Gcaud7572.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7572.t1
Unique Name	Gcaud7572.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	754

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1149_length_13302_cov_3.963742	contig	NODE_1149_length_13302_cov_3.963742:4097..6358 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	272134.KB731324_gene4813
Preferred name	chlD
PFAMs	Mg_chelatase,VWA_2
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC01012
KEGG ko	ko:K03404
KEGG Reaction	R03877
KEGG Pathway	ko00860,ko01100,ko01110,map00860,map01100,map01110
Evalue	1.48e-252
EggNOG OGs	COG1239@1\|root,COG1240@1\|root,COG1239@2\|Bacteria,COG1240@2\|Bacteria,1G0CI@1117\|Cyanobacteria,1H7BS@1150\|Oscillatoriales
EC	6.6.1.1
Description	Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX
COG category	H
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7572	Gcaud7572	Gracilaria caudata M_176_S67 male	gene	NODE_1149_length_13302_cov_3.963742 4097..6358 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7572.t1.start1	Gcaud7572.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1149_length_13302_cov_3.963742 4097..4099 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7572.t1.CDS1	Gcaud7572.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1149_length_13302_cov_3.963742 4097..6358 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7572.t1.exon1	Gcaud7572.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1149_length_13302_cov_3.963742 4097..6358 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7572.t1.stop1	Gcaud7572.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1149_length_13302_cov_3.963742 6356..6358 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7572.t1	Gcaud7572.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1149_length_13302_cov_3.963742 4097..6358 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1149_length_13302_cov_3.963742:4097..6358+
coding sequence from alignment at NODE_1149_length_13302_cov_3.963742:4097..6358+

mRNA sequence

>Gcaud7572.t1 ID=Gcaud7572.t1|Name=Gcaud7572.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=754bp
MSPSAPFPCPCPSAFVPSAPLAPRRRRPRAARHCAPLCTLSAPDPQTNTS
FVTPAQRAAAAAALEQSQDVAQPPGRAEQDSSRVFPLAAIVGQDFVKLSL
LLAAVNARISGVGISGRRGTAKSVMARAIHALLPPIEVVTGSYFNEDPPP
LSDTAAITNDEPDPNRTVIPAPFVQVPLNVTEDRLIGSVDVEQSVRKGET
VFQPGLLASAHRGVLYIDELNLLDDGLANILLEVISSGVVRIEREGLSVS
HPCRPLVIATYNPEEGLVRPHLLDRLAINLSVDAVPLSMEQRVAAVESAT
SFSDDPTAFVSRVFEETDQMSTNIVLAREYLQDVSLSNEQLSYLVTEAVR
AACQGHRAELFAMEVAKAAAALDGRERVSAEDLKTAVRLAILPRSLVMNE
SQMEPEMDAPPPPPPPPPQNQDEEVDDELQEEEDDSQDQDQQEEQEEEAP
ELPEEFMFDPEGVVMDPELLEFSKSQKQGKAGGRGLVFSQDRGRYIKAML
PRGGTQRLAVDATLRAAAPFQKGRRARASDGSLRKVFVEESDMRIKRLAR
KAGALVVFLVDASGSMALNRMNAAKGAAIRLLTEAYQTRDKVSLIPFQGN
RADVVLPPTKSVTMAKKRLETMPCGGGSPLAHGLMQAVRVGVNAQKSGDI
GKVIVVCISDGRANVPLAISEGEELEEKMSKADLKQETLNIAKQIAAIPG
IELLCIDTENKFVSTGVAKEIATNAGGTYHSLPKATDAAVAGVASSAIEA
MKA*

spliced messenger RNA

>Gcaud7572.t1 ID=Gcaud7572.t1|Name=Gcaud7572.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2262bp|location=Sequence derived from alignment at NODE_1149_length_13302_cov_3.963742:4097..6358+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACCGTCGGCCCCCTTCCCGTGCCCGTGTCCGTCTGCATTCGTGCC
CTCCGCCCCACTCGCTCCGCGTCGCCGCCGTCCGCGCGCCGCGCGCCATT
GCGCCCCGCTCTGCACTCTCTCCGCACCCGACCCACAGACCAACACCTCC
TTCGTCACCCCCGCGCAGCGTGCCGCCGCCGCCGCCGCGCTCGAGCAATC
TCAGGATGTCGCGCAGCCCCCTGGTCGCGCAGAGCAGGACTCTTCGCGCG
TGTTCCCGTTGGCCGCCATAGTTGGACAGGATTTTGTCAAGTTGTCGCTT
CTGTTGGCCGCCGTCAATGCGCGAATTTCTGGCGTTGGTATCAGCGGGCG
CCGTGGGACGGCCAAGTCGGTCATGGCACGCGCCATTCATGCGCTCTTAC
CACCTATTGAGGTTGTGACCGGCAGCTATTTCAATGAGGATCCACCGCCT
CTTTCCGACACTGCCGCAATCACCAATGATGAGCCGGATCCAAATCGTAC
TGTCATCCCCGCACCATTTGTGCAGGTCCCGCTCAATGTCACTGAAGATC
GTTTGATTGGTTCCGTGGACGTGGAGCAGTCTGTCAGGAAAGGAGAGACA
GTCTTTCAGCCGGGGCTGTTAGCGAGCGCTCATCGCGGTGTGCTTTACAT
TGACGAGCTCAATCTTCTCGATGACGGCTTGGCAAACATCCTTCTCGAAG
TAATATCAAGCGGCGTTGTGCGTATTGAACGTGAGGGCTTGTCTGTATCT
CACCCATGTCGTCCTCTCGTCATTGCAACCTACAACCCAGAGGAAGGTCT
CGTGCGTCCGCACTTGCTCGATCGCCTGGCAATCAATCTTTCAGTAGATG
CCGTCCCACTTTCCATGGAACAAAGAGTAGCAGCCGTTGAATCGGCCACC
AGCTTCAGCGATGATCCCACTGCGTTTGTGTCCCGCGTATTTGAAGAGAC
CGATCAAATGTCTACTAATATTGTTCTTGCACGCGAATACTTGCAAGATG
TTTCTCTATCCAATGAACAACTTTCCTATCTTGTGACGGAGGCAGTGCGG
GCTGCGTGTCAGGGTCACCGTGCCGAGCTGTTTGCGATGGAGGTTGCGAA
AGCGGCCGCGGCTTTGGACGGCAGGGAGAGGGTTTCTGCTGAAGATCTCA
AGACCGCTGTACGACTTGCCATTCTCCCGCGCTCACTGGTTATGAACGAA
AGTCAGATGGAACCGGAAATGGATGCCccgccaccaccgccaccaccacc
gccccaGAATCAGGACGAAGAGGTTGACGATGAGCTTCAGgaggaagaag
acgacagtcaagaccaagatcagcaagaagaacaggaagaggaagCTCCA
GAGCTTCCTGAAGAGTTCATGTTTGATCCCGAGGGGGTAGTTATGGATCC
TGAGCTCCTTGAATTCAGCAAGTCACAAAAGCAAGGTAAAGCGGGTGGAC
GCGGTCTCGTGTTCTCCCAGGATCGCGGGCGCTATATAAAGGCAATGTTG
CCGCGTGGAGGAACTCAGCGACTTGCCGTCGACGCGACGTTACGTGCCGC
TGCTCCCTTCCAGAAAGGGAGACGTGCAAGAGCATCGGATGGAAGTCTGC
GCAAAGTGTTTGTTGAAGAATCTGACATGCGTATCAAACGCCTGGCGAGA
AAGGCCGGTGCGCTTGTCGTGTTCTTAGTTGATGCCAGCGGTTCGATGGC
ATTGAATAGGATGAACGCGGCAAAAGGTGCTGCGATTCGATTGTTGACAG
AGGCCTATCAGACGAGAGACAAGGTATCCCTTATTCCTTTCCAGGGCAAT
CGAGCCGATGTTGTTCTACCTCCGACAAAGAGCGTCACGATGGCAAAGAA
ACGTTTGGAGACGATGCCTTGTGGAGGAGGTTCGCCATTGGCTCACGGTC
TGATGCAGGCCGTGCGAGTTGGAGTCAACGCACAGAAGAGCGGGGACATT
GGAAAAGTTATCGTAGTGTGCATCTCTGACGGCCGGGCCAATGTACCTCT
AGCGATTAGTGAAGGTGAAGAACTGGAAGAGAAGATGAGCAAAGCTGATC
TCAAGCAAGAGACGTTAAATATTGCGAAACAGATAGCAGCTATTCCAGGC
ATTGAGTTATTGTGCATTGATACTGAGAACAAATTTGTGAGCACCGGTGT
AGCGAAGGAGATTGCAACCAATGCCGGTGGCACTTATCATTCCTTGCCGA
AAGCCACTGACGCAGCAGTCGCCGGTGTGGCCAGTTCTGCTATTGAGGCG
ATGAAGGCATAG

protein sequence of Gcaud7572.t1

>Gcaud7572.t1 ID=Gcaud7572.t1|Name=Gcaud7572.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=754bp
MSPSAPFPCPCPSAFVPSAPLAPRRRRPRAARHCAPLCTLSAPDPQTNTS
FVTPAQRAAAAAALEQSQDVAQPPGRAEQDSSRVFPLAAIVGQDFVKLSL
LLAAVNARISGVGISGRRGTAKSVMARAIHALLPPIEVVTGSYFNEDPPP
LSDTAAITNDEPDPNRTVIPAPFVQVPLNVTEDRLIGSVDVEQSVRKGET
VFQPGLLASAHRGVLYIDELNLLDDGLANILLEVISSGVVRIEREGLSVS
HPCRPLVIATYNPEEGLVRPHLLDRLAINLSVDAVPLSMEQRVAAVESAT
SFSDDPTAFVSRVFEETDQMSTNIVLAREYLQDVSLSNEQLSYLVTEAVR
AACQGHRAELFAMEVAKAAAALDGRERVSAEDLKTAVRLAILPRSLVMNE
SQMEPEMDAPPPPPPPPPQNQDEEVDDELQEEEDDSQDQDQQEEQEEEAP
ELPEEFMFDPEGVVMDPELLEFSKSQKQGKAGGRGLVFSQDRGRYIKAML
PRGGTQRLAVDATLRAAAPFQKGRRARASDGSLRKVFVEESDMRIKRLAR
KAGALVVFLVDASGSMALNRMNAAKGAAIRLLTEAYQTRDKVSLIPFQGN
RADVVLPPTKSVTMAKKRLETMPCGGGSPLAHGLMQAVRVGVNAQKSGDI
GKVIVVCISDGRANVPLAISEGEELEEKMSKADLKQETLNIAKQIAAIPG
IELLCIDTENKFVSTGVAKEIATNAGGTYHSLPKATDAAVAGVASSAIEA
MKA*

mRNA from alignment at NODE_1149_length_13302_cov_3.963742:4097..6358+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7572.t1 ID=Gcaud7572.t1|Name=Gcaud7572.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2262bp|location=Sequence derived from alignment at NODE_1149_length_13302_cov_3.963742:4097..6358+ (Gracilaria caudata M_176_S67 male)
ATGTCACCGTCGGCCCCCTTCCCGTGCCCGTGTCCGTCTGCATTCGTGCC
CTCCGCCCCACTCGCTCCGCGTCGCCGCCGTCCGCGCGCCGCGCGCCATT
GCGCCCCGCTCTGCACTCTCTCCGCACCCGACCCACAGACCAACACCTCC
TTCGTCACCCCCGCGCAGCGTGCCGCCGCCGCCGCCGCGCTCGAGCAATC
TCAGGATGTCGCGCAGCCCCCTGGTCGCGCAGAGCAGGACTCTTCGCGCG
TGTTCCCGTTGGCCGCCATAGTTGGACAGGATTTTGTCAAGTTGTCGCTT
CTGTTGGCCGCCGTCAATGCGCGAATTTCTGGCGTTGGTATCAGCGGGCG
CCGTGGGACGGCCAAGTCGGTCATGGCACGCGCCATTCATGCGCTCTTAC
CACCTATTGAGGTTGTGACCGGCAGCTATTTCAATGAGGATCCACCGCCT
CTTTCCGACACTGCCGCAATCACCAATGATGAGCCGGATCCAAATCGTAC
TGTCATCCCCGCACCATTTGTGCAGGTCCCGCTCAATGTCACTGAAGATC
GTTTGATTGGTTCCGTGGACGTGGAGCAGTCTGTCAGGAAAGGAGAGACA
GTCTTTCAGCCGGGGCTGTTAGCGAGCGCTCATCGCGGTGTGCTTTACAT
TGACGAGCTCAATCTTCTCGATGACGGCTTGGCAAACATCCTTCTCGAAG
TAATATCAAGCGGCGTTGTGCGTATTGAACGTGAGGGCTTGTCTGTATCT
CACCCATGTCGTCCTCTCGTCATTGCAACCTACAACCCAGAGGAAGGTCT
CGTGCGTCCGCACTTGCTCGATCGCCTGGCAATCAATCTTTCAGTAGATG
CCGTCCCACTTTCCATGGAACAAAGAGTAGCAGCCGTTGAATCGGCCACC
AGCTTCAGCGATGATCCCACTGCGTTTGTGTCCCGCGTATTTGAAGAGAC
CGATCAAATGTCTACTAATATTGTTCTTGCACGCGAATACTTGCAAGATG
TTTCTCTATCCAATGAACAACTTTCCTATCTTGTGACGGAGGCAGTGCGG
GCTGCGTGTCAGGGTCACCGTGCCGAGCTGTTTGCGATGGAGGTTGCGAA
AGCGGCCGCGGCTTTGGACGGCAGGGAGAGGGTTTCTGCTGAAGATCTCA
AGACCGCTGTACGACTTGCCATTCTCCCGCGCTCACTGGTTATGAACGAA
AGTCAGATGGAACCGGAAATGGATGCCccgccaccaccgccaccaccacc
gccccaGAATCAGGACGAAGAGGTTGACGATGAGCTTCAGgaggaagaag
acgacagtcaagaccaagatcagcaagaagaacaggaagaggaagCTCCA
GAGCTTCCTGAAGAGTTCATGTTTGATCCCGAGGGGGTAGTTATGGATCC
TGAGCTCCTTGAATTCAGCAAGTCACAAAAGCAAGGTAAAGCGGGTGGAC
GCGGTCTCGTGTTCTCCCAGGATCGCGGGCGCTATATAAAGGCAATGTTG
CCGCGTGGAGGAACTCAGCGACTTGCCGTCGACGCGACGTTACGTGCCGC
TGCTCCCTTCCAGAAAGGGAGACGTGCAAGAGCATCGGATGGAAGTCTGC
GCAAAGTGTTTGTTGAAGAATCTGACATGCGTATCAAACGCCTGGCGAGA
AAGGCCGGTGCGCTTGTCGTGTTCTTAGTTGATGCCAGCGGTTCGATGGC
ATTGAATAGGATGAACGCGGCAAAAGGTGCTGCGATTCGATTGTTGACAG
AGGCCTATCAGACGAGAGACAAGGTATCCCTTATTCCTTTCCAGGGCAAT
CGAGCCGATGTTGTTCTACCTCCGACAAAGAGCGTCACGATGGCAAAGAA
ACGTTTGGAGACGATGCCTTGTGGAGGAGGTTCGCCATTGGCTCACGGTC
TGATGCAGGCCGTGCGAGTTGGAGTCAACGCACAGAAGAGCGGGGACATT
GGAAAAGTTATCGTAGTGTGCATCTCTGACGGCCGGGCCAATGTACCTCT
AGCGATTAGTGAAGGTGAAGAACTGGAAGAGAAGATGAGCAAAGCTGATC
TCAAGCAAGAGACGTTAAATATTGCGAAACAGATAGCAGCTATTCCAGGC
ATTGAGTTATTGTGCATTGATACTGAGAACAAATTTGTGAGCACCGGTGT
AGCGAAGGAGATTGCAACCAATGCCGGTGGCACTTATCATTCCTTGCCGA
AAGCCACTGACGCAGCAGTCGCCGGTGTGGCCAGTTCTGCTATTGAGGCG
ATGAAGGCATAG

Coding sequence (CDS) from alignment at NODE_1149_length_13302_cov_3.963742:4097..6358+

>Gcaud7572.t1 ID=Gcaud7572.t1|Name=Gcaud7572.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2262bp|location=Sequence derived from alignment at NODE_1149_length_13302_cov_3.963742:4097..6358+ (Gracilaria caudata M_176_S67 male)
ATGTCACCGTCGGCCCCCTTCCCGTGCCCGTGTCCGTCTGCATTCGTGCC
CTCCGCCCCACTCGCTCCGCGTCGCCGCCGTCCGCGCGCCGCGCGCCATT
GCGCCCCGCTCTGCACTCTCTCCGCACCCGACCCACAGACCAACACCTCC
TTCGTCACCCCCGCGCAGCGTGCCGCCGCCGCCGCCGCGCTCGAGCAATC
TCAGGATGTCGCGCAGCCCCCTGGTCGCGCAGAGCAGGACTCTTCGCGCG
TGTTCCCGTTGGCCGCCATAGTTGGACAGGATTTTGTCAAGTTGTCGCTT
CTGTTGGCCGCCGTCAATGCGCGAATTTCTGGCGTTGGTATCAGCGGGCG
CCGTGGGACGGCCAAGTCGGTCATGGCACGCGCCATTCATGCGCTCTTAC
CACCTATTGAGGTTGTGACCGGCAGCTATTTCAATGAGGATCCACCGCCT
CTTTCCGACACTGCCGCAATCACCAATGATGAGCCGGATCCAAATCGTAC
TGTCATCCCCGCACCATTTGTGCAGGTCCCGCTCAATGTCACTGAAGATC
GTTTGATTGGTTCCGTGGACGTGGAGCAGTCTGTCAGGAAAGGAGAGACA
GTCTTTCAGCCGGGGCTGTTAGCGAGCGCTCATCGCGGTGTGCTTTACAT
TGACGAGCTCAATCTTCTCGATGACGGCTTGGCAAACATCCTTCTCGAAG
TAATATCAAGCGGCGTTGTGCGTATTGAACGTGAGGGCTTGTCTGTATCT
CACCCATGTCGTCCTCTCGTCATTGCAACCTACAACCCAGAGGAAGGTCT
CGTGCGTCCGCACTTGCTCGATCGCCTGGCAATCAATCTTTCAGTAGATG
CCGTCCCACTTTCCATGGAACAAAGAGTAGCAGCCGTTGAATCGGCCACC
AGCTTCAGCGATGATCCCACTGCGTTTGTGTCCCGCGTATTTGAAGAGAC
CGATCAAATGTCTACTAATATTGTTCTTGCACGCGAATACTTGCAAGATG
TTTCTCTATCCAATGAACAACTTTCCTATCTTGTGACGGAGGCAGTGCGG
GCTGCGTGTCAGGGTCACCGTGCCGAGCTGTTTGCGATGGAGGTTGCGAA
AGCGGCCGCGGCTTTGGACGGCAGGGAGAGGGTTTCTGCTGAAGATCTCA
AGACCGCTGTACGACTTGCCATTCTCCCGCGCTCACTGGTTATGAACGAA
AGTCAGATGGAACCGGAAATGGATGCCccgccaccaccgccaccaccacc
gccccaGAATCAGGACGAAGAGGTTGACGATGAGCTTCAGgaggaagaag
acgacagtcaagaccaagatcagcaagaagaacaggaagaggaagCTCCA
GAGCTTCCTGAAGAGTTCATGTTTGATCCCGAGGGGGTAGTTATGGATCC
TGAGCTCCTTGAATTCAGCAAGTCACAAAAGCAAGGTAAAGCGGGTGGAC
GCGGTCTCGTGTTCTCCCAGGATCGCGGGCGCTATATAAAGGCAATGTTG
CCGCGTGGAGGAACTCAGCGACTTGCCGTCGACGCGACGTTACGTGCCGC
TGCTCCCTTCCAGAAAGGGAGACGTGCAAGAGCATCGGATGGAAGTCTGC
GCAAAGTGTTTGTTGAAGAATCTGACATGCGTATCAAACGCCTGGCGAGA
AAGGCCGGTGCGCTTGTCGTGTTCTTAGTTGATGCCAGCGGTTCGATGGC
ATTGAATAGGATGAACGCGGCAAAAGGTGCTGCGATTCGATTGTTGACAG
AGGCCTATCAGACGAGAGACAAGGTATCCCTTATTCCTTTCCAGGGCAAT
CGAGCCGATGTTGTTCTACCTCCGACAAAGAGCGTCACGATGGCAAAGAA
ACGTTTGGAGACGATGCCTTGTGGAGGAGGTTCGCCATTGGCTCACGGTC
TGATGCAGGCCGTGCGAGTTGGAGTCAACGCACAGAAGAGCGGGGACATT
GGAAAAGTTATCGTAGTGTGCATCTCTGACGGCCGGGCCAATGTACCTCT
AGCGATTAGTGAAGGTGAAGAACTGGAAGAGAAGATGAGCAAAGCTGATC
TCAAGCAAGAGACGTTAAATATTGCGAAACAGATAGCAGCTATTCCAGGC
ATTGAGTTATTGTGCATTGATACTGAGAACAAATTTGTGAGCACCGGTGT
AGCGAAGGAGATTGCAACCAATGCCGGTGGCACTTATCATTCCTTGCCGA
AAGCCACTGACGCAGCAGTCGCCGGTGTGGCCAGTTCTGCTATTGAGGCG
ATGAAGGCATAG