Gcaud7528.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7528.t1
Unique NameGcaud7528.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length177
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_51_length_65224_cov_4.623524contigNODE_51_length_65224_cov_4.623524:28032..28674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704666.1
Preferred namePETF2
PFAMsFer2
Max annot lvl2759|Eukaryota
KEGG koko:K02639
KEGG Pathwayko00195,map00195
Evalue4.75e-49
EggNOG OGsCOG0633@1|root,2RXRY@2759|Eukaryota
Description2Fe-2S iron-sulfur cluster binding domain
COG categoryC
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7528Gcaud7528Gracilaria caudata M_176_S67 malegeneNODE_51_length_65224_cov_4.623524 28032..28674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7528.t1Gcaud7528.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_51_length_65224_cov_4.623524 28032..28674 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7528.t1.start1Gcaud7528.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_51_length_65224_cov_4.623524 28032..28034 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7528.t1.CDS1Gcaud7528.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_51_length_65224_cov_4.623524 28032..28184 +
Gcaud7528.t1.CDS2Gcaud7528.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_51_length_65224_cov_4.623524 28297..28674 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7528.t1.exon1Gcaud7528.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_51_length_65224_cov_4.623524 28032..28184 +
Gcaud7528.t1.exon2Gcaud7528.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_51_length_65224_cov_4.623524 28297..28674 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7528.t1.intron1Gcaud7528.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_51_length_65224_cov_4.623524 28185..28296 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7528.t1.stop1Gcaud7528.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_51_length_65224_cov_4.623524 28672..28674 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7528.t1 ID=Gcaud7528.t1|Name=Gcaud7528.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=177bp
MGLAFLSPISPHHAGKPVLQVSKCVQQPPPSPPSVTSTKPPYRRRDGSLP
SRPGAKTYQVTVEDPHKGVVHQYSVPEDRYVWHSMSDQGADIPSSCRNGC
CTTCAVKIKSGQVQQDQALGLLKDMRAKGYALLCVSYPMSDMHCVLQDED
EVYVKQFGSSFEGGGVEWGGFVPEDD*
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spliced messenger RNA

>Gcaud7528.t1 ID=Gcaud7528.t1|Name=Gcaud7528.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=531bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:28032..28674+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCTAGCGTTCTTATCCCCAATCTCGCCGCACCATGCGGGAAAACC
TGTCCTTCAAGTATCGAAATGCGTTCAACAACCACCGCCTTCACCTCCAT
CAGTAACCTCCACAAAACCACCATATCGCAGAAGGGACGGATCGTTACCA
AGCAGACCAGGGGCGAAAACATATCAAGTAACAGTTGAAGACCCTCATAA
GGGTGTAGTTCATCAGTACTCAGTACCAGAAGATCGATATGTTTGGCACA
GTATGAGCGATCAGGGCGCCGATATTCCTTCGTCATGTCGAAACGGTTGT
TGCACCACATGCGCTGTTAAGATAAAATCCGGTCAAGTTCAACAGGATCA
AGCGCTGGGATTGCTGAAGGACATGAGAGCGAAAGGTTATGCGTTATTGT
GCGTTAGTTACCCTATGAGCGACATGCACTGTGTGCTTCAAGATGAAGAC
GAAGTCTATGTCAAGCAATTCGGCTCTTCATTCGAGGGCGGTGGTGTCGA
ATGGGGTGGCTTTGTGCCGGAAGATGACTAA
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protein sequence of Gcaud7528.t1

>Gcaud7528.t1 ID=Gcaud7528.t1|Name=Gcaud7528.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=177bp
MGLAFLSPISPHHAGKPVLQVSKCVQQPPPSPPSVTSTKPPYRRRDGSLP
SRPGAKTYQVTVEDPHKGVVHQYSVPEDRYVWHSMSDQGADIPSSCRNGC
CTTCAVKIKSGQVQQDQALGLLKDMRAKGYALLCVSYPMSDMHCVLQDED
EVYVKQFGSSFEGGGVEWGGFVPEDD*
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mRNA from alignment at NODE_51_length_65224_cov_4.623524:28032..28674+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7528.t1 ID=Gcaud7528.t1|Name=Gcaud7528.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=643bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:28032..28674+ (Gracilaria caudata M_176_S67 male)
ATGGGTCTAGCGTTCTTATCCCCAATCTCGCCGCACCATGCGGGAAAACC
TGTCCTTCAAGTATCGAAATGCGTTCAACAACCACCGCCTTCACCTCCAT
CAGTAACCTCCACAAAACCACCATATCGCAGAAGGGACGGATCGTTACCA
AGCGTACGTTCGTTACTTCCCTCAATCTGAACACACCTTCTCTCAATCGG
AAGGAATAGCGAGCTTCTCACACCTCTCTCCTTCTCGTTTTTTATGCATA
TCACTTGATTCACAGAGACCAGGGGCGAAAACATATCAAGTAACAGTTGA
AGACCCTCATAAGGGTGTAGTTCATCAGTACTCAGTACCAGAAGATCGAT
ATGTTTGGCACAGTATGAGCGATCAGGGCGCCGATATTCCTTCGTCATGT
CGAAACGGTTGTTGCACCACATGCGCTGTTAAGATAAAATCCGGTCAAGT
TCAACAGGATCAAGCGCTGGGATTGCTGAAGGACATGAGAGCGAAAGGTT
ATGCGTTATTGTGCGTTAGTTACCCTATGAGCGACATGCACTGTGTGCTT
CAAGATGAAGACGAAGTCTATGTCAAGCAATTCGGCTCTTCATTCGAGGG
CGGTGGTGTCGAATGGGGTGGCTTTGTGCCGGAAGATGACTAA
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Coding sequence (CDS) from alignment at NODE_51_length_65224_cov_4.623524:28032..28674+

>Gcaud7528.t1 ID=Gcaud7528.t1|Name=Gcaud7528.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=531bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:28032..28674+ (Gracilaria caudata M_176_S67 male)
ATGGGTCTAGCGTTCTTATCCCCAATCTCGCCGCACCATGCGGGAAAACC
TGTCCTTCAAGTATCGAAATGCGTTCAACAACCACCGCCTTCACCTCCAT
CAGTAACCTCCACAAAACCACCATATCGCAGAAGGGACGGATCGTTACCA
AGCAGACCAGGGGCGAAAACATATCAAGTAACAGTTGAAGACCCTCATAA
GGGTGTAGTTCATCAGTACTCAGTACCAGAAGATCGATATGTTTGGCACA
GTATGAGCGATCAGGGCGCCGATATTCCTTCGTCATGTCGAAACGGTTGT
TGCACCACATGCGCTGTTAAGATAAAATCCGGTCAAGTTCAACAGGATCA
AGCGCTGGGATTGCTGAAGGACATGAGAGCGAAAGGTTATGCGTTATTGT
GCGTTAGTTACCCTATGAGCGACATGCACTGTGTGCTTCAAGATGAAGAC
GAAGTCTATGTCAAGCAATTCGGCTCTTCATTCGAGGGCGGTGGTGTCGA
ATGGGGTGGCTTTGTGCCGGAAGATGACTAA
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