Gcaud1302.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud1302.t1
Unique Name	Gcaud1302.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	337

Homology

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BLAST of Gcaud1302.t1 vs. uniprot
Match: R7QBX2_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBX2_CHOCR)

HSP 1 Score: 140 bits (354), Expect = 7.280e-35
Identity = 92/207 (44.44%), Postives = 107/207 (51.69%), Query Frame = 0

Query:  111 STSGKRVPTAVCSNCGKAVANNGANFRRHETACRRSRA---------------------------------------------------PVMPTP-----------------------RDQELIHVVQRLHSSIASLDVSARVCLRDALHSLSNKAANPTATPTPQQEAMNRAAEYLVLRMLFLSGAQLLMHTAPGTA-PPYPSSAQ 242
            S++  RVPTA CS CGK ++ NGANFRRHE ACRR R+                                                   PV   P                       RD +L++VV+RL SSI +LDVSAR+CLRDAL SLSNKA+NP   PTP+QEAMNRAAEYLVLRMLFLSG Q++ HTAPGT  P YP   Q
Sbjct:  128 SSTRPRVPTARCSLCGKNISTNGANFRRHEDACRRQRSERVSSARPPPSAVVTNQHQNQRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVQSEPAQLQRGSQSSPVPTQQQPTGMSRRDSDLLNVVRRLESSIHTLDVSARLCLRDALVSLSNKASNPNVPPTPEQEAMNRAAEYLVLRMLFLSGQQVV-HTAPGTVGPTYPPDPQ 333

[Close]

BLAST of Gcaud1302.t1 vs. uniprot
Match: A0A7S1TBA4_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TBA4_9RHOD)

HSP 1 Score: 86.7 bits (213), Expect = 4.420e-17
Identity = 54/125 (43.20%), Postives = 80/125 (64.00%), Query Frame = 0

Query:  114 GKRVPTAVCSNCGKAVANNGANFRR----HETACRRSRAPVMPTPRDQELIHVVQRLHSSIASLDVSARVCLRDALHSLSNKAANPTATPTPQQEAMNRAAEYLVLRMLFLSGAQLLMHTAPGTA 234
            G R P  V S+  ++  +  +++R     + ++  R R     T RD +L  +++RL   I+S+D SAR+CLRDAL SLS KA +P+   +P+ E M+RAAEYLVLR+LFL G   +M++APGTA
Sbjct:    7 GTRDPLWVGSDDSESATDKPSHWRGVSQFNPSSLSRRRNLPWTTRRDGDLPSILRRLEGIISSVDDSARICLRDALLSLSLKANSPSGR-SPEHEVMSRAAEYLVLRLLFLDGPNQVMYSAPGTA 130

The following BLAST results are available for this feature:

BLAST of Gcaud1302.t1 vs. uniprot

BLAST of Gcaud1302.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
R7QBX2_CHOCR	7.280e-35	44.44	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]
A0A7S1TBA4_9RHOD	4.420e-17	43.20	Hypothetical protein (Fragment) n=1 Tax=Compsopogo...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 290..310
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 68..89 score: 35.45 coord: 56..68 score: 36.92 coord: 96..112 score: 36.47 coord: 31..47 score: 23.53 coord: 226..238 score: 30.77 coord: 183..208 score: 28.46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 264..324
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 235..257
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 230..336
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..84

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_5200_length_1719_cov_2.656634	contig	NODE_5200_length_1719_cov_2.656634:78..1088 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1302.t1	Gcaud1302.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_5200_length_1719_cov_2.656634 78..1088 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud1302.t1 ID=Gcaud1302.t1|Name=Gcaud1302.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=337bp
MAEVPRDSGVFGALDSLEPDDAMDPMLLNLPVAPEPADWALDPLASDLYP
LSYMEPSLPANAPPASPPRAAPPPEPPAPAQRAPSPSQLAPASSPPRTRK
RPPPPSPSPSSTSGKRVPTAVCSNCGKAVANNGANFRRHETACRRSRAPV
MPTPRDQELIHVVQRLHSSIASLDVSARVCLRDALHSLSNKAANPTATPT
PQQEAMNRAAEYLVLRMLFLSGAQLLMHTAPGTAPPYPSSAQQADDSHQQ
VQRSDGDTLGLSDGGVQSGAQAHAQQLLTAQTQQQHQQHQQQQQQRRQQQ
QQQAQAHQTQQAQQAQQAQQAGTSHAVKEEKAARAP*