Gcaud9968.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9968.t1
Unique NameGcaud9968.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length627
Homology
BLAST of Gcaud9968.t1 vs. uniprot
Match: A0A2V3J585_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J585_9FLOR)

HSP 1 Score: 653 bits (1684), Expect = 2.720e-227
Identity = 339/553 (61.30%), Postives = 424/553 (76.67%), Query Frame = 0
Query:   68 SQVDKIVQGLADVKNRYERISDEVRTLRELPDDYILGSDISNLFIGSTSTVQDFPLPEAPSFHGLSPREVLAIAEDFMGSMGLSNEIRHSSVNGLNDILIRLRNWISNIKEEAKLLVAAHEDVEVTDVSASLASFVHLLRLARFSVMPALPSIDEPQSPELIPLGTSKETTLDPSLIVNHKVLRSIISEQKCNLGKESFYPYVFVATRGVSVVRNSGLLLPLKLRAIERSYLGWIAIPFTILTKPNQVFDWLKSLLSKLTKSVGRGVKSDENESERNPDQKHSEMSASRAVRRIVPAVRLKSLTDAIGSLFFPSFTQEPCHELFVLMYREVEHDKKFLQERKRAALLKQIRESISQAIDPFAAMKAKQEQSDHNVVAGRKVEDFFHSGRNMKAVCLHLYKDVPWGLKEHYFPSIYVLPATGDLLRLDAVTLFGLISAAITYVRHSESWFSYAFLFGSLVTYVVRVASGWRRASTEYKERIARDKVANTVAQQWAVMDSLGTLAVEEAFAQLAAVFLALQQGNGKCAIDVEREMYKNVSLDAVSSNRWQQWLAD 620
            SQV++I Q LADVKN+Y RISDEVR LR LP+DYILGSD+S+  IGSTSTVQD  LP+APSFHGL+PREVL+I E+FM   GLS E +   V  L ++L+RLR WIS+I +EAKLL    +D   T +++S+ +++HLL+LARFS++P+LP ID+P SP+LIPLG+SKETTLDPSLI+   +L  I+ ++     ++S YPY+F+ATRGVSV R+SGLLL LKLRAIERSYLGWIA PFTI T+ N+V  ++KSL+ K      R  K +             E S S AVRRIVPAVRL+S TDA+ SL FPSFTQEPCHELF LMYREVE +K  +QE+KRAAL KQIRESISQA+DPF+AMKA++E+ + +      +ED        K + L L+KD+PWGL+EHYFPS+YVLPAT DLLRLDA+TLFGLISA ++YVRHSESWFS AFL GS+V+Y++RVASGW RAST Y+E+IAR+K AN VAQQWA +D++ +LA +EAFAQLAAV +A   G+G  A D+ER MYKN SLD  SS +WQQWL+D
Sbjct:   75 SQVNEIAQRLADVKNKYRRISDEVRALRVLPEDYILGSDMSSFHIGSTSTVQDLCLPKAPSFHGLNPREVLSIVEEFMRREGLSREDQSFVVKDLKNVLVRLRAWISDIADEAKLLCTLPDDSGDTRIASSVRAYIHLLQLARFSILPSLPRIDQPPSPDLIPLGSSKETTLDPSLIIEEDLLLDILRQKGYRFEQDSIYPYIFIATRGVSVRRDSGLLLSLKLRAIERSYLGWIAGPFTIFTRTNRVMKFMKSLVVKGKTEETRECKDE------------VEKSMSPAVRRIVPAVRLRSFTDAVSSLLFPSFTQEPCHELFALMYREVERNKNLVQEKKRAALFKQIRESISQAVDPFSAMKAEREKRNLDRQEILPLEDISSPIGQKKRISLQLFKDIPWGLREHYFPSVYVLPATQDLLRLDALTLFGLISALVSYVRHSESWFSTAFLLGSVVSYIIRVASGWIRASTSYREKIAREKSANLVAQQWAAIDAIASLATDEAFAQLAAVLIAQHCGDGSLAEDLERRMYKNKSLDEESSAQWQQWLSD 615          
BLAST of Gcaud9968.t1 vs. uniprot
Match: R7QR24_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QR24_CHOCR)

HSP 1 Score: 357 bits (916), Expect = 2.220e-111
Identity = 222/637 (34.85%), Postives = 349/637 (54.79%), Query Frame = 0
Query:    3 AFLPCPSLPFAHSTKVHQRSQSSRRRQFVVLAKHGVNDRKNLKSE-PGILNPEDPGQSYTNPSNYRSQVDKIVQGLADVKNRYERISDEVRTLRELPDDYILGSDISNLFIGSTSTVQDFPLPEAPSFHGLSPREVLAIAEDFMGSMGLSNEIRHSSVNGLNDILIRLRNWISNIKEEAK--LLVAAHE---DVEVTDVSASLASFVHLLRLARFSVMPALPSIDEPQSPELIPLGTSKETTLDPSLIVNHKVLRSIISEQKCNLGKESFYPYVFVATRGVSVVRNSGLLLPLKLRAIERSYLGWIAIPFTILTKPNQVFD---W---LKSLLSKLTKSVGR-------GVKSDENESERNPDQKHSEMSASRAVRRIVPAVRLKSLTDAIGSLFFPSFTQEPCHELFVLMYREVEHDKKFLQERKRAALLKQIRESISQAIDPFAAMKAKQEQSDHNVVAGRKVEDFFHSGRNMKAVCLHLYKDVPWGLKEHYFPSIYVLPATGDLLRLDAVTLFGLISAAITYVRHSESWFSYAFLFGSLVTYVVRVASGWRRASTEYKERIARDKVANTVAQQWAVMDSLGTLAVEEAFAQLAAVFLALQQGNGKCAIDVEREMYKNVSLDAVSSNRWQQWLAD 620
            AFL CP L F  ++++   S   +  Q   +   G N      S+ P   + ++ G+S     +  S + ++ + + + ++++   SDE + L+  PD +ILGS+ SNL I S S  QD  +P AP + GL P+ V     +++   G+        +  L  IL  LR W   I ++A+  L ++ HE   DV  T  S S+ + V LL+L  F+V+P +  I +P  PE +PLG S + TLDP+L  +   +R  I     N+G  S YPY+F+ATRGV++VRNSGLL P K+RAIERSY  WI+ PF    KP    +   W   L+    +L +  GR           D      +P+    E + ++ VRR+VPA++L    +++  LF P+FTQEP HEL  LMYREV+ DK  ++   R  L +Q++ES+++ I+P    +   ++           +     GR +K V ++L++ V WG  +H+ PS +VLPAT DLLR+DA+TL GL+S   TY R++E+ F +  LFGSL TY VRV  GWR + ++YK +IA ++    ++Q+ + +DSL  +A EE    + +V+L     N K A +++ +++  V+L   +   W+ WL D
Sbjct:    7 AFLHCP-LSFHLTSRLLFSSSRKKACQTWTVKGQGTNSTPQRSSKGPQTNDDKNSGKSKVRRLHGNS-LQRLARKVGEARDKFMEASDEAKALKSSPDGFILGSEFSNLGISSMSLKQDLDVPPAPKYWGLDPQHVFEKVREYLVREGVDESDCDEYIEDLGRILSALRGWTFAISDQARPLLQLSDHEGNDDVFQTTSSDSVDALVTLLQLGGFAVLPDIIEITDPPCPEALPLGESIKDTLDPTLSQHSPAVRQHIESNGVNIGSSSHYPYLFIATRGVTLVRNSGLLFPQKIRAIERSYFSWISAPFAFFVKPILALNALGWNLALRVTQKELDRPDGREDAVRVLSAGPDVVGQSGSPNDSSLERTNTKRVRRVVPALKLDGGWNSLARLFLPTFTQEPAHELLFLMYREVDLDKDSIRREARRKLAQQVKESVAEVINPIPRKRRTVDKPKCETGEAAFYKFQKPIGR-LKPVSINLFRSVQWGTIKHFLPSTFVLPATRDLLRIDALTLLGLVSTIATYARNAETPFVFPLLFGSLATYAVRVIFGWRSSLSKYKGQIASERAKAILSQERSALDSLAVIAAEEQLPDVCSVWLCGVLKNMKEASEIQEDVFGEVTLCRETVQSWKDWLND 640          
BLAST of Gcaud9968.t1 vs. uniprot
Match: A0A7S2ZU53_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZU53_9RHOD)

HSP 1 Score: 60.8 bits (146), Expect = 1.940e-6
Identity = 34/101 (33.66%), Postives = 59/101 (58.42%), Query Frame = 0
Query:  463 LHLYKDVPWGLKEHYFPSIYVLPATGDLLRLDAVTLFGLISAAITYVRHSESWFSYAFLFGSLVTYVVRVASGWRRASTEYKERIARDKVANTVAQQWAVM 563
            + LY DV +     +FP   V+P+T D+LRLD +T+ GLI++  ++    ++ F+     G+L+ Y+VRV   +   + +YKER  R ++ +  AQ  AV+
Sbjct:   91 MKLYDDVAFAAVSAFFPGGIVIPSTFDILRLDLLTITGLIASITSFFTRIDNKFASWVAAGTLLQYLVRVFVNFINITAQYKERRGRQQLDSISAQGNAVL 191          
BLAST of Gcaud9968.t1 vs. uniprot
Match: A0A5J4YUF8_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YUF8_PORPP)

HSP 1 Score: 62.0 bits (149), Expect = 2.340e-6
Identity = 72/252 (28.57%), Postives = 110/252 (43.65%), Query Frame = 0
Query:  266 FYPYVFVATRGVSVVRNSGLLLPLKLRAIERSY-LGWIA-IPFTILTKPNQVFDWLKSLLSKLT--KSVGRGVKSDENESERNPDQKHSEMSASRAVRRIVPAVRLKSLTDAIGSLFFPSFTQEPCHELFVLMYREVEHDKKFLQERKRAALLKQIRESISQAIDPFAAMKAKQEQSDHNVVAGRKVEDFFHSGRNMKAVCLHLYKDVPWGLKEHYFPSIYVLPATGDLLRLDAVTLFGLISAAITYVRHSE 513
            F P+  +  R ++V +  G+L+  KL   E S  + W + +   IL    Q+      LLS L   +  G+G  SD  E ER     HS+      V R+ P     +    +  LFFP+F++EPC +L V          +F  E+   A  +      S+  D      AK+ ++    V  RK +      +  K   L L++ VPW   E      Y +P T DLLR+D ++L GL++A   YV  S 
Sbjct:  226 FAPHYAIWWRSLAVEKKYGMLVGQKLGIFEGSLAVRWRSQVDSLILCAIGQMTK--NRLLSPLAIKRRAGKGASSDL-ELERLSAPTHSD---DVQVARVFPNPFWDAGLKRVYRLFFPAFSREPCFQLLVTF--------RFAAEKTSWAAEETAVNWQSEGADQAGLDVAKRPRT----VEERKPK------QTRKYPDLRLFRMVPWDDVEGCLADYYAIPYTADLLRVDLLSLGGLVAAVFAYVNQSS 453          
The following BLAST results are available for this feature:
BLAST of Gcaud9968.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J585_9FLOR2.720e-22761.30Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QR24_CHOCR2.220e-11134.85Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S2ZU53_9RHOD1.940e-633.66Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A5J4YUF8_PORPP2.340e-628.57Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 77..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 334..353
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..489
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 510..514
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 535..626
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 515..534
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 490..509

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_502_length_23533_cov_4.649518contigNODE_502_length_23533_cov_4.649518:3186..5066 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9968.t1Gcaud9968.t1Gracilaria caudata M_176_S67 malemRNANODE_502_length_23533_cov_4.649518 3186..5066 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9968.t1 ID=Gcaud9968.t1|Name=Gcaud9968.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=627bp
MEAFLPCPSLPFAHSTKVHQRSQSSRRRQFVVLAKHGVNDRKNLKSEPGI
LNPEDPGQSYTNPSNYRSQVDKIVQGLADVKNRYERISDEVRTLRELPDD
YILGSDISNLFIGSTSTVQDFPLPEAPSFHGLSPREVLAIAEDFMGSMGL
SNEIRHSSVNGLNDILIRLRNWISNIKEEAKLLVAAHEDVEVTDVSASLA
SFVHLLRLARFSVMPALPSIDEPQSPELIPLGTSKETTLDPSLIVNHKVL
RSIISEQKCNLGKESFYPYVFVATRGVSVVRNSGLLLPLKLRAIERSYLG
WIAIPFTILTKPNQVFDWLKSLLSKLTKSVGRGVKSDENESERNPDQKHS
EMSASRAVRRIVPAVRLKSLTDAIGSLFFPSFTQEPCHELFVLMYREVEH
DKKFLQERKRAALLKQIRESISQAIDPFAAMKAKQEQSDHNVVAGRKVED
FFHSGRNMKAVCLHLYKDVPWGLKEHYFPSIYVLPATGDLLRLDAVTLFG
LISAAITYVRHSESWFSYAFLFGSLVTYVVRVASGWRRASTEYKERIARD
KVANTVAQQWAVMDSLGTLAVEEAFAQLAAVFLALQQGNGKCAIDVEREM
YKNVSLDAVSSNRWQQWLADQHLRKT*
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