Gcaud9176.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9176.t1
Unique NameGcaud9176.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length724
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_526_length_22991_cov_4.374716contigNODE_526_length_22991_cov_4.374716:20106..22277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMI157CT
Preferred nameYME1
PFAMsAAA,Peptidase_M41
Max annot lvl2759|Eukaryota
KEGG koko:K08955,ko:K17796
KEGG TC3.A.8.1
KEGG Pathwayko04139,map04139
GOsGO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005886,GO:0006457,GO:0006508,GO:0006515,GO:0006605,GO:0006626,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0009507,GO:0009526,GO:0009536,GO:0009888,GO:0009941,GO:0009987,GO:0010073,GO:0010467,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017038,GO:0017111,GO:0019538,GO:0019866,GO:0030150,GO:0030163,GO:0031090,GO:0031942,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035694,GO:0042623,GO:0042802,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045041,GO:0045184,GO:0046907,GO:0048507,GO:0048856,GO:0051179,GO:0051234,GO:0051603,GO:0051604,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070011,GO:0070585,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0098796,GO:0098798,GO:0098800,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1990542
Evalue2.74e-234
EggNOG OGsCOG0465@1|root,KOG0734@2759|Eukaryota
DescriptionATP-dependent peptidase activity
COG categoryO
BRITEko00000,ko00001,ko01000,ko01002,ko02000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9176Gcaud9176Gracilaria caudata M_176_S67 malegeneNODE_526_length_22991_cov_4.374716 20106..22277 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9176.t1.stop1Gcaud9176.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_526_length_22991_cov_4.374716 20106..20108 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9176.t1.CDS1Gcaud9176.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_526_length_22991_cov_4.374716 20106..22277 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9176.t1.exon1Gcaud9176.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_526_length_22991_cov_4.374716 20106..22277 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9176.t1.start1Gcaud9176.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_526_length_22991_cov_4.374716 22275..22277 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9176.t1Gcaud9176.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_526_length_22991_cov_4.374716 20106..22277 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9176.t1 ID=Gcaud9176.t1|Name=Gcaud9176.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=724bp
MASSASIALRTQLRSPRPRPLYNSLNPNVAQRIRATHVQQRRRWTLLPDS
QERRLKRLLEEANSRAHDPEIQAVYLRALGKTKPQEVVRRVELGQYAAGD
NVIREYVKALVRTGAIDRVNLPKLIDSVASNTARASVGATSSGMSGLSGT
APTTGAVSGTAGTSTVAGLAPGVASPLEAGGAATAAGTATAPIHVTLAEP
SMLSQLWRAVRVLGTTFLVLGFLGVMMEERGMSRGMGINLDKAPEPESGD
ATTFEDVKGCDEAKAELEEIVQFLRQPYAFTRLGGKLPKGVLLMGPPGTG
KTLLARAIAGEAKRPFFYASGSEFEEMFVGVGAKRVRELFAAAKQHAPCI
IFIDEIDAIGGKRNPKDQRFLTMTLNQFLVEMDGFQSSEGIVVIGATNFP
ESLDKALIRPGRFDRHVVVPIPDIRGRAQILDAHTKKIPLEEDVDLEIIA
RGTPGFSGAELANLVNMAALKAAVEDFAAVTMSHLEFAKDKIIMGAERRS
AALSEDTRRMTAYHEGGHALCCLYTKEAFPVHKATIMPRGQALGLVAQLP
AKDMTSMTKAQMLAKVDVCMGGRAAEAMIYGEENVSSGASSDFEQATQMA
EAMVTRYGMSEKLGMVVYDKERESGETRALIESEVKRILDDAYARVSKLL
RNKEKELHRLAEALLKYESLTGEQVRLAVKGELSEVMMRMVENERMSSER
TKEEHEAGAVLDARGAVGGDSGV*
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spliced messenger RNA

>Gcaud9176.t1 ID=Gcaud9176.t1|Name=Gcaud9176.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2172bp|location=Sequence derived from alignment at NODE_526_length_22991_cov_4.374716:20106..22277- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCTTCGGCATCAATTGCGCTCAGAACACAATTACGCAGCCCACG
ACCAAGACCTCTTTACAACTCCCTGAATCCCAATGTTGCGCAACGCATAC
GTGCCACACATGTTCAGCAGCGAAGGCGATGGACACTGCTCCCAGACTCC
CAAGAACGGCGGCTAAAACGTTTATTGGAAGAAGCGAACAGTCGCGCTCA
CGACCCTGAGATTCAAGCTGTCTATCTGCGCGCATTGGGAAAAACAAAGC
CTCAAGAAGTAGTTCGTCGAGTGGAGTTGGGGCAGTATGCTGCGGGAGAC
AACGTCATAAGAGAGTATGTGAAGGCTCTGGTAAGAACTGGTGCCATCGA
CAGGGTGAATCTACCGAAGCTGATTGACTCTGTTGCTAGTAACACTGCAC
GTGCGAGTGTTGGCGCCACTTCATCCGGTATGAGCGGTCTGAGTGGCACT
GCGCCAACAACGGGCGCTGTGAGCGGCACTGCGGGGACTAGCACCGTGGC
TGGCCTAGCCCCAGGGGTGGCGTCTCCGTTGGAGGCAGGTGGAGCTGCAA
CAGCTGCAGGCACAGCCACAGCGCCTATACATGTCACGCTAGCAGAACCG
TCCATGCTCTCTCAGCTTTGGCGTGCGGTGCGTGTTTTGGGGACGACATT
CTTAGTGCTGGGATTCCTTGGAGTCATGATGGAGGAGCGTGGAATGTCGC
GCGGAATGGGCATTAACCTCGACAAAGCGCCGGAGCCAGAATCCGGCGAC
GCAACAACGTTTGAGGACGTGAAGGGGTGTGATGAGGCAAAGGCGGAACT
TGAAGAGATTGTTCAGTTCTTGCGTCAGCCGTATGCGTTTACGCGATTGG
GAGGCAAATTGCCAAAGGGCGTGCTGCTCATGGGACCACCCGGCACCGGA
AAGACTCTACTTGCGCGGGCTATTGCAGGGGAGGCAAAACGGCCTTTTTT
CTACGCAAGCGGATCTGAGTTTGAGGAGATGTTTGTTGGGGTGGGTGCGA
AGCGAGTGAGGGAGTTGTTTGCAGCAGCCAAACAACATGCACCGTGTATA
ATCTTCATCGATGAGATCGATGCAATAGGGGGGAAGAGAAATCCAAAAGA
CCAACGCTTTCTAACAATGACTCTGAATCAATTCTTAGTGGAGATGGACG
GCTTTCAATCGAGTGAAGGCATTGTGGTGATCGGTGCCACAAACTTTCCG
GAGAGCCTCGACAAGGCACTCATCCGACCGGGGCGCTTCGACAGGCACGT
AGTGGTGCCTATTCCCGATATTCGCGGCAGGGCACAAATCCTTGACGCAC
ACACAAAGAAGATACCTTTAGAAGAAGACGTGGATCTAGAAATCATTGCG
CGAGGAACTCCTGGATTCTCCGGGGCGGAGTTGGCGAACTTGGTGAATAT
GGCGGCGCTAAAAGCGGCTGTGGAGGACTTTGCGGCAGTAACAATGAGTC
ACCTGGAATTCGCTAAGGACAAGATCATCATGGGTGCGGAAAGAAGGTCC
GCTGCGCTAAGTGAGGACACAAGACGGATGACTGCGTATCACGAGGGGGG
ACATGCACTGTGCTGTCTGTATACAAAGGAAGCATTCCCAGTACACAAGG
CGACCATCATGCCTAGGGGACAGGCGTTGGGTCTGGTGGCGCAACTACCC
GCAAAGGACATGACGTCCATGACAAAGGCGCAGATGCTCGCTAAGGTTGA
TGTGTGTATGGGCGGTCGCGCTGCTGAGGCGATGATCTACGGGGAGGAAA
ACGTGTCGAGTGGCGCATCATCAGACTTTGAACAGGCGACGCAAATGGCC
GAGGCGATGGTGACGCGGTACGGAATGTCGGAGAAACTGGGGATGGTGGT
GTACGACAAGGAGCGAGAAAGCGGCGAGACCCGAGCGCTGATCGAGAGCG
AGGTGAAGCGGATCTTGGACGACGCGTACGCGAGAGTGAGCAAGCTGCTA
CGAAACAAGGAGAAGGAGTTGCATCGACTGGCGGAGGCGCTGCTCAAGTA
CGAGAGCCTGACGGGCGAACAGGTGAGGCTGGCGGTGAAGGGGGAATTGT
CCGAGGTGATGATGAGAATGGTGGAGAACGAGCGAATGAGCTCGGAGCGA
ACGAAGGAGGAGCACGAGGCCGGGGCGGTGTTGGACGCGCGCGGTGCGGT
GGGAGGCGATAGCGGAGTGTAG
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protein sequence of Gcaud9176.t1

>Gcaud9176.t1 ID=Gcaud9176.t1|Name=Gcaud9176.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=724bp
MASSASIALRTQLRSPRPRPLYNSLNPNVAQRIRATHVQQRRRWTLLPDS
QERRLKRLLEEANSRAHDPEIQAVYLRALGKTKPQEVVRRVELGQYAAGD
NVIREYVKALVRTGAIDRVNLPKLIDSVASNTARASVGATSSGMSGLSGT
APTTGAVSGTAGTSTVAGLAPGVASPLEAGGAATAAGTATAPIHVTLAEP
SMLSQLWRAVRVLGTTFLVLGFLGVMMEERGMSRGMGINLDKAPEPESGD
ATTFEDVKGCDEAKAELEEIVQFLRQPYAFTRLGGKLPKGVLLMGPPGTG
KTLLARAIAGEAKRPFFYASGSEFEEMFVGVGAKRVRELFAAAKQHAPCI
IFIDEIDAIGGKRNPKDQRFLTMTLNQFLVEMDGFQSSEGIVVIGATNFP
ESLDKALIRPGRFDRHVVVPIPDIRGRAQILDAHTKKIPLEEDVDLEIIA
RGTPGFSGAELANLVNMAALKAAVEDFAAVTMSHLEFAKDKIIMGAERRS
AALSEDTRRMTAYHEGGHALCCLYTKEAFPVHKATIMPRGQALGLVAQLP
AKDMTSMTKAQMLAKVDVCMGGRAAEAMIYGEENVSSGASSDFEQATQMA
EAMVTRYGMSEKLGMVVYDKERESGETRALIESEVKRILDDAYARVSKLL
RNKEKELHRLAEALLKYESLTGEQVRLAVKGELSEVMMRMVENERMSSER
TKEEHEAGAVLDARGAVGGDSGV*
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mRNA from alignment at NODE_526_length_22991_cov_4.374716:20106..22277-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9176.t1 ID=Gcaud9176.t1|Name=Gcaud9176.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2172bp|location=Sequence derived from alignment at NODE_526_length_22991_cov_4.374716:20106..22277- (Gracilaria caudata M_176_S67 male)
ATGGCGTCTTCGGCATCAATTGCGCTCAGAACACAATTACGCAGCCCACG ACCAAGACCTCTTTACAACTCCCTGAATCCCAATGTTGCGCAACGCATAC GTGCCACACATGTTCAGCAGCGAAGGCGATGGACACTGCTCCCAGACTCC CAAGAACGGCGGCTAAAACGTTTATTGGAAGAAGCGAACAGTCGCGCTCA CGACCCTGAGATTCAAGCTGTCTATCTGCGCGCATTGGGAAAAACAAAGC CTCAAGAAGTAGTTCGTCGAGTGGAGTTGGGGCAGTATGCTGCGGGAGAC AACGTCATAAGAGAGTATGTGAAGGCTCTGGTAAGAACTGGTGCCATCGA CAGGGTGAATCTACCGAAGCTGATTGACTCTGTTGCTAGTAACACTGCAC GTGCGAGTGTTGGCGCCACTTCATCCGGTATGAGCGGTCTGAGTGGCACT GCGCCAACAACGGGCGCTGTGAGCGGCACTGCGGGGACTAGCACCGTGGC TGGCCTAGCCCCAGGGGTGGCGTCTCCGTTGGAGGCAGGTGGAGCTGCAA CAGCTGCAGGCACAGCCACAGCGCCTATACATGTCACGCTAGCAGAACCG TCCATGCTCTCTCAGCTTTGGCGTGCGGTGCGTGTTTTGGGGACGACATT CTTAGTGCTGGGATTCCTTGGAGTCATGATGGAGGAGCGTGGAATGTCGC GCGGAATGGGCATTAACCTCGACAAAGCGCCGGAGCCAGAATCCGGCGAC GCAACAACGTTTGAGGACGTGAAGGGGTGTGATGAGGCAAAGGCGGAACT TGAAGAGATTGTTCAGTTCTTGCGTCAGCCGTATGCGTTTACGCGATTGG GAGGCAAATTGCCAAAGGGCGTGCTGCTCATGGGACCACCCGGCACCGGA AAGACTCTACTTGCGCGGGCTATTGCAGGGGAGGCAAAACGGCCTTTTTT CTACGCAAGCGGATCTGAGTTTGAGGAGATGTTTGTTGGGGTGGGTGCGA AGCGAGTGAGGGAGTTGTTTGCAGCAGCCAAACAACATGCACCGTGTATA ATCTTCATCGATGAGATCGATGCAATAGGGGGGAAGAGAAATCCAAAAGA CCAACGCTTTCTAACAATGACTCTGAATCAATTCTTAGTGGAGATGGACG GCTTTCAATCGAGTGAAGGCATTGTGGTGATCGGTGCCACAAACTTTCCG GAGAGCCTCGACAAGGCACTCATCCGACCGGGGCGCTTCGACAGGCACGT AGTGGTGCCTATTCCCGATATTCGCGGCAGGGCACAAATCCTTGACGCAC ACACAAAGAAGATACCTTTAGAAGAAGACGTGGATCTAGAAATCATTGCG CGAGGAACTCCTGGATTCTCCGGGGCGGAGTTGGCGAACTTGGTGAATAT GGCGGCGCTAAAAGCGGCTGTGGAGGACTTTGCGGCAGTAACAATGAGTC ACCTGGAATTCGCTAAGGACAAGATCATCATGGGTGCGGAAAGAAGGTCC GCTGCGCTAAGTGAGGACACAAGACGGATGACTGCGTATCACGAGGGGGG ACATGCACTGTGCTGTCTGTATACAAAGGAAGCATTCCCAGTACACAAGG CGACCATCATGCCTAGGGGACAGGCGTTGGGTCTGGTGGCGCAACTACCC GCAAAGGACATGACGTCCATGACAAAGGCGCAGATGCTCGCTAAGGTTGA TGTGTGTATGGGCGGTCGCGCTGCTGAGGCGATGATCTACGGGGAGGAAA ACGTGTCGAGTGGCGCATCATCAGACTTTGAACAGGCGACGCAAATGGCC GAGGCGATGGTGACGCGGTACGGAATGTCGGAGAAACTGGGGATGGTGGT GTACGACAAGGAGCGAGAAAGCGGCGAGACCCGAGCGCTGATCGAGAGCG AGGTGAAGCGGATCTTGGACGACGCGTACGCGAGAGTGAGCAAGCTGCTA CGAAACAAGGAGAAGGAGTTGCATCGACTGGCGGAGGCGCTGCTCAAGTA CGAGAGCCTGACGGGCGAACAGGTGAGGCTGGCGGTGAAGGGGGAATTGT CCGAGGTGATGATGAGAATGGTGGAGAACGAGCGAATGAGCTCGGAGCGA ACGAAGGAGGAGCACGAGGCCGGGGCGGTGTTGGACGCGCGCGGTGCGGT GGGAGGCGATAGCGGAGTGTAG
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Coding sequence (CDS) from alignment at NODE_526_length_22991_cov_4.374716:20106..22277-

>Gcaud9176.t1 ID=Gcaud9176.t1|Name=Gcaud9176.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2172bp|location=Sequence derived from alignment at NODE_526_length_22991_cov_4.374716:20106..22277- (Gracilaria caudata M_176_S67 male)
ATGGCGTCTTCGGCATCAATTGCGCTCAGAACACAATTACGCAGCCCACG
ACCAAGACCTCTTTACAACTCCCTGAATCCCAATGTTGCGCAACGCATAC
GTGCCACACATGTTCAGCAGCGAAGGCGATGGACACTGCTCCCAGACTCC
CAAGAACGGCGGCTAAAACGTTTATTGGAAGAAGCGAACAGTCGCGCTCA
CGACCCTGAGATTCAAGCTGTCTATCTGCGCGCATTGGGAAAAACAAAGC
CTCAAGAAGTAGTTCGTCGAGTGGAGTTGGGGCAGTATGCTGCGGGAGAC
AACGTCATAAGAGAGTATGTGAAGGCTCTGGTAAGAACTGGTGCCATCGA
CAGGGTGAATCTACCGAAGCTGATTGACTCTGTTGCTAGTAACACTGCAC
GTGCGAGTGTTGGCGCCACTTCATCCGGTATGAGCGGTCTGAGTGGCACT
GCGCCAACAACGGGCGCTGTGAGCGGCACTGCGGGGACTAGCACCGTGGC
TGGCCTAGCCCCAGGGGTGGCGTCTCCGTTGGAGGCAGGTGGAGCTGCAA
CAGCTGCAGGCACAGCCACAGCGCCTATACATGTCACGCTAGCAGAACCG
TCCATGCTCTCTCAGCTTTGGCGTGCGGTGCGTGTTTTGGGGACGACATT
CTTAGTGCTGGGATTCCTTGGAGTCATGATGGAGGAGCGTGGAATGTCGC
GCGGAATGGGCATTAACCTCGACAAAGCGCCGGAGCCAGAATCCGGCGAC
GCAACAACGTTTGAGGACGTGAAGGGGTGTGATGAGGCAAAGGCGGAACT
TGAAGAGATTGTTCAGTTCTTGCGTCAGCCGTATGCGTTTACGCGATTGG
GAGGCAAATTGCCAAAGGGCGTGCTGCTCATGGGACCACCCGGCACCGGA
AAGACTCTACTTGCGCGGGCTATTGCAGGGGAGGCAAAACGGCCTTTTTT
CTACGCAAGCGGATCTGAGTTTGAGGAGATGTTTGTTGGGGTGGGTGCGA
AGCGAGTGAGGGAGTTGTTTGCAGCAGCCAAACAACATGCACCGTGTATA
ATCTTCATCGATGAGATCGATGCAATAGGGGGGAAGAGAAATCCAAAAGA
CCAACGCTTTCTAACAATGACTCTGAATCAATTCTTAGTGGAGATGGACG
GCTTTCAATCGAGTGAAGGCATTGTGGTGATCGGTGCCACAAACTTTCCG
GAGAGCCTCGACAAGGCACTCATCCGACCGGGGCGCTTCGACAGGCACGT
AGTGGTGCCTATTCCCGATATTCGCGGCAGGGCACAAATCCTTGACGCAC
ACACAAAGAAGATACCTTTAGAAGAAGACGTGGATCTAGAAATCATTGCG
CGAGGAACTCCTGGATTCTCCGGGGCGGAGTTGGCGAACTTGGTGAATAT
GGCGGCGCTAAAAGCGGCTGTGGAGGACTTTGCGGCAGTAACAATGAGTC
ACCTGGAATTCGCTAAGGACAAGATCATCATGGGTGCGGAAAGAAGGTCC
GCTGCGCTAAGTGAGGACACAAGACGGATGACTGCGTATCACGAGGGGGG
ACATGCACTGTGCTGTCTGTATACAAAGGAAGCATTCCCAGTACACAAGG
CGACCATCATGCCTAGGGGACAGGCGTTGGGTCTGGTGGCGCAACTACCC
GCAAAGGACATGACGTCCATGACAAAGGCGCAGATGCTCGCTAAGGTTGA
TGTGTGTATGGGCGGTCGCGCTGCTGAGGCGATGATCTACGGGGAGGAAA
ACGTGTCGAGTGGCGCATCATCAGACTTTGAACAGGCGACGCAAATGGCC
GAGGCGATGGTGACGCGGTACGGAATGTCGGAGAAACTGGGGATGGTGGT
GTACGACAAGGAGCGAGAAAGCGGCGAGACCCGAGCGCTGATCGAGAGCG
AGGTGAAGCGGATCTTGGACGACGCGTACGCGAGAGTGAGCAAGCTGCTA
CGAAACAAGGAGAAGGAGTTGCATCGACTGGCGGAGGCGCTGCTCAAGTA
CGAGAGCCTGACGGGCGAACAGGTGAGGCTGGCGGTGAAGGGGGAATTGT
CCGAGGTGATGATGAGAATGGTGGAGAACGAGCGAATGAGCTCGGAGCGA
ACGAAGGAGGAGCACGAGGCCGGGGCGGTGTTGGACGCGCGCGGTGCGGT
GGGAGGCGATAGCGGAGTGTAG
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