Gcaud7574.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7574.t1
Unique NameGcaud7574.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length186
Homology
BLAST of Gcaud7574.t1 vs. uniprot
Match: A0A2V3IZ75_9FLOR (Ribosomal RNA large subunit methyltransferase H n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ75_9FLOR)

HSP 1 Score: 200 bits (509), Expect = 1.800e-62
Identity = 110/180 (61.11%), Postives = 125/180 (69.44%), Query Frame = 0
Query:    6 GSFLRNRFGSACQNAGGFQIQGHATKIAIKAKLKVNLITIGKKSGKDAVFDALVAEYAKRMSREISMLEKSVKRESAAALVQELAQRESVMLMDEKGEMPRDSLHFSEMVFAALEEGGSRLSIVVGDADGLPLDLSAIKSPRIRKVSLSPLTFTHKMVRLFIYEQLYRATEIRKNSKYHK 185
            GSF+RN+    C      +   HA      AKLKV LITIGK+SGKDAVFD LVAEY KRMS  I                      E+VMLMDE G MPRDS+HFSEM+FAALE GGSRLS++VGDADGLPL +  +++ R++KVSLSPLTFTHKM RLFIYEQLYRATEIR NSKYHK
Sbjct:   15 GSFVRNKL---CTTKEALKPVRHAKSATFHAKLKVQLITIGKRSGKDAVFDPLVAEYTKRMSNVIXXXXXXXXXXXXXXXXXXXXXXEAVMLMDEHGPMPRDSIHFSEMIFAALERGGSRLSMIVGDADGLPLSVLEVQNSRVQKVSLSPLTFTHKMARLFIYEQLYRATEIRNNSKYHK 191          
BLAST of Gcaud7574.t1 vs. uniprot
Match: A0A1X6PD06_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PD06_PORUM)

HSP 1 Score: 99.0 bits (245), Expect = 2.050e-22
Identity = 65/169 (38.46%), Postives = 96/169 (56.80%), Query Frame = 0
Query:   36 AKLKVNLITIGKKSGKDAVFDALVAEYAKRMSREISMLEKSVKRESAAALV------------QELAQRESVMLMDEKGEMPRDSLHFSEMVFAALEEGGSRLSIVVGDADGL-PLDLSAIKSPR------IRKVSLSPLTFTHKMVRLFIYEQLYRATEIRKNSKYHK 185
            AK +V ++T+G++S KDAV+D+ V  Y  R    + +  + V   +AAA +                 R  V+ +DE G  P  S  F+ +++  LE GGSRL  V+G+ADGL P    A+++        +  +SLSPLT  HK+VRL + EQLYRA+EIR+ SKY+K
Sbjct:   47 AKARVEVVTLGRRSTKDAVYDSAVDMYITRAGPRLDIACRWVAPATAAAALLPSGSDRAGGGKATAGPRAHVICLDEGGSAPASSDAFATLLYDRLERGGSRLVFVIGEADGLSPAFREAVRAAGRGPAGGVEALSLSPLTLPHKLVRLVLVEQLYRASEIRRGSKYNK 215          
BLAST of Gcaud7574.t1 vs. uniprot
Match: A0A7S0NYP8_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NYP8_9EUKA)

HSP 1 Score: 97.8 bits (242), Expect = 2.680e-22
Identity = 66/147 (44.90%), Postives = 97/147 (65.99%), Query Frame = 0
Query:   39 KVNLITIGKKSGKDAVFDALVAEYAKRMSREISMLEKSVKRESAAALVQELAQRESVMLMDEKGEMPRDSLHFSEMVFAALEEGGSRLSIVVGDADGLPLDLSAIKSPRIRKVSLSPLTFTHKMVRLFIYEQLYRATEIRKNSKYHK 185
            +V ++++GK   K+A     +AEY KR+ R +S LE +  R+ AA L +    R + +++DE+G++   S  FSEM+F ALEEGG+RLS V+G ADGLP    A++      +SLS +T TH+M RL + EQ+YRA EIR+ SKYH+
Sbjct:   47 RVRIVSVGKT--KEAWLQLALAEYMKRV-RTVS-LECTWVRDDAALLAEA---RGACIVLDERGKLC-SSREFSEMLFRALEEGGARLSFVIGAADGLP---EALRDGPHPLLSLSRMTLTHQMARLVLAEQIYRACEIRRGSKYHR 182          
BLAST of Gcaud7574.t1 vs. uniprot
Match: A0A7S2UUR8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUR8_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 4.580e-22
Identity = 61/149 (40.94%), Postives = 95/149 (63.76%), Query Frame = 0
Query:   38 LKVNLITIGKKSGKDAVFDALVAEYAKRMSREISMLEKSVKRESAAALVQELAQRESVML-MDEKGEMPRDSLHFSEMVFAALEEGGSRLSIVVGDADGLPLDLSAIKSPRIRKVSLSPLTFTHKMVRLFIYEQLYRATEIRKNSKYHK 185
            L+V +   GKKSG +      + EY KR+   + +  K  K +SA  L+Q + + + V++ +DE+G++  +S  FS+M++  LE+GGSRL  V+G A+GLP    ++K+     +SLS +TFTH+  RL + EQ+YRATEIRK + YHK
Sbjct:   49 LEVTIHIRGKKSGGEDWISTGIDEYQKRLRSTLKLQTKWYKDDSA--LIQGVKKEKGVIVTLDERGKL-LNSKEFSQMMYKMLEDGGSRLHFVIGGAEGLP---PSLKTEAKHLISLSKMTFTHQQARLILAEQIYRATEIRKGTGYHK 191          
BLAST of Gcaud7574.t1 vs. uniprot
Match: A0A7S0LRI7_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LRI7_9EUKA)

HSP 1 Score: 95.9 bits (237), Expect = 1.450e-21
Identity = 60/147 (40.82%), Postives = 93/147 (63.27%), Query Frame = 0
Query:   39 KVNLITIGKKSGKDAVFDALVAEYAKRMSREISMLEKSVKRESAAALVQELAQRESVMLMDEKGEMPRDSLHFSEMVFAALEEGGSRLSIVVGDADGLPLDLSAIKSPRIRKVSLSPLTFTHKMVRLFIYEQLYRATEIRKNSKYHK 185
            +V ++++GK   K+A     +AEY KR+   +  LE +  R+  A + +    +   +++DE+G++   S  FSE++FAA+EEGGSRLS ++G ADGLP +L     P +   SL  +T TH+M RL + EQ+YRA EIR+ SKYH+
Sbjct:   46 RVRIVSVGKT--KEAWLQQALAEYTKRL--RMVQLEYTWVRDDTALIAEA---KGPCIVLDERGKLC-SSAEFSELLFAAIEEGGSRLSFIIGAADGLPAELRNGGHPLL---SLGRMTLTHQMARLLLAEQIYRACEIRRGSKYHR 181          
BLAST of Gcaud7574.t1 vs. uniprot
Match: A0A5J4YMA3_PORPP (Ribosomal RNA large subunit methyltransferase H n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YMA3_PORPP)

HSP 1 Score: 99.4 bits (246), Expect = 5.360e-21
Identity = 72/191 (37.70%), Postives = 105/191 (54.97%), Query Frame = 0
Query:   10 RNRFGSACQNAGGFQIQGHATKIA-----IKAKLKVNLITIGKKSGKDAVFDALVAEYAKRM--SREISMLEKSVK-RESAAALVQELAQRESVMLMDEKGEMPRDSLHFSEMVFAALEEGGSRLSIVVGDADGLPLDLSA-IKSPRIRK------VSLSPLTFTHKMVRLFIYEQLYRATEIRKNSKYHK 185
            R   GS C+ A  F     A+        ++  + V+++T+GKKS K+A  +  VAE+A RM  S  + +    +K  E+  A +    QR  V+ +DE G+ P  S  F+E+ +   E G S ++ V+G ADGLP  +     +PR ++      +SLS LTFTHKM R  I EQ+YRATEIRK S Y+K
Sbjct:  319 RTLSGSFCRRASCFCAHVTASSRTTSHGGVRCLVHVSVLTVGKKSAKEAWAEVPVAEHATRMRGSNAVDLKADYIKDNETLVARLDGDKQRGYVVALDECGDAPGSSAQFAELFYKWAELGNSHITFVIGGADGLPYVIKQDAAAPRTKRKYVQHFLSLSELTFTHKMARALICEQIYRATEIRKGSGYNK 509          
BLAST of Gcaud7574.t1 vs. uniprot
Match: R1FE40_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FE40_EMIHU)

HSP 1 Score: 92.0 bits (227), Expect = 1.800e-20
Identity = 59/150 (39.33%), Postives = 90/150 (60.00%), Query Frame = 0
Query:   39 KVNLITIGKKSGKDAVFDALVAEYAKRMSREISMLEKSVKRESAAALVQELAQRES---VMLMDEKGEMPRDSLHFSEMVFAALEEGGSRLSIVVGDADGLPLDLSAIKSPRIRKVSLSPLTFTHKMVRLFIYEQLYRATEIRKNSKYHK 185
            +VN++++GK    +A   + +  Y  R+   + +    VK ++A       A R+S   V+++DE+G+    S+ F+E +F  L++GGSRLS  +G A GLP    A+K  R   +SL PLTF H++ RL + EQ+YRATEIRK S YHK
Sbjct:    4 RVNIVSVGKAGRDEAWVTSAIDVYTTRLRSILDVQTTFVKDDTALTA----AVRKSSGGVLVLDERGKQCT-SVEFAERLFTQLDDGGSRLSFFIGGAAGLP---DALKQDRSILLSLGPLTFPHQVARLLLVEQIYRATEIRKGSGYHK 145          
BLAST of Gcaud7574.t1 vs. uniprot
Match: A0A7V9ZMJ9_9BACT (Ribosomal RNA large subunit methyltransferase H n=1 Tax=Parachlamydiaceae bacterium TaxID=2052176 RepID=A0A7V9ZMJ9_9BACT)

HSP 1 Score: 90.5 bits (223), Expect = 6.920e-20
Identity = 57/148 (38.51%), Postives = 90/148 (60.81%), Query Frame = 0
Query:   38 LKVNLITIGKKSGKDAVFDALVAEYAKRMSREISMLEKSVKRESAAALVQELAQRESVMLMDEKGEMPRDSLHFSEMVFAALEEGGSRLSIVVGDADGLPLDLSAIKSPRIRKVSLSPLTFTHKMVRLFIYEQLYRATEIRKNSKYHK 185
            +K+ ++++GK   K+A  +  +AEY +R+  ++       K + A   + E A  E V+ +D  G++   S  F+E     + EGGS+++ V+G ADGLP   S +K+  +  +SLSPLTFTH++ RL + EQ+YRA EI K SKYHK
Sbjct:    2 IKIRIVSVGKT--KEAWLEQALAEYLQRLKAQVIFEFCWCKDDVALTALVERANSEKVIGLDPNGQL-MTSERFAEFFDRQVVEGGSKVTFVIGGADGLP---SVLKT-NLNLISLSPLTFTHQITRLILIEQIYRAIEILKGSKYHK 142          
BLAST of Gcaud7574.t1 vs. uniprot
Match: UPI001BC8D685 (23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH n=1 Tax=Parachlamydia sp. AcF125 TaxID=2795736 RepID=UPI001BC8D685)

HSP 1 Score: 89.0 bits (219), Expect = 2.400e-19
Identity = 57/148 (38.51%), Postives = 89/148 (60.14%), Query Frame = 0
Query:   38 LKVNLITIGKKSGKDAVFDALVAEYAKRMSREISMLEKSVKRESAAALVQELAQRESVMLMDEKGEMPRDSLHFSEMVFAALEEGGSRLSIVVGDADGLPLDLSAIKSPRIRKVSLSPLTFTHKMVRLFIYEQLYRATEIRKNSKYHK 185
            LK+ ++++GK   K+   +  + EY KR+  ++ M  + V  +    L+  +++   V+ +D +G+M   S  FS  +   LEEGGSRL+ V+G A+GLPL L   K      +SLS LTFTH++ R+ + EQ+YRA EI K S+YHK
Sbjct:    2 LKIKILSVGKT--KETWLNTAIEEYQKRLQGQVEM--EWVWAKDDPQLMALVSREPLVVCLDPQGKM-LSSEQFSSFLMRKLEEGGSRLTFVIGGAEGLPLFLKQNKEA----ISLSLLTFTHQIARVVLIEQIYRALEIAKGSRYHK 140          
BLAST of Gcaud7574.t1 vs. uniprot
Match: A0A7S0I6P0_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I6P0_9EUKA)

HSP 1 Score: 89.0 bits (219), Expect = 7.590e-19
Identity = 53/103 (51.46%), Postives = 71/103 (68.93%), Query Frame = 0
Query:   83 AALVQELAQRESVMLMDEKGEMPRDSLHFSEMVFAALEEGGSRLSIVVGDADGLPLDLSAIKSPRIRKVSLSPLTFTHKMVRLFIYEQLYRATEIRKNSKYHK 185
            AALV++     SV+ +D  G+    S  F+E++FAA+E GGSRLS ++G A+GLP ++ A  +     VSLS LTFTH+M RL + EQ+YRATEIRK S YHK
Sbjct:   90 AALVKQARDAGSVIALDPLGKTCT-SEEFAELLFAAIERGGSRLSFIIGGAEGLPKEVRADAT----LVSLSRLTFTHQMARLVLAEQIYRATEIRKGSGYHK 187          
The following BLAST results are available for this feature:
BLAST of Gcaud7574.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IZ75_9FLOR1.800e-6261.11Ribosomal RNA large subunit methyltransferase H n=... [more]
A0A1X6PD06_PORUM2.050e-2238.46Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S0NYP8_9EUKA2.680e-2244.90Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S2UUR8_9STRA4.580e-2240.94Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S0LRI7_9EUKA1.450e-2140.82Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A5J4YMA3_PORPP5.360e-2137.70Ribosomal RNA large subunit methyltransferase H n=... [more]
R1FE40_EMIHU1.800e-2039.33Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7V9ZMJ9_9BACT6.920e-2038.51Ribosomal RNA large subunit methyltransferase H n=... [more]
UPI001BC8D6852.400e-1938.5123S rRNA (pseudouridine(1915)-N(3))-methyltransfer... [more]
A0A7S0I6P0_9EUKA7.590e-1951.46Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalGENE3D3.40.1280.10coord: 38..185
e-value: 1.2E-34
score: 121.3
IPR003742RNA methyltransferase RlmHPFAMPF02590SPOUT_MTasecoord: 39..184
e-value: 6.5E-28
score: 97.7
IPR003742RNA methyltransferase RlmHPANTHERPTHR33603METHYLTRANSFERASEcoord: 33..185
IPR003742RNA methyltransferase RlmHHAMAPMF_0065823SrRNA_methyltr_Hcoord: 38..185
score: 20.006628
IPR003742RNA methyltransferase RlmHCDDcd18081RlmH-likecoord: 40..185
e-value: 2.67578E-38
score: 126.787
IPR029028Alpha/beta knot methyltransferasesSUPERFAMILY75217alpha/beta knotcoord: 39..184

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1149_length_13302_cov_3.963742contigNODE_1149_length_13302_cov_3.963742:7718..8363 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7574.t1Gcaud7574.t1Gracilaria caudata M_176_S67 malemRNANODE_1149_length_13302_cov_3.963742 7718..8363 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7574.t1 ID=Gcaud7574.t1|Name=Gcaud7574.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=186bp
MTSVHGSFLRNRFGSACQNAGGFQIQGHATKIAIKAKLKVNLITIGKKSG
KDAVFDALVAEYAKRMSREISMLEKSVKRESAAALVQELAQRESVMLMDE
KGEMPRDSLHFSEMVFAALEEGGSRLSIVVGDADGLPLDLSAIKSPRIRK
VSLSPLTFTHKMVRLFIYEQLYRATEIRKNSKYHK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029026tRNA_m1G_MTases_N
IPR003742RlmH-like
IPR029028Alpha/beta_knot_MTases