Gcaud7523.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7523.t1
Unique Name	Gcaud7523.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	283

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_51_length_65224_cov_4.623524	contig	NODE_51_length_65224_cov_4.623524:19320..20168 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7FV85
PFAMs	TMP-TENI
Max annot lvl	2759\|Eukaryota
Evalue	2.02e-20
EggNOG OGs	COG0352@1\|root,2S9Y2@2759\|Eukaryota
Description	Thiamine monophosphate synthase
COG category	H

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7523	Gcaud7523	Gracilaria caudata M_176_S67 male	gene	NODE_51_length_65224_cov_4.623524 19320..20168 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7523.t1.start1	Gcaud7523.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_51_length_65224_cov_4.623524 19320..19322 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7523.t1.CDS1	Gcaud7523.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_51_length_65224_cov_4.623524 19320..20168 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7523.t1.exon1	Gcaud7523.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_51_length_65224_cov_4.623524 19320..20168 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7523.t1.stop1	Gcaud7523.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_51_length_65224_cov_4.623524 20166..20168 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7523.t1	Gcaud7523.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_51_length_65224_cov_4.623524 19320..20168 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_51_length_65224_cov_4.623524:19320..20168+
coding sequence from alignment at NODE_51_length_65224_cov_4.623524:19320..20168+

mRNA sequence

>Gcaud7523.t1 ID=Gcaud7523.t1|Name=Gcaud7523.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=283bp
MLFAGRARPHPQISSCKGIYSSTTCLSFASPWLDTLTVFRGTEPCKCHST
LHTSEPPKYAKTLSKPSVIFITPDDICQNTRAAVKLVKAVLSGGIPFVQV
RDKHSSPLQVKRLVQALLTGGVPAHALAINGIAPAEVLAIDSHLGIHIKE
RDIGKLLPKANELMPSGSVIGCAVHSTLAAKQAIDIHEPSYLQVGTMYST
QSHPGKIPEGPGLLKKIRSVIGESPMLIGVGGINEDNLASVIEHGADGIA
VITQLSNASDPRRESASLLDLCKTAYEAKRRE*

spliced messenger RNA

>Gcaud7523.t1 ID=Gcaud7523.t1|Name=Gcaud7523.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=849bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:19320..20168+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTTCGCTGGAAGAGCAAGGCCTCATCCGCAGATTTCTTCGTGCAA
GGGAATCTACTCGTCAACAACCTGCTTATCTTTTGCATCGCCTTGGTTGG
ATACGCTCACTGTTTTCCGGGGCACTGAACCCTGCAAATGTCACAGTACC
CTACACACGTCTGAACCCCCAAAATACGCTAAGACTCTCTCGAAACCATC
AGTTATCTTTATTACGCCTGATGACATTTGTCAGAACACGAGGGCTGCGG
TGAAACTTGTGAAAGCCGTTCTGTCCGGAGGAATACCTTTTGTACAAGTT
CGAGATAAGCACAGTTCCCCGCTTCAAGTAAAACGGCTCGTCCAAGCCCT
CCTGACTGGCGGCGTCCCCGCACATGCGCTGGCTATAAACGGGATAGCTC
CAGCCGAAGTATTGGCTATTGACTCGCATCTTGGAATCCATATCAAAGAG
AGGGACATTGGAAAACTTCTCCCAAAAGCAAACGAGCTTATGCCGTCGGG
CAGTGTCATTGGGTGTGCAGTTCATTCAACTCTTGCAGCAAAACAAGCAA
TAGATATTCATGAACCCTCGTACCTTCAAGTTGGCACCATGTACTCCACT
CAAAGCCACCCTGGTAAGATACCTGAAGGACCTGGACTGCTGAAAAAGAT
TCGAAGCGTCATTGGGGAGTCCCCGATGCTTATTGGGGTCGGCGGCATAA
ACGAAGACAATTTAGCTTCCGTCATCGAACACGGCGCAGACGGTATCGCA
GTCATCACTCAGCTATCCAATGCCAGTGATCCGCGAAGGGAATCTGCGTC
GCTCTTGGATTTGTGTAAGACTGCATACGAAGCCAAGAGGAGAGAGTAA

protein sequence of Gcaud7523.t1

>Gcaud7523.t1 ID=Gcaud7523.t1|Name=Gcaud7523.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=283bp
MLFAGRARPHPQISSCKGIYSSTTCLSFASPWLDTLTVFRGTEPCKCHST
LHTSEPPKYAKTLSKPSVIFITPDDICQNTRAAVKLVKAVLSGGIPFVQV
RDKHSSPLQVKRLVQALLTGGVPAHALAINGIAPAEVLAIDSHLGIHIKE
RDIGKLLPKANELMPSGSVIGCAVHSTLAAKQAIDIHEPSYLQVGTMYST
QSHPGKIPEGPGLLKKIRSVIGESPMLIGVGGINEDNLASVIEHGADGIA
VITQLSNASDPRRESASLLDLCKTAYEAKRRE*

mRNA from alignment at NODE_51_length_65224_cov_4.623524:19320..20168+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7523.t1 ID=Gcaud7523.t1|Name=Gcaud7523.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=849bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:19320..20168+ (Gracilaria caudata M_176_S67 male)
ATGCTTTTCGCTGGAAGAGCAAGGCCTCATCCGCAGATTTCTTCGTGCAA
GGGAATCTACTCGTCAACAACCTGCTTATCTTTTGCATCGCCTTGGTTGG
ATACGCTCACTGTTTTCCGGGGCACTGAACCCTGCAAATGTCACAGTACC
CTACACACGTCTGAACCCCCAAAATACGCTAAGACTCTCTCGAAACCATC
AGTTATCTTTATTACGCCTGATGACATTTGTCAGAACACGAGGGCTGCGG
TGAAACTTGTGAAAGCCGTTCTGTCCGGAGGAATACCTTTTGTACAAGTT
CGAGATAAGCACAGTTCCCCGCTTCAAGTAAAACGGCTCGTCCAAGCCCT
CCTGACTGGCGGCGTCCCCGCACATGCGCTGGCTATAAACGGGATAGCTC
CAGCCGAAGTATTGGCTATTGACTCGCATCTTGGAATCCATATCAAAGAG
AGGGACATTGGAAAACTTCTCCCAAAAGCAAACGAGCTTATGCCGTCGGG
CAGTGTCATTGGGTGTGCAGTTCATTCAACTCTTGCAGCAAAACAAGCAA
TAGATATTCATGAACCCTCGTACCTTCAAGTTGGCACCATGTACTCCACT
CAAAGCCACCCTGGTAAGATACCTGAAGGACCTGGACTGCTGAAAAAGAT
TCGAAGCGTCATTGGGGAGTCCCCGATGCTTATTGGGGTCGGCGGCATAA
ACGAAGACAATTTAGCTTCCGTCATCGAACACGGCGCAGACGGTATCGCA
GTCATCACTCAGCTATCCAATGCCAGTGATCCGCGAAGGGAATCTGCGTC
GCTCTTGGATTTGTGTAAGACTGCATACGAAGCCAAGAGGAGAGAGTAA

Coding sequence (CDS) from alignment at NODE_51_length_65224_cov_4.623524:19320..20168+

>Gcaud7523.t1 ID=Gcaud7523.t1|Name=Gcaud7523.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=849bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:19320..20168+ (Gracilaria caudata M_176_S67 male)
ATGCTTTTCGCTGGAAGAGCAAGGCCTCATCCGCAGATTTCTTCGTGCAA
GGGAATCTACTCGTCAACAACCTGCTTATCTTTTGCATCGCCTTGGTTGG
ATACGCTCACTGTTTTCCGGGGCACTGAACCCTGCAAATGTCACAGTACC
CTACACACGTCTGAACCCCCAAAATACGCTAAGACTCTCTCGAAACCATC
AGTTATCTTTATTACGCCTGATGACATTTGTCAGAACACGAGGGCTGCGG
TGAAACTTGTGAAAGCCGTTCTGTCCGGAGGAATACCTTTTGTACAAGTT
CGAGATAAGCACAGTTCCCCGCTTCAAGTAAAACGGCTCGTCCAAGCCCT
CCTGACTGGCGGCGTCCCCGCACATGCGCTGGCTATAAACGGGATAGCTC
CAGCCGAAGTATTGGCTATTGACTCGCATCTTGGAATCCATATCAAAGAG
AGGGACATTGGAAAACTTCTCCCAAAAGCAAACGAGCTTATGCCGTCGGG
CAGTGTCATTGGGTGTGCAGTTCATTCAACTCTTGCAGCAAAACAAGCAA
TAGATATTCATGAACCCTCGTACCTTCAAGTTGGCACCATGTACTCCACT
CAAAGCCACCCTGGTAAGATACCTGAAGGACCTGGACTGCTGAAAAAGAT
TCGAAGCGTCATTGGGGAGTCCCCGATGCTTATTGGGGTCGGCGGCATAA
ACGAAGACAATTTAGCTTCCGTCATCGAACACGGCGCAGACGGTATCGCA
GTCATCACTCAGCTATCCAATGCCAGTGATCCGCGAAGGGAATCTGCGTC
GCTCTTGGATTTGTGTAAGACTGCATACGAAGCCAAGAGGAGAGAGTAA