Gcaud2076.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2076.t1
Unique Name	Gcaud2076.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	425

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_503_length_23508_cov_5.792160	contig	NODE_503_length_23508_cov_5.792160:8787..10190 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2076	Gcaud2076	Gracilaria caudata M_176_S67 male	gene	NODE_503_length_23508_cov_5.792160 8787..10190 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2076.t1	Gcaud2076.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_503_length_23508_cov_5.792160 8787..10190 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2076.t1.start1	Gcaud2076.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_503_length_23508_cov_5.792160 8787..8789 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2076.t1.CDS1	Gcaud2076.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_503_length_23508_cov_5.792160 8787..10003 +
Gcaud2076.t1.CDS2	Gcaud2076.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_503_length_23508_cov_5.792160 10133..10190 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2076.t1.exon1	Gcaud2076.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_503_length_23508_cov_5.792160 8787..10003 +
Gcaud2076.t1.exon2	Gcaud2076.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_503_length_23508_cov_5.792160 10133..10190 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2076.t1.intron1	Gcaud2076.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_503_length_23508_cov_5.792160 10004..10132 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2076.t1.stop1	Gcaud2076.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_503_length_23508_cov_5.792160 10188..10190 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_503_length_23508_cov_5.792160:8787..10190+
coding sequence from alignment at NODE_503_length_23508_cov_5.792160:8787..10190+

mRNA sequence

>Gcaud2076.t1 ID=Gcaud2076.t1|Name=Gcaud2076.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=425bp
MVNGTQWLAKYSCSQPGVQPPNEWSVRGFYDDKFEDHWNLNLSGNTVSLI
TAIATSFSIILFVDIVFRVNVRAKNGRPRPDVVQRRQVLDNFSNPINLLS
IVMRRFATRSTKSEDSRIKSPHHGLSRWTYVTLVFMGCLTVLVELMFILL
ATNQNKVFDLRLDAVPIFEFEDRGCEFLQPSAFVNTCDHIPLTEKSGFDS
RATIQICSTATVHPSIASSLPSSSYFFILLTVMNYGGVQVTIMDRNRAST
KETQMGIYVEQSRMFYTGMKDLTPESLLSALLTRLERTNVTVLTNSTSDV
GGRSKTLVTVDDHLHRQSLINMVLRTQGTSGILSLVLVDASNVDLRETHL
SLSISGEEDDDQKQSYMRNYFNDVTHSIMFPTGKARGVFSLREEILFLDE
DPTPLVFFKDKEITNVEDMGERGI*

spliced messenger RNA

>Gcaud2076.t1 ID=Gcaud2076.t1|Name=Gcaud2076.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1275bp|location=Sequence derived from alignment at NODE_503_length_23508_cov_5.792160:8787..10190+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAATGGAACGCAGTGGTTAGCCAAATATTCCTGTTCACAACCTGG
TGTGCAGCCGCCAAACGAATGGAGTGTACGCGGTTTCTACGACGACAAGT
TTGAAGATCATTGGAACTTGAATCTTAGCGGAAACACGGTGTCGCTCATC
ACAGCCATTGCTACTTCCTTTTCGATCATATTATTCGTCGACATCGTTTT
CCGAGTTAATGTTCGCGCCAAAAACGGTCGGCCTAGACCTGACGTGGTGC
AGCGACGCCAAGTTCTGGATAACTTCTCCAATCCCATAAATCTGCTTTCA
ATTGTGATGAGAAGATTCGCGACTCGTTCAACGAAGTCTGAAGATAGCCG
CATCAAGAGCCCTCACCATGGGCTGTCAAGGTGGACATATGTTACTTTGG
TTTTCATGGGCTGTTTGACTGTTTTGGTCGAGCTCATGTTCATCTTGCTT
GCAACGAATCAAAACAAAGTGTTTGACCTTCGCCTTGATGCAGTTCCGAT
ATTTGAGTTTGAAGATCGAGGATGCGAATTCCTTCAACCGTCTGCGTTCG
TCAATACTTGTGATCATATTCCTCTCACGGAGAAATCTGGATTCGATTCG
CGGGCCACCATACAAATATGTTCTACAGCTACCGTTCATCCCTCAATTGC
CTCTTCGCTTCCCAGCTCATCTTACTTTTTTATTTTGTTGACCGTCATGA
ATTATGGGGGTGTTCAAGTCACGATCATGGATAGAAACAGGGCATCCACT
AAAGAGACACAAATGGGAATTTATGTCGAGCAGAGTAGGATGTTCTATAC
TGGGATGAAAGATTTGACACCTGAATCGTTGCTGTCTGCTTTACTAACGC
GTTTGGAAAGAACAAATGTTACAGTTCTAACAAATTCTACGTCCGATGTG
GGTGGGCGCTCTAAAACATTGGTAACGGTGGATGACCATTTACACCGGCA
AAGTCTAATCAACATGGTTCTGAGGACACAAGGTACCAGTGGCATCCTTT
CTCTGGTTCTTGTCGATGCAAGTAACGTAGACTTGCGAGAAACTCACCTA
TCGCTTTCAATTAGTGGTGAAGAAGATGATGATCAAAAACAATCTTACAT
GCGCAACTATTTCAATGATGTAACGCATTCTATTATGTTTCCTACTGGGA
AAGCACGTGGAGTATTTTCGCTCCGGGAAGAAATTCTCTTTCTTGACGAG
GACCCGACGCCATTAGTgttcttCAAAGACAAGGAAATAACCAATGTCGA
GGACATGGGAGAGAGGGGGATATGA

protein sequence of Gcaud2076.t1

>Gcaud2076.t1 ID=Gcaud2076.t1|Name=Gcaud2076.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=425bp
MVNGTQWLAKYSCSQPGVQPPNEWSVRGFYDDKFEDHWNLNLSGNTVSLI
TAIATSFSIILFVDIVFRVNVRAKNGRPRPDVVQRRQVLDNFSNPINLLS
IVMRRFATRSTKSEDSRIKSPHHGLSRWTYVTLVFMGCLTVLVELMFILL
ATNQNKVFDLRLDAVPIFEFEDRGCEFLQPSAFVNTCDHIPLTEKSGFDS
RATIQICSTATVHPSIASSLPSSSYFFILLTVMNYGGVQVTIMDRNRAST
KETQMGIYVEQSRMFYTGMKDLTPESLLSALLTRLERTNVTVLTNSTSDV
GGRSKTLVTVDDHLHRQSLINMVLRTQGTSGILSLVLVDASNVDLRETHL
SLSISGEEDDDQKQSYMRNYFNDVTHSIMFPTGKARGVFSLREEILFLDE
DPTPLVFFKDKEITNVEDMGERGI*

mRNA from alignment at NODE_503_length_23508_cov_5.792160:8787..10190+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2076.t1 ID=Gcaud2076.t1|Name=Gcaud2076.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1404bp|location=Sequence derived from alignment at NODE_503_length_23508_cov_5.792160:8787..10190+ (Gracilaria caudata M_176_S67 male)
ATGGTGAATGGAACGCAGTGGTTAGCCAAATATTCCTGTTCACAACCTGG
TGTGCAGCCGCCAAACGAATGGAGTGTACGCGGTTTCTACGACGACAAGT
TTGAAGATCATTGGAACTTGAATCTTAGCGGAAACACGGTGTCGCTCATC
ACAGCCATTGCTACTTCCTTTTCGATCATATTATTCGTCGACATCGTTTT
CCGAGTTAATGTTCGCGCCAAAAACGGTCGGCCTAGACCTGACGTGGTGC
AGCGACGCCAAGTTCTGGATAACTTCTCCAATCCCATAAATCTGCTTTCA
ATTGTGATGAGAAGATTCGCGACTCGTTCAACGAAGTCTGAAGATAGCCG
CATCAAGAGCCCTCACCATGGGCTGTCAAGGTGGACATATGTTACTTTGG
TTTTCATGGGCTGTTTGACTGTTTTGGTCGAGCTCATGTTCATCTTGCTT
GCAACGAATCAAAACAAAGTGTTTGACCTTCGCCTTGATGCAGTTCCGAT
ATTTGAGTTTGAAGATCGAGGATGCGAATTCCTTCAACCGTCTGCGTTCG
TCAATACTTGTGATCATATTCCTCTCACGGAGAAATCTGGATTCGATTCG
CGGGCCACCATACAAATATGTTCTACAGCTACCGTTCATCCCTCAATTGC
CTCTTCGCTTCCCAGCTCATCTTACTTTTTTATTTTGTTGACCGTCATGA
ATTATGGGGGTGTTCAAGTCACGATCATGGATAGAAACAGGGCATCCACT
AAAGAGACACAAATGGGAATTTATGTCGAGCAGAGTAGGATGTTCTATAC
TGGGATGAAAGATTTGACACCTGAATCGTTGCTGTCTGCTTTACTAACGC
GTTTGGAAAGAACAAATGTTACAGTTCTAACAAATTCTACGTCCGATGTG
GGTGGGCGCTCTAAAACATTGGTAACGGTGGATGACCATTTACACCGGCA
AAGTCTAATCAACATGGTTCTGAGGACACAAGGTACCAGTGGCATCCTTT
CTCTGGTTCTTGTCGATGCAAGTAACGTAGACTTGCGAGAAACTCACCTA
TCGCTTTCAATTAGTGGTGAAGAAGATGATGATCAAAAACAATCTTACAT
GCGCAACTATTTCAATGATGTAACGCATTCTATTATGTTTCCTACTGGGA
AAGCACGTGGAGTATTTTCGCTCCGGGAAGAAATTCTCTTTCTTGACGAG
GACCCGACGCCATTAGTGtacagcaatagaccgtggattggtgtggtggt
tagcgtgatcatttgttgcgctttgttgctcatatgggctgtggttgccg
tactcggcatcgaaggcaatgttaacaatctattggcatgggaaaggttc
ttCAAAGACAAGGAAATAACCAATGTCGAGGACATGGGAGAGAGGGGGAT
ATGA

Coding sequence (CDS) from alignment at NODE_503_length_23508_cov_5.792160:8787..10190+

>Gcaud2076.t1 ID=Gcaud2076.t1|Name=Gcaud2076.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1275bp|location=Sequence derived from alignment at NODE_503_length_23508_cov_5.792160:8787..10190+ (Gracilaria caudata M_176_S67 male)
ATGGTGAATGGAACGCAGTGGTTAGCCAAATATTCCTGTTCACAACCTGG
TGTGCAGCCGCCAAACGAATGGAGTGTACGCGGTTTCTACGACGACAAGT
TTGAAGATCATTGGAACTTGAATCTTAGCGGAAACACGGTGTCGCTCATC
ACAGCCATTGCTACTTCCTTTTCGATCATATTATTCGTCGACATCGTTTT
CCGAGTTAATGTTCGCGCCAAAAACGGTCGGCCTAGACCTGACGTGGTGC
AGCGACGCCAAGTTCTGGATAACTTCTCCAATCCCATAAATCTGCTTTCA
ATTGTGATGAGAAGATTCGCGACTCGTTCAACGAAGTCTGAAGATAGCCG
CATCAAGAGCCCTCACCATGGGCTGTCAAGGTGGACATATGTTACTTTGG
TTTTCATGGGCTGTTTGACTGTTTTGGTCGAGCTCATGTTCATCTTGCTT
GCAACGAATCAAAACAAAGTGTTTGACCTTCGCCTTGATGCAGTTCCGAT
ATTTGAGTTTGAAGATCGAGGATGCGAATTCCTTCAACCGTCTGCGTTCG
TCAATACTTGTGATCATATTCCTCTCACGGAGAAATCTGGATTCGATTCG
CGGGCCACCATACAAATATGTTCTACAGCTACCGTTCATCCCTCAATTGC
CTCTTCGCTTCCCAGCTCATCTTACTTTTTTATTTTGTTGACCGTCATGA
ATTATGGGGGTGTTCAAGTCACGATCATGGATAGAAACAGGGCATCCACT
AAAGAGACACAAATGGGAATTTATGTCGAGCAGAGTAGGATGTTCTATAC
TGGGATGAAAGATTTGACACCTGAATCGTTGCTGTCTGCTTTACTAACGC
GTTTGGAAAGAACAAATGTTACAGTTCTAACAAATTCTACGTCCGATGTG
GGTGGGCGCTCTAAAACATTGGTAACGGTGGATGACCATTTACACCGGCA
AAGTCTAATCAACATGGTTCTGAGGACACAAGGTACCAGTGGCATCCTTT
CTCTGGTTCTTGTCGATGCAAGTAACGTAGACTTGCGAGAAACTCACCTA
TCGCTTTCAATTAGTGGTGAAGAAGATGATGATCAAAAACAATCTTACAT
GCGCAACTATTTCAATGATGTAACGCATTCTATTATGTTTCCTACTGGGA
AAGCACGTGGAGTATTTTCGCTCCGGGAAGAAATTCTCTTTCTTGACGAG
GACCCGACGCCATTAGTgttcttCAAAGACAAGGAAATAACCAATGTCGA
GGACATGGGAGAGAGGGGGATATGA