTTCGC
ACTGGCGGAGACGGGGAGCGCTTCAATGCCGCACCTCCGCCTGCTCCGCT
GGTGA
back to top