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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 45157.CMI157CT |
| Preferred name | YME1 |
| PFAMs | AAA,Peptidase_M41 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K08955,ko:K17796 |
| KEGG TC | 3.A.8.1 |
| KEGG Pathway | ko04139,map04139 |
| GOs | GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005886,GO:0006457,GO:0006508,GO:0006515,GO:0006605,GO:0006626,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0009507,GO:0009526,GO:0009536,GO:0009888,GO:0009941,GO:0009987,GO:0010073,GO:0010467,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017038,GO:0017111,GO:0019538,GO:0019866,GO:0030150,GO:0030163,GO:0031090,GO:0031942,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035694,GO:0042623,GO:0042802,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045041,GO:0045184,GO:0046907,GO:0048507,GO:0048856,GO:0051179,GO:0051234,GO:0051603,GO:0051604,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070011,GO:0070585,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0098796,GO:0098798,GO:0098800,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1990542 |
| Evalue | 2.74e-234 |
| EggNOG OGs | COG0465@1|root,KOG0734@2759|Eukaryota |
| Description | ATP-dependent peptidase activity |
| COG category | O |
| BRITE | ko00000,ko00001,ko01000,ko01002,ko02000,ko03029 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud9176.t1.stop1 | Gcaud9176.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_526_length_22991_cov_4.374716 20106..20108 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud9176.t1.exon1 | Gcaud9176.t1.exon1 | Gracilaria caudata M_176_S67 male | exon | NODE_526_length_22991_cov_4.374716 20106..22277 - |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud9176.t1.start1 | Gcaud9176.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_526_length_22991_cov_4.374716 22275..22277 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud9176.t1 ID=Gcaud9176.t1|Name=Gcaud9176.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=724bp MASSASIALRTQLRSPRPRPLYNSLNPNVAQRIRATHVQQRRRWTLLPDS QERRLKRLLEEANSRAHDPEIQAVYLRALGKTKPQEVVRRVELGQYAAGD NVIREYVKALVRTGAIDRVNLPKLIDSVASNTARASVGATSSGMSGLSGT APTTGAVSGTAGTSTVAGLAPGVASPLEAGGAATAAGTATAPIHVTLAEP SMLSQLWRAVRVLGTTFLVLGFLGVMMEERGMSRGMGINLDKAPEPESGD ATTFEDVKGCDEAKAELEEIVQFLRQPYAFTRLGGKLPKGVLLMGPPGTG KTLLARAIAGEAKRPFFYASGSEFEEMFVGVGAKRVRELFAAAKQHAPCI IFIDEIDAIGGKRNPKDQRFLTMTLNQFLVEMDGFQSSEGIVVIGATNFP ESLDKALIRPGRFDRHVVVPIPDIRGRAQILDAHTKKIPLEEDVDLEIIA RGTPGFSGAELANLVNMAALKAAVEDFAAVTMSHLEFAKDKIIMGAERRS AALSEDTRRMTAYHEGGHALCCLYTKEAFPVHKATIMPRGQALGLVAQLP AKDMTSMTKAQMLAKVDVCMGGRAAEAMIYGEENVSSGASSDFEQATQMA EAMVTRYGMSEKLGMVVYDKERESGETRALIESEVKRILDDAYARVSKLL RNKEKELHRLAEALLKYESLTGEQVRLAVKGELSEVMMRMVENERMSSER TKEEHEAGAVLDARGAVGGDSGV* back to topspliced messenger RNA >Gcaud9176.t1 ID=Gcaud9176.t1|Name=Gcaud9176.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2172bp|location=Sequence derived from alignment at NODE_526_length_22991_cov_4.374716:20106..22277- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGCGTCTTCGGCATCAATTGCGCTCAGAACACAATTACGCAGCCCACG ACCAAGACCTCTTTACAACTCCCTGAATCCCAATGTTGCGCAACGCATAC GTGCCACACATGTTCAGCAGCGAAGGCGATGGACACTGCTCCCAGACTCC CAAGAACGGCGGCTAAAACGTTTATTGGAAGAAGCGAACAGTCGCGCTCA CGACCCTGAGATTCAAGCTGTCTATCTGCGCGCATTGGGAAAAACAAAGC CTCAAGAAGTAGTTCGTCGAGTGGAGTTGGGGCAGTATGCTGCGGGAGAC AACGTCATAAGAGAGTATGTGAAGGCTCTGGTAAGAACTGGTGCCATCGA CAGGGTGAATCTACCGAAGCTGATTGACTCTGTTGCTAGTAACACTGCAC GTGCGAGTGTTGGCGCCACTTCATCCGGTATGAGCGGTCTGAGTGGCACT GCGCCAACAACGGGCGCTGTGAGCGGCACTGCGGGGACTAGCACCGTGGC TGGCCTAGCCCCAGGGGTGGCGTCTCCGTTGGAGGCAGGTGGAGCTGCAA CAGCTGCAGGCACAGCCACAGCGCCTATACATGTCACGCTAGCAGAACCG TCCATGCTCTCTCAGCTTTGGCGTGCGGTGCGTGTTTTGGGGACGACATT CTTAGTGCTGGGATTCCTTGGAGTCATGATGGAGGAGCGTGGAATGTCGC GCGGAATGGGCATTAACCTCGACAAAGCGCCGGAGCCAGAATCCGGCGAC GCAACAACGTTTGAGGACGTGAAGGGGTGTGATGAGGCAAAGGCGGAACT TGAAGAGATTGTTCAGTTCTTGCGTCAGCCGTATGCGTTTACGCGATTGG GAGGCAAATTGCCAAAGGGCGTGCTGCTCATGGGACCACCCGGCACCGGA AAGACTCTACTTGCGCGGGCTATTGCAGGGGAGGCAAAACGGCCTTTTTT CTACGCAAGCGGATCTGAGTTTGAGGAGATGTTTGTTGGGGTGGGTGCGA AGCGAGTGAGGGAGTTGTTTGCAGCAGCCAAACAACATGCACCGTGTATA ATCTTCATCGATGAGATCGATGCAATAGGGGGGAAGAGAAATCCAAAAGA CCAACGCTTTCTAACAATGACTCTGAATCAATTCTTAGTGGAGATGGACG GCTTTCAATCGAGTGAAGGCATTGTGGTGATCGGTGCCACAAACTTTCCG GAGAGCCTCGACAAGGCACTCATCCGACCGGGGCGCTTCGACAGGCACGT AGTGGTGCCTATTCCCGATATTCGCGGCAGGGCACAAATCCTTGACGCAC ACACAAAGAAGATACCTTTAGAAGAAGACGTGGATCTAGAAATCATTGCG CGAGGAACTCCTGGATTCTCCGGGGCGGAGTTGGCGAACTTGGTGAATAT GGCGGCGCTAAAAGCGGCTGTGGAGGACTTTGCGGCAGTAACAATGAGTC ACCTGGAATTCGCTAAGGACAAGATCATCATGGGTGCGGAAAGAAGGTCC GCTGCGCTAAGTGAGGACACAAGACGGATGACTGCGTATCACGAGGGGGG ACATGCACTGTGCTGTCTGTATACAAAGGAAGCATTCCCAGTACACAAGG CGACCATCATGCCTAGGGGACAGGCGTTGGGTCTGGTGGCGCAACTACCC GCAAAGGACATGACGTCCATGACAAAGGCGCAGATGCTCGCTAAGGTTGA TGTGTGTATGGGCGGTCGCGCTGCTGAGGCGATGATCTACGGGGAGGAAA ACGTGTCGAGTGGCGCATCATCAGACTTTGAACAGGCGACGCAAATGGCC GAGGCGATGGTGACGCGGTACGGAATGTCGGAGAAACTGGGGATGGTGGT GTACGACAAGGAGCGAGAAAGCGGCGAGACCCGAGCGCTGATCGAGAGCG AGGTGAAGCGGATCTTGGACGACGCGTACGCGAGAGTGAGCAAGCTGCTA CGAAACAAGGAGAAGGAGTTGCATCGACTGGCGGAGGCGCTGCTCAAGTA CGAGAGCCTGACGGGCGAACAGGTGAGGCTGGCGGTGAAGGGGGAATTGT CCGAGGTGATGATGAGAATGGTGGAGAACGAGCGAATGAGCTCGGAGCGA ACGAAGGAGGAGCACGAGGCCGGGGCGGTGTTGGACGCGCGCGGTGCGGT GGGAGGCGATAGCGGAGTGTAG back to topprotein sequence of Gcaud9176.t1 >Gcaud9176.t1 ID=Gcaud9176.t1|Name=Gcaud9176.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=724bp
MASSASIALRTQLRSPRPRPLYNSLNPNVAQRIRATHVQQRRRWTLLPDS QERRLKRLLEEANSRAHDPEIQAVYLRALGKTKPQEVVRRVELGQYAAGD NVIREYVKALVRTGAIDRVNLPKLIDSVASNTARASVGATSSGMSGLSGT APTTGAVSGTAGTSTVAGLAPGVASPLEAGGAATAAGTATAPIHVTLAEP SMLSQLWRAVRVLGTTFLVLGFLGVMMEERGMSRGMGINLDKAPEPESGD ATTFEDVKGCDEAKAELEEIVQFLRQPYAFTRLGGKLPKGVLLMGPPGTG KTLLARAIAGEAKRPFFYASGSEFEEMFVGVGAKRVRELFAAAKQHAPCI IFIDEIDAIGGKRNPKDQRFLTMTLNQFLVEMDGFQSSEGIVVIGATNFP ESLDKALIRPGRFDRHVVVPIPDIRGRAQILDAHTKKIPLEEDVDLEIIA RGTPGFSGAELANLVNMAALKAAVEDFAAVTMSHLEFAKDKIIMGAERRS AALSEDTRRMTAYHEGGHALCCLYTKEAFPVHKATIMPRGQALGLVAQLP AKDMTSMTKAQMLAKVDVCMGGRAAEAMIYGEENVSSGASSDFEQATQMA EAMVTRYGMSEKLGMVVYDKERESGETRALIESEVKRILDDAYARVSKLL RNKEKELHRLAEALLKYESLTGEQVRLAVKGELSEVMMRMVENERMSSER TKEEHEAGAVLDARGAVGGDSGV* back to topmRNA from alignment at NODE_526_length_22991_cov_4.374716:20106..22277- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud9176.t1 ID=Gcaud9176.t1|Name=Gcaud9176.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2172bp|location=Sequence derived from alignment at NODE_526_length_22991_cov_4.374716:20106..22277- (Gracilaria caudata M_176_S67 male) ATGGCGTCTTCGGCATCAATTGCGCTCAGAACACAATTACGCAGCCCACG
ACCAAGACCTCTTTACAACTCCCTGAATCCCAATGTTGCGCAACGCATAC
GTGCCACACATGTTCAGCAGCGAAGGCGATGGACACTGCTCCCAGACTCC
CAAGAACGGCGGCTAAAACGTTTATTGGAAGAAGCGAACAGTCGCGCTCA
CGACCCTGAGATTCAAGCTGTCTATCTGCGCGCATTGGGAAAAACAAAGC
CTCAAGAAGTAGTTCGTCGAGTGGAGTTGGGGCAGTATGCTGCGGGAGAC
AACGTCATAAGAGAGTATGTGAAGGCTCTGGTAAGAACTGGTGCCATCGA
CAGGGTGAATCTACCGAAGCTGATTGACTCTGTTGCTAGTAACACTGCAC
GTGCGAGTGTTGGCGCCACTTCATCCGGTATGAGCGGTCTGAGTGGCACT
GCGCCAACAACGGGCGCTGTGAGCGGCACTGCGGGGACTAGCACCGTGGC
TGGCCTAGCCCCAGGGGTGGCGTCTCCGTTGGAGGCAGGTGGAGCTGCAA
CAGCTGCAGGCACAGCCACAGCGCCTATACATGTCACGCTAGCAGAACCG
TCCATGCTCTCTCAGCTTTGGCGTGCGGTGCGTGTTTTGGGGACGACATT
CTTAGTGCTGGGATTCCTTGGAGTCATGATGGAGGAGCGTGGAATGTCGC
GCGGAATGGGCATTAACCTCGACAAAGCGCCGGAGCCAGAATCCGGCGAC
GCAACAACGTTTGAGGACGTGAAGGGGTGTGATGAGGCAAAGGCGGAACT
TGAAGAGATTGTTCAGTTCTTGCGTCAGCCGTATGCGTTTACGCGATTGG
GAGGCAAATTGCCAAAGGGCGTGCTGCTCATGGGACCACCCGGCACCGGA
AAGACTCTACTTGCGCGGGCTATTGCAGGGGAGGCAAAACGGCCTTTTTT
CTACGCAAGCGGATCTGAGTTTGAGGAGATGTTTGTTGGGGTGGGTGCGA
AGCGAGTGAGGGAGTTGTTTGCAGCAGCCAAACAACATGCACCGTGTATA
ATCTTCATCGATGAGATCGATGCAATAGGGGGGAAGAGAAATCCAAAAGA
CCAACGCTTTCTAACAATGACTCTGAATCAATTCTTAGTGGAGATGGACG
GCTTTCAATCGAGTGAAGGCATTGTGGTGATCGGTGCCACAAACTTTCCG
GAGAGCCTCGACAAGGCACTCATCCGACCGGGGCGCTTCGACAGGCACGT
AGTGGTGCCTATTCCCGATATTCGCGGCAGGGCACAAATCCTTGACGCAC
ACACAAAGAAGATACCTTTAGAAGAAGACGTGGATCTAGAAATCATTGCG
CGAGGAACTCCTGGATTCTCCGGGGCGGAGTTGGCGAACTTGGTGAATAT
GGCGGCGCTAAAAGCGGCTGTGGAGGACTTTGCGGCAGTAACAATGAGTC
ACCTGGAATTCGCTAAGGACAAGATCATCATGGGTGCGGAAAGAAGGTCC
GCTGCGCTAAGTGAGGACACAAGACGGATGACTGCGTATCACGAGGGGGG
ACATGCACTGTGCTGTCTGTATACAAAGGAAGCATTCCCAGTACACAAGG
CGACCATCATGCCTAGGGGACAGGCGTTGGGTCTGGTGGCGCAACTACCC
GCAAAGGACATGACGTCCATGACAAAGGCGCAGATGCTCGCTAAGGTTGA
TGTGTGTATGGGCGGTCGCGCTGCTGAGGCGATGATCTACGGGGAGGAAA
ACGTGTCGAGTGGCGCATCATCAGACTTTGAACAGGCGACGCAAATGGCC
GAGGCGATGGTGACGCGGTACGGAATGTCGGAGAAACTGGGGATGGTGGT
GTACGACAAGGAGCGAGAAAGCGGCGAGACCCGAGCGCTGATCGAGAGCG
AGGTGAAGCGGATCTTGGACGACGCGTACGCGAGAGTGAGCAAGCTGCTA
CGAAACAAGGAGAAGGAGTTGCATCGACTGGCGGAGGCGCTGCTCAAGTA
CGAGAGCCTGACGGGCGAACAGGTGAGGCTGGCGGTGAAGGGGGAATTGT
CCGAGGTGATGATGAGAATGGTGGAGAACGAGCGAATGAGCTCGGAGCGA
ACGAAGGAGGAGCACGAGGCCGGGGCGGTGTTGGACGCGCGCGGTGCGGT
GGGAGGCGATAGCGGAGTGTAG back to topCoding sequence (CDS) from alignment at NODE_526_length_22991_cov_4.374716:20106..22277- >Gcaud9176.t1 ID=Gcaud9176.t1|Name=Gcaud9176.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2172bp|location=Sequence derived from alignment at NODE_526_length_22991_cov_4.374716:20106..22277- (Gracilaria caudata M_176_S67 male) ATGGCGTCTTCGGCATCAATTGCGCTCAGAACACAATTACGCAGCCCACG ACCAAGACCTCTTTACAACTCCCTGAATCCCAATGTTGCGCAACGCATAC GTGCCACACATGTTCAGCAGCGAAGGCGATGGACACTGCTCCCAGACTCC CAAGAACGGCGGCTAAAACGTTTATTGGAAGAAGCGAACAGTCGCGCTCA CGACCCTGAGATTCAAGCTGTCTATCTGCGCGCATTGGGAAAAACAAAGC CTCAAGAAGTAGTTCGTCGAGTGGAGTTGGGGCAGTATGCTGCGGGAGAC AACGTCATAAGAGAGTATGTGAAGGCTCTGGTAAGAACTGGTGCCATCGA CAGGGTGAATCTACCGAAGCTGATTGACTCTGTTGCTAGTAACACTGCAC GTGCGAGTGTTGGCGCCACTTCATCCGGTATGAGCGGTCTGAGTGGCACT GCGCCAACAACGGGCGCTGTGAGCGGCACTGCGGGGACTAGCACCGTGGC TGGCCTAGCCCCAGGGGTGGCGTCTCCGTTGGAGGCAGGTGGAGCTGCAA CAGCTGCAGGCACAGCCACAGCGCCTATACATGTCACGCTAGCAGAACCG TCCATGCTCTCTCAGCTTTGGCGTGCGGTGCGTGTTTTGGGGACGACATT CTTAGTGCTGGGATTCCTTGGAGTCATGATGGAGGAGCGTGGAATGTCGC GCGGAATGGGCATTAACCTCGACAAAGCGCCGGAGCCAGAATCCGGCGAC GCAACAACGTTTGAGGACGTGAAGGGGTGTGATGAGGCAAAGGCGGAACT TGAAGAGATTGTTCAGTTCTTGCGTCAGCCGTATGCGTTTACGCGATTGG GAGGCAAATTGCCAAAGGGCGTGCTGCTCATGGGACCACCCGGCACCGGA AAGACTCTACTTGCGCGGGCTATTGCAGGGGAGGCAAAACGGCCTTTTTT CTACGCAAGCGGATCTGAGTTTGAGGAGATGTTTGTTGGGGTGGGTGCGA AGCGAGTGAGGGAGTTGTTTGCAGCAGCCAAACAACATGCACCGTGTATA ATCTTCATCGATGAGATCGATGCAATAGGGGGGAAGAGAAATCCAAAAGA CCAACGCTTTCTAACAATGACTCTGAATCAATTCTTAGTGGAGATGGACG GCTTTCAATCGAGTGAAGGCATTGTGGTGATCGGTGCCACAAACTTTCCG GAGAGCCTCGACAAGGCACTCATCCGACCGGGGCGCTTCGACAGGCACGT AGTGGTGCCTATTCCCGATATTCGCGGCAGGGCACAAATCCTTGACGCAC ACACAAAGAAGATACCTTTAGAAGAAGACGTGGATCTAGAAATCATTGCG CGAGGAACTCCTGGATTCTCCGGGGCGGAGTTGGCGAACTTGGTGAATAT GGCGGCGCTAAAAGCGGCTGTGGAGGACTTTGCGGCAGTAACAATGAGTC ACCTGGAATTCGCTAAGGACAAGATCATCATGGGTGCGGAAAGAAGGTCC GCTGCGCTAAGTGAGGACACAAGACGGATGACTGCGTATCACGAGGGGGG ACATGCACTGTGCTGTCTGTATACAAAGGAAGCATTCCCAGTACACAAGG CGACCATCATGCCTAGGGGACAGGCGTTGGGTCTGGTGGCGCAACTACCC GCAAAGGACATGACGTCCATGACAAAGGCGCAGATGCTCGCTAAGGTTGA TGTGTGTATGGGCGGTCGCGCTGCTGAGGCGATGATCTACGGGGAGGAAA ACGTGTCGAGTGGCGCATCATCAGACTTTGAACAGGCGACGCAAATGGCC GAGGCGATGGTGACGCGGTACGGAATGTCGGAGAAACTGGGGATGGTGGT GTACGACAAGGAGCGAGAAAGCGGCGAGACCCGAGCGCTGATCGAGAGCG AGGTGAAGCGGATCTTGGACGACGCGTACGCGAGAGTGAGCAAGCTGCTA CGAAACAAGGAGAAGGAGTTGCATCGACTGGCGGAGGCGCTGCTCAAGTA CGAGAGCCTGACGGGCGAACAGGTGAGGCTGGCGGTGAAGGGGGAATTGT CCGAGGTGATGATGAGAATGGTGGAGAACGAGCGAATGAGCTCGGAGCGA ACGAAGGAGGAGCACGAGGCCGGGGCGGTGTTGGACGCGCGCGGTGCGGT GGGAGGCGATAGCGGAGTGTAG back to top
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