Gcaud7272.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7272.t1
Unique NameGcaud7272.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length184
Homology
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BLAST of Gcaud7272.t1 vs. uniprot
Match: A0A2V3IKC0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKC0_9FLOR)

HSP 1 Score: 91.7 bits (226), Expect = 7.240e-20
Identity = 87/191 (45.55%), Postives = 112/191 (58.64%), Query Frame = 0 
Query:    1 MPSASRGRQGQPVVYSVDAHREFVTGFRQRKLQRRQKAQKLAAEKXXXXXXXXXXXXXXXFRANREKIQVDSEEESVDGDAS-IQSTQFRGADGVVTAVVQPLSFGKPATFPQQPQQTVTPKSQ-------TGSQQSESTKGTKSLPAKLGVVKMTKKSWNRKISYTHMLSKGNLRKAKLRRRREARKNAS 183
            MPS SR +QG PVVYS +AHR+FVTGFR+                XXXXXXXXXXXXXXX                  G+ S ++ST+F+ ADG VTA+VQP+   + A   ++ +    PK +       T   + +ST    +  +KLGVVK +KK   RK S+TH+LSKG+LRKAKLRRRREAR  +S
Sbjct:    1 MPSISRKQQGPPVVYSAEAHRQFVTGFRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEQSQVKSTEFQCADGTVTAIVQPMDTAQSAYLLKKNEVEDHPKEKGSEEKVATSKDEEKSTNEKSTSASKLGVVKPSKKIGKRKTSFTHLLSKGHLRKAKLRRRREARHKSS 191
The following BLAST results are available for this feature:
BLAST of Gcaud7272.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IKC0_9FLOR7.240e-2045.55Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 28..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 166..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..136
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 163..183
IPR019186Nucleolar protein 12PFAMPF09805Nop25coord: 10..78
e-value: 1.7E-11
score: 44.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_513_length_23321_cov_4.687990contigNODE_513_length_23321_cov_4.687990:12075..12626 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7272.t1Gcaud7272.t1Gracilaria caudata M_176_S67 malemRNANODE_513_length_23321_cov_4.687990 12075..12626 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7272.t1 ID=Gcaud7272.t1|Name=Gcaud7272.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=184bp
MPSASRGRQGQPVVYSVDAHREFVTGFRQRKLQRRQKAQKLAAEKQKKER
REERKQRRDVFRANREKIQVDSEEESVDGDASIQSTQFRGADGVVTAVVQ
PLSFGKPATFPQQPQQTVTPKSQTGSQQSESTKGTKSLPAKLGVVKMTKK
SWNRKISYTHMLSKGNLRKAKLRRRREARKNAS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019186Nucleolar_protein_12