Gcaud2078.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2078.t1
Unique NameGcaud2078.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length298
Homology
BLAST of Gcaud2078.t1 vs. uniprot
Match: A0A2V3IX46_9FLOR (Nucleoporin NUP53 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX46_9FLOR)

HSP 1 Score: 438 bits (1126), Expect = 7.380e-153
Identity = 224/296 (75.68%), Postives = 248/296 (83.78%), Query Frame = 0
Query:    1 MFSSPTSKREDPPVRDRLPNYLLSANLTPNPEDQPSASFYTPSKPTAQRRLSSRTETPPIFAPRTPLTFNDRLRTDKPLEEQQRATRAFTPSSKPRTPHVPPNKSLLDTGPPSVRVLRSPSASPGTSLTPSSLSARTPTLGPQDRWITVFGFAPAMEAQALREFRRHGEIVRTIPGKGNWVHILYRAPLQAQVALQRPWRVLAGTETMVGAVPCTEPNVAKLADEQIEKGMLIASPGAAHVSPFSNTLPLPSASPINPLKTPSTMLRRDNHASTTPTIIRTPQRQSGIFDFLSGLY 296
            MF SP++ R+D    +RLPNYLLS++ TP  +   S  F TP+K T QRRLS+R E P +FA RTPLTFNDRLR D+P ++   A+R F PS+KPRTPHVPPNKSLLDTGPPSVRVLRSPSASP TSLTP+SLSARTPTLGPQDRWITVFGF PAMEAQALREFRRHGEIVRT+PGKGNWVHILYR PLQAQVALQRPWR+LAGTETMVGA+PCTEPNVAKLADEQIEKGMLIASP  A  +PF    P PSA+PIN LKTPSTMLRR+    + PT+IRTPQRQSGIFDF SG Y
Sbjct:    1 MFPSPSNARDDDHTTERLPNYLLSSSATPALDQPSSHLFQTPAKYTPQRRLSTRPEAPQLFARRTPLTFNDRLRPDRP-DDHSTASRTFMPSTKPRTPHVPPNKSLLDTGPPSVRVLRSPSASPATSLTPNSLSARTPTLGPQDRWITVFGFGPAMEAQALREFRRHGEIVRTMPGKGNWVHILYRTPLQAQVALQRPWRILAGTETMVGAMPCTEPNVAKLADEQIEKGMLIASPSVATSAPFGTPAPPPSATPINSLKTPSTMLRREPATVSEPTVIRTPQRQSGIFDFFSGFY 295          
BLAST of Gcaud2078.t1 vs. uniprot
Match: M2Y900_GALSU (RRM Nup35-type domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y900_GALSU)

HSP 1 Score: 99.0 bits (245), Expect = 1.570e-20
Identity = 55/119 (46.22%), Postives = 77/119 (64.71%), Query Frame = 0
Query:  138 PTLGPQDR----WITVFGFAPAMEAQALREFRRHGEIVRTIPGKGNWVHILYRAPLQAQVALQRPWRVLAGTETMVGAVPCTEPNVAKLADEQI----EKGMLIASPGAAHVSPFSNTL 248
            P+L P+      W+TVFGF P+++A  LREFR +GEIVR IPGKGNW+HI YR  LQAQ+A  +   ++A T TMVGA+PC+E  +  L +E I    +KG +  +    ++S F N +
Sbjct:  143 PSLSPRSEGTSCWVTVFGFGPSLQAAVLREFRNYGEIVRYIPGKGNWMHICYRTLLQAQMATGKRIHMVAAT-TMVGAIPCSEQEI--LREESISTPADKGSVSKT---RYISNFGNNI 255          
BLAST of Gcaud2078.t1 vs. uniprot
Match: A0A7S0G7K2_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G7K2_9RHOD)

HSP 1 Score: 95.9 bits (237), Expect = 4.690e-19
Identity = 53/102 (51.96%), Postives = 66/102 (64.71%), Query Frame = 0
Query:  119 SPSASPGTS--------LTPSSLSARTPTLGPQDRWITVFGFAPAMEAQALREFRRHGEIVRTIPGKGNWVHILYRAPLQAQVALQRPWRVLAGTETMVGAV 212
            SP+ S GT+        LT  + S  TP     DRW+TVFGF  +M++  LREFR HGEI R + GKGNW+HILYR  LQAQVAL R  R++ G ET+VG +
Sbjct:  172 SPATSRGTTSANRTRFNLTSPTASMGTPDPETADRWVTVFGFGQSMQSLILREFRNHGEIDRHVSGKGNWMHILYRTALQAQVALSRRVRLIGG-ETLVGVI 272          
BLAST of Gcaud2078.t1 vs. uniprot
Match: A0A7J7IF51_9RHOD (Nucleoporin n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IF51_9RHOD)

HSP 1 Score: 85.9 bits (211), Expect = 1.750e-15
Identity = 55/135 (40.74%), Postives = 72/135 (53.33%), Query Frame = 0
Query:  101 PPNKSLLDT-----------GPPSVRVLR-----SPSASPGTSLTPSSLSARTPTLGPQDRWITVFGFAPAMEAQALREFRRHGEIVRTIPGKGNWVHILYRAPLQAQVALQRPWRVLAGTETMVGAVPCTEPNV 219
            PPN+S +DT           G P   + R     +P ASP +S T S L       G   RW+TVFGFAP  ++Q LRE R  G+++     KGNW+H+ + +PLQAQ A  R  R L     M+G VPCTEP +
Sbjct:  141 PPNESWMDTAHAAGRHRAETGTPMSNMARGLFTPAPPASPDSSRT-SPLQE-----GELSRWVTVFGFAPGQQSQVLRELRSFGQVLEHRLRKGNWMHVRFESPLQAQAACSRSSR-LVNDAMMIGIVPCTEPEL 268          
BLAST of Gcaud2078.t1 vs. uniprot
Match: M1UT25_CYAM1 (RRM Nup35-type domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1UT25_CYAM1)

HSP 1 Score: 85.9 bits (211), Expect = 1.780e-15
Identity = 54/139 (38.85%), Postives = 70/139 (50.36%), Query Frame = 0
Query:   91 PSSKPRTPHVPPNKSLLDTGPPSVRVLRSPSASPGTSLTPSSLSARTPTLGPQDR-----------WITVFGFAPAMEAQALREFRRHGEIVRTIPGKGNWVHILYRAPLQAQVALQRPWRVLAGTETMVGAVPCTEPN 218
            PS +      PPN S LDT  P    L + + + G +L     +    T    DR           W+TVFGFAP  ++Q LRE R  G ++     KGNW+H+ Y +PLQAQ A  R  R+L    TM+G VPCTEP 
Sbjct:  132 PSVRSAGGRAPPNTSWLDTETPVSSRLGAGAETTGPALARGLFTPGLRTTLDADRSSPLQESELACWVTVFGFAPGQQSQVLRELRSFGPVLEHRLRKGNWMHVRYESPLQAQAACSRSSRLLNDV-TMIGIVPCTEPE 269          
BLAST of Gcaud2078.t1 vs. uniprot
Match: A0A7S1XBP0_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XBP0_9RHOD)

HSP 1 Score: 70.1 bits (170), Expect = 4.270e-10
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 0
Query:  146 WITVFGFAPAMEAQALREFRRHGEIVRTIPGKGNWVHIL 184
            WITVFGF  AM++  LREFR HGEIVR IPGKGNW+HIL
Sbjct:  266 WITVFGFGSAMQSVVLREFRAHGEIVRHIPGKGNWIHIL 304          
BLAST of Gcaud2078.t1 vs. uniprot
Match: UPI000C20E35C (nucleoporin NUP53 n=1 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C20E35C)

HSP 1 Score: 60.1 bits (144), Expect = 9.440e-7
Identity = 39/118 (33.05%), Postives = 63/118 (53.39%), Query Frame = 0
Query:  146 WITVFGFAPAMEAQALREFRRHGEIV-RTIPGKGNWVHILYRAPLQAQVALQRPWRVLAGTETMVGAVPCTEPNVAKLADEQIEKGMLIASPGAAHVSPFSNTLPLPSASPINPLKTP 262
            W+TVFGF P+  +  L +   +G IV +  P +GNW+H+ Y +PL+A  AL    ++++ +  M+G VP    N ++   E +E    +++P  A     S   P PS SP+ P   P
Sbjct:  170 WVTVFGFPPSATSLVLAQLANYGSIVDKKFPTQGNWIHLKYSSPLEANKALALHGKLISNS-IMIGVVPFVNKNKSEN-KENMEND--VSTPVRARSLRQSYITPQPS-SPVVPQNVP 282          
The following BLAST results are available for this feature:
BLAST of Gcaud2078.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3IX46_9FLOR7.380e-15375.68Nucleoporin NUP53 n=1 Tax=Gracilariopsis chorda Ta... [more]
M2Y900_GALSU1.570e-2046.22RRM Nup35-type domain-containing protein n=1 Tax=G... [more]
A0A7S0G7K2_9RHOD4.690e-1951.96Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7J7IF51_9RHOD1.750e-1540.74Nucleoporin n=1 Tax=Cyanidiococcus yangmingshanens... [more]
M1UT25_CYAM11.780e-1538.85RRM Nup35-type domain-containing protein n=2 Tax=c... [more]
A0A7S1XBP0_9RHOD4.270e-1076.92Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
UPI000C20E35C9.440e-733.05nucleoporin NUP53 n=1 Tax=Onthophagus taurus TaxID... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007846RNA-recognition motif (RRM) Nup35-type domainPFAMPF05172Nup35_RRMcoord: 143..215
e-value: 4.7E-12
score: 45.7
IPR007846RNA-recognition motif (RRM) Nup35-type domainPROSITEPS51472RRM_NUP35coord: 141..221
score: 23.035904
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 142..214
e-value: 1.6E-18
score: 68.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..59
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..139
NoneNo IPR availablePANTHERPTHR21527:SF6NUCLEOPORIN NUP35coord: 18..287
NoneNo IPR availableCDDcd12441RRM_Nup53_likecoord: 144..216
e-value: 6.72374E-22
score: 85.3558
IPR017389Nucleoporin, NUP53PANTHERPTHR21527NUCLEOPORIN NUP35coord: 18..287
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 143..216

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_503_length_23508_cov_5.792160contigNODE_503_length_23508_cov_5.792160:18913..19806 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2078.t1Gcaud2078.t1Gracilaria caudata M_176_S67 malemRNANODE_503_length_23508_cov_5.792160 18913..19806 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2078.t1 ID=Gcaud2078.t1|Name=Gcaud2078.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=298bp
MFSSPTSKREDPPVRDRLPNYLLSANLTPNPEDQPSASFYTPSKPTAQRR
LSSRTETPPIFAPRTPLTFNDRLRTDKPLEEQQRATRAFTPSSKPRTPHV
PPNKSLLDTGPPSVRVLRSPSASPGTSLTPSSLSARTPTLGPQDRWITVF
GFAPAMEAQALREFRRHGEIVRTIPGKGNWVHILYRAPLQAQVALQRPWR
VLAGTETMVGAVPCTEPNVAKLADEQIEKGMLIASPGAAHVSPFSNTLPL
PSASPINPLKTPSTMLRRDNHASTTPTIIRTPQRQSGIFDFLSGLYG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007846RRM_NUP35_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR017389Nucleoporin_NUP53
IPR035979RBD_domain_sf