Gcaud7541.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7541.t1
Unique Name	Gcaud7541.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	542

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_51_length_65224_cov_4.623524	contig	NODE_51_length_65224_cov_4.623524:55308..56933 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7541	Gcaud7541	Gracilaria caudata M_176_S67 male	gene	NODE_51_length_65224_cov_4.623524 55308..57125 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7541.t1.stop1	Gcaud7541.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_51_length_65224_cov_4.623524 55308..55310 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7541.t1.CDS1	Gcaud7541.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_51_length_65224_cov_4.623524 55308..56933 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7541.t1.exon1	Gcaud7541.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_51_length_65224_cov_4.623524 55308..56933 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7541.t1.start1	Gcaud7541.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_51_length_65224_cov_4.623524 56931..56933 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7541.t1	Gcaud7541.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_51_length_65224_cov_4.623524 55308..56933 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_51_length_65224_cov_4.623524:55308..56933-
coding sequence from alignment at NODE_51_length_65224_cov_4.623524:55308..56933-

mRNA sequence

>Gcaud7541.t1 ID=Gcaud7541.t1|Name=Gcaud7541.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=542bp
MSKEEEIRLENIAKNHVPRNLREAIDAIEVIKIPKKAMLAALRTLNVKVA
ELRIVYCREILATKLVQRQLCMSTVLDCIDDFDIKNPSLANERHHRLRKL
PETFARGPDKKKKEEDHIFWLSGDMPVYGDNRNVVPGMPPLDEVIARIER
EKSKPEQEAAESAPVPEERKEKVAHTLPPADFGNVAAEETQDDNSEVSDD
AQPFGDGEYCRLLHVLADKRVAPYLSQLRDPELKEKPWTLHVAPIFNDKK
FRPVPIKSVSGGVKRRDIIGIYPRFICERDGETLQQKFAAFKSLYRAAVR
GYVQFGDDKSHTFVNFCQSKRYIMYAFCLLENFPQLEPLTLKPEETRDEV
RTKAGNASKRPITLVDLDGEDDLADIPATPVAKRAKAAMLGDKERDELKK
IIEGGVPDDLGNTFGGQPGFNPQMTRSEEIQWREREEKDKAVYDAIARTG
GMGSEGLLWCLLRSAPGSAKFMDIEDRLREKILTELRHAQDSHLISLLTG
LREARTLLADTQDPQEAALYARSKSLMLSNLRSNLRRRQER*

spliced messenger RNA

>Gcaud7541.t1 ID=Gcaud7541.t1|Name=Gcaud7541.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1626bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:55308..56933- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGAAGGAAGAGGAAATCCGATTGGAGAACATTGCCAAGAATCACGT
TCCTCGAAACCTCAGGGAGGCTATAGATGCAATCGAAGTCATTAAGATTC
CAAAGAAAGCCATGCTCGCTGCCCTGCGAACCTTGAACGTCAAGGTTGCA
GAGCTTCGGATTGTTTATTGTCGTGAGATACTAGCAACCAAACTCGTTCA
GCGTCAGTTGTGCATGAGCACCGTACTAGATTGCATTGATGATTTCGATA
TCAAGAATCCCTCACTTGCGAATGAACGTCACCACCGTCTGCGAAAGTTA
CCGGAAACTTTTGCGAGAGGTCCGGACAAGAAAAAGAAGGAAGAAGACCA
TATTTTTTGGCTTAGCGGAGATATGCCAGTATATGGTGATAATCGAAATG
TAGTTCCGGGAATGCCCCCCCTTGACGAAGTGATTGCTCGCATTGAGCGG
GAGAAATCAAAGCCAGAACAAGAGGCTGCAGAGAGTGCTCCAGTTCCCGA
AGAGCGGAAAGAGAAAGTAGCACACACTCTCCCTCCTGCGGATTTTGGGA
ACGTAGCGGCGGAAGAAACACAAGACGATAATTCTGAGGTATCAGACGAT
GCCCAACCTTTTGGAGACGGAGAGTACTGCAGACTGCTTCATGTTCTGGC
GGACAAACGCGTGGCACCTTACTTGAGTCAACTACGCGACCCTGAACTAA
AGGAAAAGCCATGGACGTTACATGTCGCACCTATATTCAACGATAAGAAG
TTCAGACCCGTTCCAATCAAATCTGTTTCAGGAGGTGTGAAAAGGAGAGA
TATAATTGGCATCTATCCAAGATTTATTTGTGAGCGAGATGGTGAAACTT
TGCAACAGAAGTTTGCTGCGTTTAAATCATTGTATAGGGCTGCCGTTCGA
GGATACGTACAATTTGGCGACGATAAATCGCATACATTTGTGAATTTCTG
TCAGTCTAAACGATATATAATGTATGCGTTCTGCCTATTGGAGAATTTTC
CACAGCTGGAACCACTCACTCTGAAACCGGAAGAAACAAGAGATGAAGTA
AGAACAAAGGCAGGAAATGCTTCGAAGCGTCCTATCACGCTGGTAGACTT
GGATGGAGAGGATGATCTCGCGGATATTCCTGCGACCCCGGTTGCGAAAC
GAGCCAAAGCTGCTATGCTTGGAGATAAGGAGCGTGATGAGCTCAAAAAG
ATAATAGAAGGCGGTGTACCTGATGACCTTGGAAACACATTTGGCGGTCA
ACCTGGATTCAATCCTCAAATGACAAGGTCAGAAGAGATTCAATGGCGTG
AACGTGAGGAGAAAGATAAGGCAGTTTATGACGCTATTGCTCGGACTGGC
GGGATGGGAAGTGAAGGATTGCTGTGGTGCTTGTTAAGATCTGCACCTGG
TTCTGCAAAGTTCATGGATATCGAAGATAGATTACGAGAGAAAATCCTCA
CGGAGCTGAGACATGCTCAGGACAGTCATCTCATCTCCCTTCTAACGGGG
TTACGAGAAGCACGCACTTTGCTAGCGGACACGCAAGATCCCCAAGAAGC
CGCTTTGTATGCTAGATCCAAGAGCCTTATGCTTTCTAATCTACGATCCA
ATCTTCGTCGTCGTCAAGAGAGATGA

protein sequence of Gcaud7541.t1

>Gcaud7541.t1 ID=Gcaud7541.t1|Name=Gcaud7541.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=542bp
MSKEEEIRLENIAKNHVPRNLREAIDAIEVIKIPKKAMLAALRTLNVKVA
ELRIVYCREILATKLVQRQLCMSTVLDCIDDFDIKNPSLANERHHRLRKL
PETFARGPDKKKKEEDHIFWLSGDMPVYGDNRNVVPGMPPLDEVIARIER
EKSKPEQEAAESAPVPEERKEKVAHTLPPADFGNVAAEETQDDNSEVSDD
AQPFGDGEYCRLLHVLADKRVAPYLSQLRDPELKEKPWTLHVAPIFNDKK
FRPVPIKSVSGGVKRRDIIGIYPRFICERDGETLQQKFAAFKSLYRAAVR
GYVQFGDDKSHTFVNFCQSKRYIMYAFCLLENFPQLEPLTLKPEETRDEV
RTKAGNASKRPITLVDLDGEDDLADIPATPVAKRAKAAMLGDKERDELKK
IIEGGVPDDLGNTFGGQPGFNPQMTRSEEIQWREREEKDKAVYDAIARTG
GMGSEGLLWCLLRSAPGSAKFMDIEDRLREKILTELRHAQDSHLISLLTG
LREARTLLADTQDPQEAALYARSKSLMLSNLRSNLRRRQER*

mRNA from alignment at NODE_51_length_65224_cov_4.623524:55308..56933-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7541.t1 ID=Gcaud7541.t1|Name=Gcaud7541.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1626bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:55308..56933- (Gracilaria caudata M_176_S67 male)
ATGTCGAAGGAAGAGGAAATCCGATTGGAGAACATTGCCAAGAATCACGT
TCCTCGAAACCTCAGGGAGGCTATAGATGCAATCGAAGTCATTAAGATTC
CAAAGAAAGCCATGCTCGCTGCCCTGCGAACCTTGAACGTCAAGGTTGCA
GAGCTTCGGATTGTTTATTGTCGTGAGATACTAGCAACCAAACTCGTTCA
GCGTCAGTTGTGCATGAGCACCGTACTAGATTGCATTGATGATTTCGATA
TCAAGAATCCCTCACTTGCGAATGAACGTCACCACCGTCTGCGAAAGTTA
CCGGAAACTTTTGCGAGAGGTCCGGACAAGAAAAAGAAGGAAGAAGACCA
TATTTTTTGGCTTAGCGGAGATATGCCAGTATATGGTGATAATCGAAATG
TAGTTCCGGGAATGCCCCCCCTTGACGAAGTGATTGCTCGCATTGAGCGG
GAGAAATCAAAGCCAGAACAAGAGGCTGCAGAGAGTGCTCCAGTTCCCGA
AGAGCGGAAAGAGAAAGTAGCACACACTCTCCCTCCTGCGGATTTTGGGA
ACGTAGCGGCGGAAGAAACACAAGACGATAATTCTGAGGTATCAGACGAT
GCCCAACCTTTTGGAGACGGAGAGTACTGCAGACTGCTTCATGTTCTGGC
GGACAAACGCGTGGCACCTTACTTGAGTCAACTACGCGACCCTGAACTAA
AGGAAAAGCCATGGACGTTACATGTCGCACCTATATTCAACGATAAGAAG
TTCAGACCCGTTCCAATCAAATCTGTTTCAGGAGGTGTGAAAAGGAGAGA
TATAATTGGCATCTATCCAAGATTTATTTGTGAGCGAGATGGTGAAACTT
TGCAACAGAAGTTTGCTGCGTTTAAATCATTGTATAGGGCTGCCGTTCGA
GGATACGTACAATTTGGCGACGATAAATCGCATACATTTGTGAATTTCTG
TCAGTCTAAACGATATATAATGTATGCGTTCTGCCTATTGGAGAATTTTC
CACAGCTGGAACCACTCACTCTGAAACCGGAAGAAACAAGAGATGAAGTA
AGAACAAAGGCAGGAAATGCTTCGAAGCGTCCTATCACGCTGGTAGACTT
GGATGGAGAGGATGATCTCGCGGATATTCCTGCGACCCCGGTTGCGAAAC
GAGCCAAAGCTGCTATGCTTGGAGATAAGGAGCGTGATGAGCTCAAAAAG
ATAATAGAAGGCGGTGTACCTGATGACCTTGGAAACACATTTGGCGGTCA
ACCTGGATTCAATCCTCAAATGACAAGGTCAGAAGAGATTCAATGGCGTG
AACGTGAGGAGAAAGATAAGGCAGTTTATGACGCTATTGCTCGGACTGGC
GGGATGGGAAGTGAAGGATTGCTGTGGTGCTTGTTAAGATCTGCACCTGG
TTCTGCAAAGTTCATGGATATCGAAGATAGATTACGAGAGAAAATCCTCA
CGGAGCTGAGACATGCTCAGGACAGTCATCTCATCTCCCTTCTAACGGGG
TTACGAGAAGCACGCACTTTGCTAGCGGACACGCAAGATCCCCAAGAAGC
CGCTTTGTATGCTAGATCCAAGAGCCTTATGCTTTCTAATCTACGATCCA
ATCTTCGTCGTCGTCAAGAGAGATGA

Coding sequence (CDS) from alignment at NODE_51_length_65224_cov_4.623524:55308..56933-

>Gcaud7541.t1 ID=Gcaud7541.t1|Name=Gcaud7541.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1626bp|location=Sequence derived from alignment at NODE_51_length_65224_cov_4.623524:55308..56933- (Gracilaria caudata M_176_S67 male)
ATGTCGAAGGAAGAGGAAATCCGATTGGAGAACATTGCCAAGAATCACGT
TCCTCGAAACCTCAGGGAGGCTATAGATGCAATCGAAGTCATTAAGATTC
CAAAGAAAGCCATGCTCGCTGCCCTGCGAACCTTGAACGTCAAGGTTGCA
GAGCTTCGGATTGTTTATTGTCGTGAGATACTAGCAACCAAACTCGTTCA
GCGTCAGTTGTGCATGAGCACCGTACTAGATTGCATTGATGATTTCGATA
TCAAGAATCCCTCACTTGCGAATGAACGTCACCACCGTCTGCGAAAGTTA
CCGGAAACTTTTGCGAGAGGTCCGGACAAGAAAAAGAAGGAAGAAGACCA
TATTTTTTGGCTTAGCGGAGATATGCCAGTATATGGTGATAATCGAAATG
TAGTTCCGGGAATGCCCCCCCTTGACGAAGTGATTGCTCGCATTGAGCGG
GAGAAATCAAAGCCAGAACAAGAGGCTGCAGAGAGTGCTCCAGTTCCCGA
AGAGCGGAAAGAGAAAGTAGCACACACTCTCCCTCCTGCGGATTTTGGGA
ACGTAGCGGCGGAAGAAACACAAGACGATAATTCTGAGGTATCAGACGAT
GCCCAACCTTTTGGAGACGGAGAGTACTGCAGACTGCTTCATGTTCTGGC
GGACAAACGCGTGGCACCTTACTTGAGTCAACTACGCGACCCTGAACTAA
AGGAAAAGCCATGGACGTTACATGTCGCACCTATATTCAACGATAAGAAG
TTCAGACCCGTTCCAATCAAATCTGTTTCAGGAGGTGTGAAAAGGAGAGA
TATAATTGGCATCTATCCAAGATTTATTTGTGAGCGAGATGGTGAAACTT
TGCAACAGAAGTTTGCTGCGTTTAAATCATTGTATAGGGCTGCCGTTCGA
GGATACGTACAATTTGGCGACGATAAATCGCATACATTTGTGAATTTCTG
TCAGTCTAAACGATATATAATGTATGCGTTCTGCCTATTGGAGAATTTTC
CACAGCTGGAACCACTCACTCTGAAACCGGAAGAAACAAGAGATGAAGTA
AGAACAAAGGCAGGAAATGCTTCGAAGCGTCCTATCACGCTGGTAGACTT
GGATGGAGAGGATGATCTCGCGGATATTCCTGCGACCCCGGTTGCGAAAC
GAGCCAAAGCTGCTATGCTTGGAGATAAGGAGCGTGATGAGCTCAAAAAG
ATAATAGAAGGCGGTGTACCTGATGACCTTGGAAACACATTTGGCGGTCA
ACCTGGATTCAATCCTCAAATGACAAGGTCAGAAGAGATTCAATGGCGTG
AACGTGAGGAGAAAGATAAGGCAGTTTATGACGCTATTGCTCGGACTGGC
GGGATGGGAAGTGAAGGATTGCTGTGGTGCTTGTTAAGATCTGCACCTGG
TTCTGCAAAGTTCATGGATATCGAAGATAGATTACGAGAGAAAATCCTCA
CGGAGCTGAGACATGCTCAGGACAGTCATCTCATCTCCCTTCTAACGGGG
TTACGAGAAGCACGCACTTTGCTAGCGGACACGCAAGATCCCCAAGAAGC
CGCTTTGTATGCTAGATCCAAGAGCCTTATGCTTTCTAATCTACGATCCA
ATCTTCGTCGTCGTCAAGAGAGATGA