Gcaud1302.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1302.t1
Unique NameGcaud1302.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length337
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5200_length_1719_cov_2.656634contigNODE_5200_length_1719_cov_2.656634:78..1088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1302Gcaud1302Gracilaria caudata M_176_S67 malegeneNODE_5200_length_1719_cov_2.656634 78..1088 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1302.t1.start1Gcaud1302.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_5200_length_1719_cov_2.656634 78..80 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1302.t1.CDS1Gcaud1302.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_5200_length_1719_cov_2.656634 78..1088 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1302.t1.exon1Gcaud1302.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_5200_length_1719_cov_2.656634 78..1088 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1302.t1.stop1Gcaud1302.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_5200_length_1719_cov_2.656634 1086..1088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1302.t1Gcaud1302.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_5200_length_1719_cov_2.656634 78..1088 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1302.t1 ID=Gcaud1302.t1|Name=Gcaud1302.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=337bp
MAEVPRDSGVFGALDSLEPDDAMDPMLLNLPVAPEPADWALDPLASDLYP
LSYMEPSLPANAPPASPPRAAPPPEPPAPAQRAPSPSQLAPASSPPRTRK
RPPPPSPSPSSTSGKRVPTAVCSNCGKAVANNGANFRRHETACRRSRAPV
MPTPRDQELIHVVQRLHSSIASLDVSARVCLRDALHSLSNKAANPTATPT
PQQEAMNRAAEYLVLRMLFLSGAQLLMHTAPGTAPPYPSSAQQADDSHQQ
VQRSDGDTLGLSDGGVQSGAQAHAQQLLTAQTQQQHQQHQQQQQQRRQQQ
QQQAQAHQTQQAQQAQQAQQAGTSHAVKEEKAARAP*
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spliced messenger RNA

>Gcaud1302.t1 ID=Gcaud1302.t1|Name=Gcaud1302.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1011bp|location=Sequence derived from alignment at NODE_5200_length_1719_cov_2.656634:78..1088+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAAGTGCCGCGCGACTCCGGCGTGTTCGGCGCGCTCGACTCGCT
CGAACCTGACGACGCCATGGACCCCATGCTGCTCAACCTGCCCGTGGCGC
CAGAGCCCGCCGACTGGGCGCTCGACCCGCTGGCATCCGATTTGTATCCG
CTCTCGTACATGGAGCCGTCGTTACccgccaacgcgccgcccgcgtcgcc
accgcgcgccgcgccgccgccagagccgcccgcgccggcgcagcgcgcgc
catcgccctcgcagctggcgccggcctcctcgccgccgcgcacgcgcaag
cgaccgccgccgccctcgccgtcgccCTCCTCCACCTCGGGCAAGAGAGT
GCCCACCGCCGTGTGCTCCAATTGCGGCAAGGCGGTGGCCAATAACGGCG
CCAACTTCCGACGCCACGAGACGGCGTGCAGACGCTCCCGAGCACCGGTG
ATGCCCACGCCGCGCGACCAGGAACTCATTCATGTGGTGCAACGGCTGCA
TTCCAGCATTGCGTCTCTGGACGTGTCGGCTCGCGTTTGCCTGCGCGATG
CGCTGCATTCGCTGAGTAACAAGGCGGCAAATCCTACCGCCACGCCGACG
CCGCAGCAGGAGGCCATGAACCGAGCGGCGGAGTATCTGGTGCTACGCAT
GCTGTTCCTGTCCGGCGCGCAGCTGCTGATGCATACCGCGCCGGGCACAG
CGCCTCCGTACCCGTCGTCGGCACAACAGGCTGATGACAGCCATCAGCAG
GTGCAGCGAAGTGATGGCGACACGCTGGGCTTGAGCGATGGCGGCGTGCA
GTCGGGCGCGCAAGCGCACGCGCAGCAACTGTTGACGGCGCAAACacaac
aacaacatcaacaacatcaacaacaacaacaacaaagacgacaacaacaa
cagcaacaaGCgcaagcacatcaaacacaacaggcacagcaagcacagca
agcacagcaagcaGGCACGTCACACGCAGTGAAGGAGGAGAAAGCAGCTC
GCGCTCCATAG
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protein sequence of Gcaud1302.t1

>Gcaud1302.t1 ID=Gcaud1302.t1|Name=Gcaud1302.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=337bp
MAEVPRDSGVFGALDSLEPDDAMDPMLLNLPVAPEPADWALDPLASDLYP
LSYMEPSLPANAPPASPPRAAPPPEPPAPAQRAPSPSQLAPASSPPRTRK
RPPPPSPSPSSTSGKRVPTAVCSNCGKAVANNGANFRRHETACRRSRAPV
MPTPRDQELIHVVQRLHSSIASLDVSARVCLRDALHSLSNKAANPTATPT
PQQEAMNRAAEYLVLRMLFLSGAQLLMHTAPGTAPPYPSSAQQADDSHQQ
VQRSDGDTLGLSDGGVQSGAQAHAQQLLTAQTQQQHQQHQQQQQQRRQQQ
QQQAQAHQTQQAQQAQQAQQAGTSHAVKEEKAARAP*
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mRNA from alignment at NODE_5200_length_1719_cov_2.656634:78..1088+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1302.t1 ID=Gcaud1302.t1|Name=Gcaud1302.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1011bp|location=Sequence derived from alignment at NODE_5200_length_1719_cov_2.656634:78..1088+ (Gracilaria caudata M_176_S67 male)
ATGGCCGAAGTGCCGCGCGACTCCGGCGTGTTCGGCGCGCTCGACTCGCT
CGAACCTGACGACGCCATGGACCCCATGCTGCTCAACCTGCCCGTGGCGC
CAGAGCCCGCCGACTGGGCGCTCGACCCGCTGGCATCCGATTTGTATCCG
CTCTCGTACATGGAGCCGTCGTTACccgccaacgcgccgcccgcgtcgcc
accgcgcgccgcgccgccgccagagccgcccgcgccggcgcagcgcgcgc
catcgccctcgcagctggcgccggcctcctcgccgccgcgcacgcgcaag
cgaccgccgccgccctcgccgtcgccCTCCTCCACCTCGGGCAAGAGAGT
GCCCACCGCCGTGTGCTCCAATTGCGGCAAGGCGGTGGCCAATAACGGCG
CCAACTTCCGACGCCACGAGACGGCGTGCAGACGCTCCCGAGCACCGGTG
ATGCCCACGCCGCGCGACCAGGAACTCATTCATGTGGTGCAACGGCTGCA
TTCCAGCATTGCGTCTCTGGACGTGTCGGCTCGCGTTTGCCTGCGCGATG
CGCTGCATTCGCTGAGTAACAAGGCGGCAAATCCTACCGCCACGCCGACG
CCGCAGCAGGAGGCCATGAACCGAGCGGCGGAGTATCTGGTGCTACGCAT
GCTGTTCCTGTCCGGCGCGCAGCTGCTGATGCATACCGCGCCGGGCACAG
CGCCTCCGTACCCGTCGTCGGCACAACAGGCTGATGACAGCCATCAGCAG
GTGCAGCGAAGTGATGGCGACACGCTGGGCTTGAGCGATGGCGGCGTGCA
GTCGGGCGCGCAAGCGCACGCGCAGCAACTGTTGACGGCGCAAACacaac
aacaacatcaacaacatcaacaacaacaacaacaaagacgacaacaacaa
cagcaacaaGCgcaagcacatcaaacacaacaggcacagcaagcacagca
agcacagcaagcaGGCACGTCACACGCAGTGAAGGAGGAGAAAGCAGCTC
GCGCTCCATAG
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Coding sequence (CDS) from alignment at NODE_5200_length_1719_cov_2.656634:78..1088+

>Gcaud1302.t1 ID=Gcaud1302.t1|Name=Gcaud1302.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1011bp|location=Sequence derived from alignment at NODE_5200_length_1719_cov_2.656634:78..1088+ (Gracilaria caudata M_176_S67 male)
ATGGCCGAAGTGCCGCGCGACTCCGGCGTGTTCGGCGCGCTCGACTCGCT
CGAACCTGACGACGCCATGGACCCCATGCTGCTCAACCTGCCCGTGGCGC
CAGAGCCCGCCGACTGGGCGCTCGACCCGCTGGCATCCGATTTGTATCCG
CTCTCGTACATGGAGCCGTCGTTACccgccaacgcgccgcccgcgtcgcc
accgcgcgccgcgccgccgccagagccgcccgcgccggcgcagcgcgcgc
catcgccctcgcagctggcgccggcctcctcgccgccgcgcacgcgcaag
cgaccgccgccgccctcgccgtcgccCTCCTCCACCTCGGGCAAGAGAGT
GCCCACCGCCGTGTGCTCCAATTGCGGCAAGGCGGTGGCCAATAACGGCG
CCAACTTCCGACGCCACGAGACGGCGTGCAGACGCTCCCGAGCACCGGTG
ATGCCCACGCCGCGCGACCAGGAACTCATTCATGTGGTGCAACGGCTGCA
TTCCAGCATTGCGTCTCTGGACGTGTCGGCTCGCGTTTGCCTGCGCGATG
CGCTGCATTCGCTGAGTAACAAGGCGGCAAATCCTACCGCCACGCCGACG
CCGCAGCAGGAGGCCATGAACCGAGCGGCGGAGTATCTGGTGCTACGCAT
GCTGTTCCTGTCCGGCGCGCAGCTGCTGATGCATACCGCGCCGGGCACAG
CGCCTCCGTACCCGTCGTCGGCACAACAGGCTGATGACAGCCATCAGCAG
GTGCAGCGAAGTGATGGCGACACGCTGGGCTTGAGCGATGGCGGCGTGCA
GTCGGGCGCGCAAGCGCACGCGCAGCAACTGTTGACGGCGCAAACacaac
aacaacatcaacaacatcaacaacaacaacaacaaagacgacaacaacaa
cagcaacaaGCgcaagcacatcaaacacaacaggcacagcaagcacagca
agcacagcaagcaGGCACGTCACACGCAGTGAAGGAGGAGAAAGCAGCTC
GCGCTCCATAG
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