Gcaud2077.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2077.t1
Unique Name	Gcaud2077.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	257

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_503_length_23508_cov_5.792160	contig	NODE_503_length_23508_cov_5.792160:10994..11880 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2077	Gcaud2077	Gracilaria caudata M_176_S67 male	gene	NODE_503_length_23508_cov_5.792160 10994..11880 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2077.t1	Gcaud2077.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_503_length_23508_cov_5.792160 10994..11880 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2077.t1.start1	Gcaud2077.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_503_length_23508_cov_5.792160 10994..10996 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2077.t1.CDS1	Gcaud2077.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_503_length_23508_cov_5.792160 10994..11747 +
Gcaud2077.t1.CDS2	Gcaud2077.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_503_length_23508_cov_5.792160 11864..11880 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2077.t1.exon1	Gcaud2077.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_503_length_23508_cov_5.792160 10994..11747 +
Gcaud2077.t1.exon2	Gcaud2077.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_503_length_23508_cov_5.792160 11864..11880 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2077.t1.intron1	Gcaud2077.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_503_length_23508_cov_5.792160 11748..11863 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2077.t1.stop1	Gcaud2077.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_503_length_23508_cov_5.792160 11878..11880 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_503_length_23508_cov_5.792160:10994..11880+
coding sequence from alignment at NODE_503_length_23508_cov_5.792160:10994..11880+

mRNA sequence

>Gcaud2077.t1 ID=Gcaud2077.t1|Name=Gcaud2077.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=257bp
MQSVSISETQASQWTAKYSCPQPGVESFNEWSVRGFYDDKFDDPWNLNLG
ENVVSLITAIATSFSIILFVDIVFRVHVRAKNSRVRPEVVQRRQVLEDFS
NPINLPSLVFRRITPNRSAESEGSAIWSPYHGLSRWTYGNLIFMGVLIVL
IEYLFIFLATNQTKAYDIRIDAVPIFEFEDRGCEILDPPDAQSCDYVPLT
EKAGFDSRASIQICSANLVYATEKSSLNDSFYFYLEFNVLNVDGVQVTIR
HTFGKN*

spliced messenger RNA

>Gcaud2077.t1 ID=Gcaud2077.t1|Name=Gcaud2077.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=771bp|location=Sequence derived from alignment at NODE_503_length_23508_cov_5.792160:10994..11880+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAGCGTGAGCATTTCGGAAACCCAAGCCTCGCAATGGACAGCCAA
ATATTCTTGTCCCCAACCTGGTGTGGAATCGTTTAACGAATGGAGTGTGC
GCGGTTTCTACGACGACAAGTTTGATGATCCTTGGAACTTGAATCTTGGT
GAGAACGTGGTGTCTCTCATCACAGCCATTGCCACTTCATTTTCGATCAT
TTTGTTCGTCGACATTGTGTTCCGAGTTCATGTGCGAGCCAAAAACTCTC
GGGTGCGACCTGAAGTGGTGCAGCGACGCCAAGTTCTGGAAGACTTCTCC
AACCCCATAAATCTGCCTTCGCTCGTCTTTAGAAGAATCACGCCGAATCG
GTCCGCTGAGTCTGAAGGTAGCGCTATCTGGAGCCCTTATCATGGACTCT
CAAGGTGGACGTACGGGAACTTGATTTTTATGGGCGTTTTAATTGTTTTG
ATTGAGTACCTGTTCATCTTCCTTGCAACGAATCAAACCAAAGCCTATGA
CATTCGAATTGATGCAGTTCCGATATTTGAGTTCGAAGATCGAGGCTGCG
AGATCCTCGACCCGCCTGATGCCCAAAGTTGTGATTACGTTCCTCTCACG
GAAAAGGCGGGATTCGATTCGCGGGCCTCCATACAAATATGCTCTGCAAA
TCTCGTTTATGCCACCGAAAAGTCTTCGCTTAACGACTCATTTTACTTTT
ATCTCGAGTTCAACGTGTTGAATGTTGACGGCGTTCAGGTCACAATAAGG
CATACGTTTGGAAAGAACTAA

protein sequence of Gcaud2077.t1

>Gcaud2077.t1 ID=Gcaud2077.t1|Name=Gcaud2077.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=257bp
MQSVSISETQASQWTAKYSCPQPGVESFNEWSVRGFYDDKFDDPWNLNLG
ENVVSLITAIATSFSIILFVDIVFRVHVRAKNSRVRPEVVQRRQVLEDFS
NPINLPSLVFRRITPNRSAESEGSAIWSPYHGLSRWTYGNLIFMGVLIVL
IEYLFIFLATNQTKAYDIRIDAVPIFEFEDRGCEILDPPDAQSCDYVPLT
EKAGFDSRASIQICSANLVYATEKSSLNDSFYFYLEFNVLNVDGVQVTIR
HTFGKN*

mRNA from alignment at NODE_503_length_23508_cov_5.792160:10994..11880+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2077.t1 ID=Gcaud2077.t1|Name=Gcaud2077.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=887bp|location=Sequence derived from alignment at NODE_503_length_23508_cov_5.792160:10994..11880+ (Gracilaria caudata M_176_S67 male)
ATGCAGAGCGTGAGCATTTCGGAAACCCAAGCCTCGCAATGGACAGCCAA
ATATTCTTGTCCCCAACCTGGTGTGGAATCGTTTAACGAATGGAGTGTGC
GCGGTTTCTACGACGACAAGTTTGATGATCCTTGGAACTTGAATCTTGGT
GAGAACGTGGTGTCTCTCATCACAGCCATTGCCACTTCATTTTCGATCAT
TTTGTTCGTCGACATTGTGTTCCGAGTTCATGTGCGAGCCAAAAACTCTC
GGGTGCGACCTGAAGTGGTGCAGCGACGCCAAGTTCTGGAAGACTTCTCC
AACCCCATAAATCTGCCTTCGCTCGTCTTTAGAAGAATCACGCCGAATCG
GTCCGCTGAGTCTGAAGGTAGCGCTATCTGGAGCCCTTATCATGGACTCT
CAAGGTGGACGTACGGGAACTTGATTTTTATGGGCGTTTTAATTGTTTTG
ATTGAGTACCTGTTCATCTTCCTTGCAACGAATCAAACCAAAGCCTATGA
CATTCGAATTGATGCAGTTCCGATATTTGAGTTCGAAGATCGAGGCTGCG
AGATCCTCGACCCGCCTGATGCCCAAAGTTGTGATTACGTTCCTCTCACG
GAAAAGGCGGGATTCGATTCGCGGGCCTCCATACAAATATGCTCTGCAAA
TCTCGTTTATGCCACCGAAAAGTCTTCGCTTAACGACTCATTTTACTTTT
ATCTCGAGTTCAACGTGTTGAATGTTGACGGCGTTCAGGTCACAATAAGG
CATAGTAACACGACAGTGACCCAGACAACACGAATGGGAGTTTATCTCGA
GCAGAATAGGAAATTTTATATTGGGATGCAAGACGTGAGGCCGGAACCGT
TGATATCTGCTTTGCTAAAGCGTTTGGAAAGAACTAA

Coding sequence (CDS) from alignment at NODE_503_length_23508_cov_5.792160:10994..11880+

>Gcaud2077.t1 ID=Gcaud2077.t1|Name=Gcaud2077.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=771bp|location=Sequence derived from alignment at NODE_503_length_23508_cov_5.792160:10994..11880+ (Gracilaria caudata M_176_S67 male)
ATGCAGAGCGTGAGCATTTCGGAAACCCAAGCCTCGCAATGGACAGCCAA
ATATTCTTGTCCCCAACCTGGTGTGGAATCGTTTAACGAATGGAGTGTGC
GCGGTTTCTACGACGACAAGTTTGATGATCCTTGGAACTTGAATCTTGGT
GAGAACGTGGTGTCTCTCATCACAGCCATTGCCACTTCATTTTCGATCAT
TTTGTTCGTCGACATTGTGTTCCGAGTTCATGTGCGAGCCAAAAACTCTC
GGGTGCGACCTGAAGTGGTGCAGCGACGCCAAGTTCTGGAAGACTTCTCC
AACCCCATAAATCTGCCTTCGCTCGTCTTTAGAAGAATCACGCCGAATCG
GTCCGCTGAGTCTGAAGGTAGCGCTATCTGGAGCCCTTATCATGGACTCT
CAAGGTGGACGTACGGGAACTTGATTTTTATGGGCGTTTTAATTGTTTTG
ATTGAGTACCTGTTCATCTTCCTTGCAACGAATCAAACCAAAGCCTATGA
CATTCGAATTGATGCAGTTCCGATATTTGAGTTCGAAGATCGAGGCTGCG
AGATCCTCGACCCGCCTGATGCCCAAAGTTGTGATTACGTTCCTCTCACG
GAAAAGGCGGGATTCGATTCGCGGGCCTCCATACAAATATGCTCTGCAAA
TCTCGTTTATGCCACCGAAAAGTCTTCGCTTAACGACTCATTTTACTTTT
ATCTCGAGTTCAACGTGTTGAATGTTGACGGCGTTCAGGTCACAATAAGG
CATACGTTTGGAAAGAACTAA