Gcaud9169.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9169.t1
Unique Name	Gcaud9169.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	607

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_526_length_22991_cov_4.374716	contig	NODE_526_length_22991_cov_4.374716:2086..4014 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703819.1
PFAMs	Glyco_transf_90
Max annot lvl	2759\|Eukaryota
Evalue	3.72e-103
EggNOG OGs	KOG2458@1\|root,KOG2458@2759\|Eukaryota
Description	glucosyltransferase activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9169	Gcaud9169	Gracilaria caudata M_176_S67 male	gene	NODE_526_length_22991_cov_4.374716 2086..4014 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9169.t1	Gcaud9169.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_526_length_22991_cov_4.374716 2086..4014 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9169.t1.stop1	Gcaud9169.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_526_length_22991_cov_4.374716 2086..2088 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9169.t1.CDS1	Gcaud9169.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_526_length_22991_cov_4.374716 2086..3612 -
Gcaud9169.t1.CDS2	Gcaud9169.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_526_length_22991_cov_4.374716 3721..4014 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9169.t1.exon1	Gcaud9169.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_526_length_22991_cov_4.374716 2086..3612 -
Gcaud9169.t1.exon2	Gcaud9169.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_526_length_22991_cov_4.374716 3721..4014 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9169.t1.intron1	Gcaud9169.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_526_length_22991_cov_4.374716 3613..3720 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9169.t1.start1	Gcaud9169.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_526_length_22991_cov_4.374716 4012..4014 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_526_length_22991_cov_4.374716:2086..4014-
coding sequence from alignment at NODE_526_length_22991_cov_4.374716:2086..4014-

mRNA sequence

>Gcaud9169.t1 ID=Gcaud9169.t1|Name=Gcaud9169.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=607bp
MSNMFWTGTTREYYSTDSDASDFSDVEEGGWTRVSHRRPVKSKNTRQRTH
SGKRTSWFARFLNSSNSSSSSRRRTKKNSKKSRMRIGVCPYSSQGCGMIL
LAVLLTVYLADFFSLLVWDSTGIGYRTDHADRSNTLKENMASSNRYSASA
NQTVSQMKGETQFSHVQTRNGDGTVSLENKSDAREEGTVQTAPADQNSDL
GVEQEEQQSAELPRHPMNRNIVELQIPGGTGVLSIKTVKDYYRKLAKAYL
ETFSAGIHRQMFFDILRRRTYSLTPPGANKGVQTILFQIIDGRVYMMDPY
EVPRNSKPFYRTRINEVIWLLSRLAEEGRIKNTEFLMAIHDCVQTVNKEH
TYRGAHYSESNPAFTIVSCNFSNNVPFPMWEGSKHRDGGFSGWDETMRQY
AVDDIPWEQKQDRAVFRGGNRPSMYFQNKSDADLHCQDVGRTRLLYLSQQ
QPDVLDVSVGGTCAGVHTQLQRLEPKEHHRYKYILYAEGNCMWADRTRHQ
VFGPSLMIKQETPCGQFFEPLLRPNTHYVPTDFFFTDTIEKISWARQNEG
AVREMIKNANEFGHNFLSLKAIESYVEVLLEEYTSLLVEPEIKLENGAID
VTHRQV*

spliced messenger RNA

>Gcaud9169.t1 ID=Gcaud9169.t1|Name=Gcaud9169.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1821bp|location=Sequence derived from alignment at NODE_526_length_22991_cov_4.374716:2086..4014- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAACATGTTTTGGACAGGAACAACCCGTGAATACTATTCAACTGA
TTCTGACGCGTCGGACTTCTCCGATGTTGAAGAAGGAGGATGGACTCGGG
TTTCACATCGTCGCCCTGTCAAATCCAAGAATACGAGGCAGCGCACCCAT
TCTGGAAAGAGAACATCGTGGTTTGCTCGTTTCCTAAATTCGTCCAACTC
ATCTTCGTCCTCGCGCAGAAGAACAAAGAAAAATAGCAAAAAGTCGCGGA
TGCGCATTGGCGTATGCCCGTATTCGTCCCAAGGCTGTGGAATGATTCTT
CTGGCTGTTCTGCTCACTGTGTACCTGGCGGATTTCTTCAGCTTACTTGT
CTGGGACTCCACAGGAATTGGGTACAGAACTGATCATGCGGATCGTTCTA
ACACCCTGAAAGAGAACATGGCATCCAGTAATCGTTACTCAGCTTCCGCG
AATCAAACAGTTTCTCAAATGAAAGGAGAAACACAGTTTAGCCATGTACA
AACGCGAAATGGTGATGGAACCGTAAGTCTCGAAAACAAGAGTGATGCTC
GGGAAGAAGGAACGGTTCAAACTGCTCCTGCGGACCAAAATTCGGATCTA
GGTGTGGAACAGGAGGAGCAGCAAAGCGCGGAACTACCAAGGCACCCTAT
GAATCGGAACATTGTTGAACTGCAAATTCCCGGTGGAACTGGAGTTCTTT
CTATCAAAACTGTTAAAGACTACTATCGAAAGTTGGCAAAGGCGTATTTG
GAAACCTTCAGTGCCGGAATACACCGCCAGATGTTCTTCGATATCTTGCG
AAGAAGAACCTATTCTCTAACACCGCCAGGAGCGAACAAAGGCGTTCAAA
CAATCTTGTTTCAAATTATTGATGGTAGGGTGTATATGATGGATCCATAC
GAAGTTCCGAGAAACTCAAAGCCGTTTTACAGGACGCGAATCAATGAGGT
CATATGGCTACTTTCCAGACTTGCTGAAGAAGGGCGTATAAAGAACACAG
AGTTTCTCATGGCTATCCATGACTGCGTTCAAACTGTCAACAAGGAACAC
ACTTACCGAGGAGCGCACTACTCTGAGAGCAACCCTGCGTTCACAATTGT
ATCCTGCAATTTCTCTAATAACGTTCCTTTCCCCATGTGGGAAGGAAGCA
AGCACAGAGACGGAGGGTTTTCAGGCTGGGATGAGACCATGAGGCAGTAC
GCAGTTGATGACATTCCGTGGGAACAGAAGCAAGATAGGGCGGTGTTCAG
GGGTGGGAATAGACCGAGCATGTACTTCCAAAACAAGTCAGACGCAGATT
TGCATTGCCAAGATGTTGGGAGAACGAGACTTCTGTACTTGTCCCAACAG
CAACCAGACGTTCTCGATGTCTCCGTCGGCGGTACTTGCGCAGGAGTGCA
CACCCAGTTGCAACGTCTGGAACCAAAGGAACACCACAGATACAAGTACA
TTTTGTACGCGGAAGGCAACTGCATGTGGGCTGACCGTACTAGGCATCAG
GTTTTTGGACCATCACTCATGATCAAACAAGAAACTCCGTGCGGACAATT
CTTCGAACCACTTCTTCGACCAAACACGCACTATGTCCCGACGGATTTCT
TCTTTACAGATACCATTGAAAAGATCTCCTGGGCTCGTCAGAACGAAGGT
GCAGTCCGGGAAATGATCAAGAACGCGAATGAGTTTGGGCACAATTTCCT
ATCTTTGAAAGCAATTGAATCGTATGTGGAGGTTTTACTTGAAGAGTATA
CTTCATTGTTAGTGGAGCCTGAGATTAAGCTAGAAAATGGAGCTATTGAT
GTAACGCACAGGCAGGTATGA

protein sequence of Gcaud9169.t1

>Gcaud9169.t1 ID=Gcaud9169.t1|Name=Gcaud9169.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=607bp
MSNMFWTGTTREYYSTDSDASDFSDVEEGGWTRVSHRRPVKSKNTRQRTH
SGKRTSWFARFLNSSNSSSSSRRRTKKNSKKSRMRIGVCPYSSQGCGMIL
LAVLLTVYLADFFSLLVWDSTGIGYRTDHADRSNTLKENMASSNRYSASA
NQTVSQMKGETQFSHVQTRNGDGTVSLENKSDAREEGTVQTAPADQNSDL
GVEQEEQQSAELPRHPMNRNIVELQIPGGTGVLSIKTVKDYYRKLAKAYL
ETFSAGIHRQMFFDILRRRTYSLTPPGANKGVQTILFQIIDGRVYMMDPY
EVPRNSKPFYRTRINEVIWLLSRLAEEGRIKNTEFLMAIHDCVQTVNKEH
TYRGAHYSESNPAFTIVSCNFSNNVPFPMWEGSKHRDGGFSGWDETMRQY
AVDDIPWEQKQDRAVFRGGNRPSMYFQNKSDADLHCQDVGRTRLLYLSQQ
QPDVLDVSVGGTCAGVHTQLQRLEPKEHHRYKYILYAEGNCMWADRTRHQ
VFGPSLMIKQETPCGQFFEPLLRPNTHYVPTDFFFTDTIEKISWARQNEG
AVREMIKNANEFGHNFLSLKAIESYVEVLLEEYTSLLVEPEIKLENGAID
VTHRQV*

mRNA from alignment at NODE_526_length_22991_cov_4.374716:2086..4014-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9169.t1 ID=Gcaud9169.t1|Name=Gcaud9169.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1929bp|location=Sequence derived from alignment at NODE_526_length_22991_cov_4.374716:2086..4014- (Gracilaria caudata M_176_S67 male)
ATGTCCAACATGTTTTGGACAGGAACAACCCGTGAATACTATTCAACTGA
TTCTGACGCGTCGGACTTCTCCGATGTTGAAGAAGGAGGATGGACTCGGG
TTTCACATCGTCGCCCTGTCAAATCCAAGAATACGAGGCAGCGCACCCAT
TCTGGAAAGAGAACATCGTGGTTTGCTCGTTTCCTAAATTCGTCCAACTC
ATCTTCGTCCTCGCGCAGAAGAACAAAGAAAAATAGCAAAAAGTCGCGGA
TGCGCATTGGCGTATGCCCGTATTCGTCCCAAGGCTGTGGAATGGTACGT
CCATATTACATACTTTTGCTGCTGCCGTCATGCAAAATAGTACTACTTGC
ACAGAAACGCTTGCTAACACCGTTTGTTCTTCGTTCTTGTTTCTTTCGAA
AGATTCTTCTGGCTGTTCTGCTCACTGTGTACCTGGCGGATTTCTTCAGC
TTACTTGTCTGGGACTCCACAGGAATTGGGTACAGAACTGATCATGCGGA
TCGTTCTAACACCCTGAAAGAGAACATGGCATCCAGTAATCGTTACTCAG
CTTCCGCGAATCAAACAGTTTCTCAAATGAAAGGAGAAACACAGTTTAGC
CATGTACAAACGCGAAATGGTGATGGAACCGTAAGTCTCGAAAACAAGAG
TGATGCTCGGGAAGAAGGAACGGTTCAAACTGCTCCTGCGGACCAAAATT
CGGATCTAGGTGTGGAACAGGAGGAGCAGCAAAGCGCGGAACTACCAAGG
CACCCTATGAATCGGAACATTGTTGAACTGCAAATTCCCGGTGGAACTGG
AGTTCTTTCTATCAAAACTGTTAAAGACTACTATCGAAAGTTGGCAAAGG
CGTATTTGGAAACCTTCAGTGCCGGAATACACCGCCAGATGTTCTTCGAT
ATCTTGCGAAGAAGAACCTATTCTCTAACACCGCCAGGAGCGAACAAAGG
CGTTCAAACAATCTTGTTTCAAATTATTGATGGTAGGGTGTATATGATGG
ATCCATACGAAGTTCCGAGAAACTCAAAGCCGTTTTACAGGACGCGAATC
AATGAGGTCATATGGCTACTTTCCAGACTTGCTGAAGAAGGGCGTATAAA
GAACACAGAGTTTCTCATGGCTATCCATGACTGCGTTCAAACTGTCAACA
AGGAACACACTTACCGAGGAGCGCACTACTCTGAGAGCAACCCTGCGTTC
ACAATTGTATCCTGCAATTTCTCTAATAACGTTCCTTTCCCCATGTGGGA
AGGAAGCAAGCACAGAGACGGAGGGTTTTCAGGCTGGGATGAGACCATGA
GGCAGTACGCAGTTGATGACATTCCGTGGGAACAGAAGCAAGATAGGGCG
GTGTTCAGGGGTGGGAATAGACCGAGCATGTACTTCCAAAACAAGTCAGA
CGCAGATTTGCATTGCCAAGATGTTGGGAGAACGAGACTTCTGTACTTGT
CCCAACAGCAACCAGACGTTCTCGATGTCTCCGTCGGCGGTACTTGCGCA
GGAGTGCACACCCAGTTGCAACGTCTGGAACCAAAGGAACACCACAGATA
CAAGTACATTTTGTACGCGGAAGGCAACTGCATGTGGGCTGACCGTACTA
GGCATCAGGTTTTTGGACCATCACTCATGATCAAACAAGAAACTCCGTGC
GGACAATTCTTCGAACCACTTCTTCGACCAAACACGCACTATGTCCCGAC
GGATTTCTTCTTTACAGATACCATTGAAAAGATCTCCTGGGCTCGTCAGA
ACGAAGGTGCAGTCCGGGAAATGATCAAGAACGCGAATGAGTTTGGGCAC
AATTTCCTATCTTTGAAAGCAATTGAATCGTATGTGGAGGTTTTACTTGA
AGAGTATACTTCATTGTTAGTGGAGCCTGAGATTAAGCTAGAAAATGGAG
CTATTGATGTAACGCACAGGCAGGTATGA

Coding sequence (CDS) from alignment at NODE_526_length_22991_cov_4.374716:2086..4014-

>Gcaud9169.t1 ID=Gcaud9169.t1|Name=Gcaud9169.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1821bp|location=Sequence derived from alignment at NODE_526_length_22991_cov_4.374716:2086..4014- (Gracilaria caudata M_176_S67 male)
ATGTCCAACATGTTTTGGACAGGAACAACCCGTGAATACTATTCAACTGA
TTCTGACGCGTCGGACTTCTCCGATGTTGAAGAAGGAGGATGGACTCGGG
TTTCACATCGTCGCCCTGTCAAATCCAAGAATACGAGGCAGCGCACCCAT
TCTGGAAAGAGAACATCGTGGTTTGCTCGTTTCCTAAATTCGTCCAACTC
ATCTTCGTCCTCGCGCAGAAGAACAAAGAAAAATAGCAAAAAGTCGCGGA
TGCGCATTGGCGTATGCCCGTATTCGTCCCAAGGCTGTGGAATGATTCTT
CTGGCTGTTCTGCTCACTGTGTACCTGGCGGATTTCTTCAGCTTACTTGT
CTGGGACTCCACAGGAATTGGGTACAGAACTGATCATGCGGATCGTTCTA
ACACCCTGAAAGAGAACATGGCATCCAGTAATCGTTACTCAGCTTCCGCG
AATCAAACAGTTTCTCAAATGAAAGGAGAAACACAGTTTAGCCATGTACA
AACGCGAAATGGTGATGGAACCGTAAGTCTCGAAAACAAGAGTGATGCTC
GGGAAGAAGGAACGGTTCAAACTGCTCCTGCGGACCAAAATTCGGATCTA
GGTGTGGAACAGGAGGAGCAGCAAAGCGCGGAACTACCAAGGCACCCTAT
GAATCGGAACATTGTTGAACTGCAAATTCCCGGTGGAACTGGAGTTCTTT
CTATCAAAACTGTTAAAGACTACTATCGAAAGTTGGCAAAGGCGTATTTG
GAAACCTTCAGTGCCGGAATACACCGCCAGATGTTCTTCGATATCTTGCG
AAGAAGAACCTATTCTCTAACACCGCCAGGAGCGAACAAAGGCGTTCAAA
CAATCTTGTTTCAAATTATTGATGGTAGGGTGTATATGATGGATCCATAC
GAAGTTCCGAGAAACTCAAAGCCGTTTTACAGGACGCGAATCAATGAGGT
CATATGGCTACTTTCCAGACTTGCTGAAGAAGGGCGTATAAAGAACACAG
AGTTTCTCATGGCTATCCATGACTGCGTTCAAACTGTCAACAAGGAACAC
ACTTACCGAGGAGCGCACTACTCTGAGAGCAACCCTGCGTTCACAATTGT
ATCCTGCAATTTCTCTAATAACGTTCCTTTCCCCATGTGGGAAGGAAGCA
AGCACAGAGACGGAGGGTTTTCAGGCTGGGATGAGACCATGAGGCAGTAC
GCAGTTGATGACATTCCGTGGGAACAGAAGCAAGATAGGGCGGTGTTCAG
GGGTGGGAATAGACCGAGCATGTACTTCCAAAACAAGTCAGACGCAGATT
TGCATTGCCAAGATGTTGGGAGAACGAGACTTCTGTACTTGTCCCAACAG
CAACCAGACGTTCTCGATGTCTCCGTCGGCGGTACTTGCGCAGGAGTGCA
CACCCAGTTGCAACGTCTGGAACCAAAGGAACACCACAGATACAAGTACA
TTTTGTACGCGGAAGGCAACTGCATGTGGGCTGACCGTACTAGGCATCAG
GTTTTTGGACCATCACTCATGATCAAACAAGAAACTCCGTGCGGACAATT
CTTCGAACCACTTCTTCGACCAAACACGCACTATGTCCCGACGGATTTCT
TCTTTACAGATACCATTGAAAAGATCTCCTGGGCTCGTCAGAACGAAGGT
GCAGTCCGGGAAATGATCAAGAACGCGAATGAGTTTGGGCACAATTTCCT
ATCTTTGAAAGCAATTGAATCGTATGTGGAGGTTTTACTTGAAGAGTATA
CTTCATTGTTAGTGGAGCCTGAGATTAAGCTAGAAAATGGAGCTATTGAT
GTAACGCACAGGCAGGTATGA