Gcaud2076.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2076.t1
Unique NameGcaud2076.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length425
Homology
BLAST of Gcaud2076.t1 vs. uniprot
Match: A0A2V3J1Z3_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1Z3_9FLOR)

HSP 1 Score: 290 bits (741), Expect = 5.950e-90
Identity = 175/410 (42.68%), Postives = 250/410 (60.98%), Query Frame = 0
Query:    7 WLAKYSCSQPGVQPPNEWSVRGFYDDKFEDHWNLNLSGNTVSLITAIATSFSIILFVDIVFRVNVRAKNGRPRPDVVQRRQVLDNFSNPINLLSIVMRRFATRSTKSED--SRIKSPHHGLSRWT---YVTLVFMGCLTVLVELMFILLATNQNKVFDLRLDAVPIFEFEDRGCEFLQPSAFVNTCDHIPLTEKSGFDSRATIQICSTATV--HPS-IASSLPSSSYFFILLTVMNYGGVQVTIMDRNRASTKETQMGIYVEQSRMFYTGMKDLTPESLLSALLTRLERTNVTVLTNSTSDVGGRSKTLVTVDDHLHRQSLINMVLRTQGTSGILSLVLVDASNVDLRETHLSLSISGEEDDDQKQSYMRNYFNDVTHSIMFPTGKARGVFSLREEILFLDEDPTPLVFF 408
            W+  + CSQ G+   +EW + GFY+DKF D  N NLS N VSLITA+ T+FS+ILF DI++R+ VRA++ R     V R  +L++FSNPINLLS  + +  +R + S           + LSR T   Y     MG LT+ VE +FI LATNQNKV+DL+L+ VPIFEFEDRGC+ +  S   ++C   PLTEK+GFDSRA +QICST ++  +P  +AS+L + +Y  +L  +++  GV VT+M R    T+   + + +E   + Y G+ +++ +S+LSAL  RL R+N TVL          +K  +T DD  +  S+   +      S     V+VD  N+DLRETH SLS+     + +    M  Y +DV  SIMFPTG+ARGV   ++E+L+LDE  TPL ++
Sbjct:   13 WMKTFHCSQKGLDEDSEWDLHGFYEDKFNDPSNFNLSENAVSLITALLTAFSLILFTDIMYRIAVRARSHRVSKKAVFRYHLLNSFSNPINLLSCFIEKLRSRFSASAPVGGTQNLEWNTLSRSTKRTYTAYFLMGLLTIFVEFLFIFLATNQNKVYDLQLE-VPIFEFEDRGCDRIA-SPVTDSCIQQPLTEKAGFDSRAYLQICSTLSIALNPEGVASTLGNPNYGLVLFALLDTDGVDVTVMYRQINMTQSANIAVILEDGDV-YQGLMNVSAKSILSALSNRLRRSNATVL-------DAYAKDNITEDDSAYNLSITEQIGMPDTAS-----VIVDLENLDLRETHASLSLYPNSSEVELNIAMVLYLHDVARSIMFPTGRARGV-KAKDEVLYLDEVETPLAYY 406          
BLAST of Gcaud2076.t1 vs. uniprot
Match: A0A2V3IRV0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRV0_9FLOR)

HSP 1 Score: 267 bits (682), Expect = 4.530e-81
Identity = 159/410 (38.78%), Postives = 235/410 (57.32%), Query Frame = 0
Query:    7 WLAKYSCSQPGVQPPNEWSVRGFYDDKFEDHWNLNLSGNTVSLITAIATSFSIILFVDIVFRVNVRAKNGRPRPDVVQRRQVLDNFSNPINLLSIVMRRF--------ATRSTKSEDSRIKSPHHGLSRWTYVTLVFMGCLTVLVELMFILLATNQNKVFDLRLDAVPIFEFEDRGCEFLQPSAFVNTCDHIPLTEKSGFDSRATIQICSTATVHPSIASSLPSSSYFFILLTVMNYGGVQVTIMDRNRASTKETQMGIYVEQSRMFYTGMKDLTPESLLSALLTRLERTNVTVLTNSTSDVGGRSKTLVTVDDHLHRQSLINMVLRTQGTSGILSLVLVDASNVDLRETHLSLSISGEEDDDQKQSYMRNYFNDVTHSIMFPTGKARGVFSLREEILFLDEDPTPLVFF 408
            W+A Y+CS+ G+   ++W + GFY+DKF D  NLNLS N VSL+TA++ SFS+ILF DIVFR+ VRAK  +    VV RR +L++FSNPINLLS+++ +         +T  T++ + +  +P    S+  +  L+ +G LTV VE +FI LATNQNK++  +LD VP+FEFEDRGCE +  S  +++C     TEK+GF++   +QICS+ TV  ++     S S   +   +++  GV V +  R   + + T +G+ +E   + Y G+++++ +SLL AL  R  R+N T+L     D          +D       ++      Q      + +LV   NVDLRETHLS  +     +      M  Y +DV  SIMFPTG  RGV     EIL+LDE  TPL  +
Sbjct:   21 WMATYNCSRKGLGHYSKWDLHGFYEDKFNDPLNLNLSENAVSLLTALSCSFSLILFTDIVFRIAVRAKTNQVSKQVVFRRHLLNSFSNPINLLSVLVNKLQSKQSASTSTEGTQNLEWKALTPS---SKRNFTLLLLLGLLTVFVEFLFIFLATNQNKMYAFQLDEVPVFEFEDRGCERIA-SPVIDSCIQESWTEKAGFNTHGYLQICSSQTVSAAVEDEKLSKSNGIVSFVILDTDGVDVIVRYREINAVERTTIGVILESGSV-YQGLQNVSSKSLLFALSNRFRRSNATILDTFAQD---------NMDSGA---GILENPPTEQNAKPDAASILVSLENVDLRETHLSHILHPNSSEGDLNLAMVIYLHDVARSIMFPTGTGRGVRLRGREILYLDEVETPLAHY 413          
BLAST of Gcaud2076.t1 vs. uniprot
Match: A0A2V3J847_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J847_9FLOR)

HSP 1 Score: 255 bits (652), Expect = 7.670e-77
Identity = 162/403 (40.20%), Postives = 221/403 (54.84%), Query Frame = 0
Query:   11 YSCSQPGVQPPNEWSVRGFYDDKFEDHWNLNLSGNTVSLITAIATSFSIILFVDIVFRVNVRAKNGRPRPDVVQRRQVLDNFSNPINLLSIVMRRFATRSTKSEDSRIKSPHHGLSRW---TYVTLVFMGCLTVLVELMFILLATNQNKVFDLRLDAVPIFEFEDRGCEFLQPSAFVNTCDHIPLTEKSGFDSRATIQICSTATVHPSIASSLPSSSYFFILLTVMNYGGVQVTIMDRNRASTKETQMGIYVEQSRMFYTGMKDLTPESLLSALLTRLERTNVTVLTNSTSDVGGR-SKTLVTVDDHLHRQSLINMVLRTQGTSGILSLVLVDASNVDLRETHL-SLSISGEEDDDQKQSYMRNYFNDVTHSIMFPTGKARGVFSLREEILFLDEDPTPLVFF 408
            + CS+PG+   ++WSVRGFY++KF D  N NLS N+VSLITAIATSFS++LF DIVFR  VRAK       V+ RR VL+ FSNP+ L  +                        SR    TY  L  MG LTV  E +FI LATNQN V+D++LD VPIFEF+DRGCEF+ P  + N C  +PLTEK GF+ R  +QICS+       A+      +   L+  +N   V  T+  R   ++   +MG Y+ +S   Y GM+  + E + +ALL RLERTNVTVL+    +   R  + + +    L R        +      +++ VL D   VDL ET + S+       ++++   M  Y   +  SIMFPTGK RGVF   +  L+LDE  +PLV +
Sbjct:   17 FFCSRPGLDEASQWSVRGFYENKFNDPLNFNLSENSVSLITAIATSFSLVLFNDIVFRALVRAKINEVNKHVILRRHVLETFSNPLTLFLLXXXXXXXXXXXXXXXXXXXXXGSSSRKAKITYAALCAMGLLTVFAEFVFIFLATNQNGVYDVQLDGVPIFEFDDRGCEFVGPPTW-NACIQVPLTEKPGFNPRGALQICSSVVFRGDNATD---GQHDVHLILALNEYMVTATVNYREWTTSMNFRMG-YMNESGAMYVGMQSTSAEQIKAALLHRLERTNVTVLSAFPEENVARFGEDMESTKWGLRRPERTER--QASQAQALVAGVLGDVRLVDLNETTIGSVLFQDSSSEEERVHLMHQYLQALIRSIMFPTGKGRGVFFSEDSTLYLDEHTSPLVSY 412          
BLAST of Gcaud2076.t1 vs. uniprot
Match: A0A2V3ICE5_9FLOR (Uncharacterized protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICE5_9FLOR)

HSP 1 Score: 220 bits (560), Expect = 2.460e-63
Identity = 141/394 (35.79%), Postives = 211/394 (53.55%), Query Frame = 0
Query:   24 WSVRGFYDDKFEDHWNLNLSGNTVSLITAIATSFSIILFVDIVFRVNVRAKNGRPRPDVVQRRQVLDNFSNPINLLSIVMRRFATRSTKSEDSRIKSPHHGLSRWTYVTLVFMGCLTVLVELMFILLATNQNKVFDLRLDAVPIFEFEDRGCEFLQPSAFVNTCDHIP-LTEKSGFDSRATIQICSTATVHPSIASSLPSSSYF------FILLTVMNYGGVQVTIMDRNRASTKETQMGIYVEQSRMFYTGMKDLTPESLLSALLTRLERTNVTVLTNSTSDVGGRSKTLVTVDDHLHRQSLINMVLRTQGTSGILSLVLVDASNVDLRETHLSLSISGEEDDDQKQSY--MRNYFNDVTHSIMFPTGKARGVFSLREEILFLDEDPTPLVFF 408
            W VRGFYDDKF D  N NL  NTVS++TAI TSFS++LFVDI+FRV+VRAKNG     VV RR ++DN SNPI L + V+R   T+   + +     P     +WTY +LV +G + V +E +FI L+T Q KVFD+ L  VP+FEF+DRGCE + P   +NTC+++  + EK+GF+SRA IQ C+  +     AS L +   F      FI L +    G+  T+ D         ++G+ +  +  F++ M +   E + + + +RL R NVTV T    ++   + T+                    G   +  L L+D S +D+  T L  +  G  D      +  M  +     +S++ P+G+ARG +S  +   +LD    PL ++
Sbjct:   17 WDVRGFYDDKFNDPMNFNLGENTVSILTAITTSFSLLLFVDIIFRVSVRAKNGEVSKRVVLRRHIVDNCSNPITLCATVLRGIRTKRPWNRNQAF-GPQLTSGKWTYASLVVLGFVAVCMEFIFIFLSTGQKKVFDVHLGTVPVFEFKDRGCESVFPVP-INTCNNMGGIAEKAGFESRAYIQACTGYS-----ASLLKTGGKFGESGEAFISLIINRVVGITATLRDDATVFDMYNKVGVVMMDNGAFFSAMTNQGEEEVANVVSSRLNRANVTVRTWEIVNISSPTSTV-------------------DGGRNMALLFLLDISKLDVTGTSL-WNAPGVSDGPWNDPHRVMPVFLMGAINSVIVPSGQARGEYSNEDRFFYLDMIEDPLAYY 383          
The following BLAST results are available for this feature:
BLAST of Gcaud2076.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J1Z3_9FLOR5.950e-9042.68Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IRV0_9FLOR4.530e-8138.78Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J847_9FLOR7.670e-7740.20Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ICE5_9FLOR2.460e-6335.79Uncharacterized protein n=2 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 224..242
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 243..424
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 68..127
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 128..151
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..46
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 47..67
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 152..223
NoneNo IPR availableTMHMMTMhelixcoord: 128..150
NoneNo IPR availableTMHMMTMhelixcoord: 47..69
NoneNo IPR availableTMHMMTMhelixcoord: 216..238

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_503_length_23508_cov_5.792160contigNODE_503_length_23508_cov_5.792160:8787..10190 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2076.t1Gcaud2076.t1Gracilaria caudata M_176_S67 malemRNANODE_503_length_23508_cov_5.792160 8787..10190 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2076.t1 ID=Gcaud2076.t1|Name=Gcaud2076.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=425bp
MVNGTQWLAKYSCSQPGVQPPNEWSVRGFYDDKFEDHWNLNLSGNTVSLI
TAIATSFSIILFVDIVFRVNVRAKNGRPRPDVVQRRQVLDNFSNPINLLS
IVMRRFATRSTKSEDSRIKSPHHGLSRWTYVTLVFMGCLTVLVELMFILL
ATNQNKVFDLRLDAVPIFEFEDRGCEFLQPSAFVNTCDHIPLTEKSGFDS
RATIQICSTATVHPSIASSLPSSSYFFILLTVMNYGGVQVTIMDRNRAST
KETQMGIYVEQSRMFYTGMKDLTPESLLSALLTRLERTNVTVLTNSTSDV
GGRSKTLVTVDDHLHRQSLINMVLRTQGTSGILSLVLVDASNVDLRETHL
SLSISGEEDDDQKQSYMRNYFNDVTHSIMFPTGKARGVFSLREEILFLDE
DPTPLVFFKDKEITNVEDMGERGI*
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