Gcaud7678.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7678.t1
Unique NameGcaud7678.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length358
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_500_length_23599_cov_4.429981contigNODE_500_length_23599_cov_4.429981:17724..18999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMK067CT
PFAMsMIP
Max annot lvl2759|Eukaryota
KEGG koko:K09867,ko:K09868,ko:K09873,ko:K09884
KEGG TC1.A.8,1.A.8.10,1.A.8.8
KEGG Pathwayko04970,map04970
Evalue5.44e-36
EggNOG OGsCOG0580@1|root,KOG0223@2759|Eukaryota
Descriptionwater channel activity
COG categoryU
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7678Gcaud7678Gracilaria caudata M_176_S67 malegeneNODE_500_length_23599_cov_4.429981 17724..18999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7678.t1Gcaud7678.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_500_length_23599_cov_4.429981 17724..18999 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7678.t1.stop1Gcaud7678.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_500_length_23599_cov_4.429981 17724..17726 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7678.t1.CDS1Gcaud7678.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_500_length_23599_cov_4.429981 17724..17888 -
Gcaud7678.t1.CDS2Gcaud7678.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_500_length_23599_cov_4.429981 18005..18190 -
Gcaud7678.t1.CDS3Gcaud7678.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_500_length_23599_cov_4.429981 18277..18999 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7678.t1.exon1Gcaud7678.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_500_length_23599_cov_4.429981 17724..17888 -
Gcaud7678.t1.exon2Gcaud7678.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_500_length_23599_cov_4.429981 18005..18190 -
Gcaud7678.t1.exon3Gcaud7678.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_500_length_23599_cov_4.429981 18277..18999 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7678.t1.intron1Gcaud7678.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_500_length_23599_cov_4.429981 17889..18004 -
Gcaud7678.t1.intron2Gcaud7678.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_500_length_23599_cov_4.429981 18191..18276 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7678.t1.start1Gcaud7678.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_500_length_23599_cov_4.429981 18997..18999 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7678.t1 ID=Gcaud7678.t1|Name=Gcaud7678.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=358bp
MSVSKEPTEQTTLLENHPVTEVQSPPPRPDEPMPGLVSRSKPLDARVIFA
EFLCTFLFVYLSVTSTQQAPLANTLNNACIIAALAASFMPVSGAHLNPAV
TLALLATDRASLSRSIVFVFAQLSASISACLLARFLGVSIVFEGVTGGMT
ELVRAFFAEFIPMFIIVMVVFQTAVATEDEGGVGAKIAALYIGFAVLACA
GTFNGIFNPARAFGPAFLTGALNGHWVYWVGPLTGAVTAAFMSEHLFIAP
ATGRAPKGWLSYLGRKTSKAGKSLKNFGVAGLVAYGIMNTVYYGTMFSFM
LLRVGLDSGVSGFAKAWMVTWSLSQVTKPLRLLASLALAPFVERFFRWRR
STKNGEE*
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spliced messenger RNA

>Gcaud7678.t1 ID=Gcaud7678.t1|Name=Gcaud7678.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at NODE_500_length_23599_cov_4.429981:17724..18999- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGTATCAAAAGAACCAACAGAGCAAACCACACTTTTGGAAAATCA
CCCCGTCACTGAGGTACAATCACCTCCTCCCAGACCAGATGAGCCAATGC
CCGGTCTCGTCTCGCGATCAAAGCCTCTAGATGCCCGTGTAATTTTTGCA
GAGTTTCTGTGCACCTTTTTGTTTGTGTATCTCAGTGTGACATCAACACA
GCAAGCGCCGCTCGCAAACACCCTAAACAATGCTTGCATCATTGCGGCCT
TGGCCGCATCTTTCATGCCTGTCAGCGGCGCACATCTGAATCCCGCCGTC
ACACTGGCATTGCTAGCAACTGATCGTGCCTCATTATCTCGATCCATTGT
TTTTGTGTTTGCGCAGCTGTCAGCATCAATTTCAGCCTGCTTACTGGCAC
GTTTTCTAGGCGTTTCAATCGTGTTCGAAGGCGTTACGGGAGGTATGACA
GAGCTTGTGCGAGCATTTTTTGCGGAGTTTATACCGATGTTCATCATCGT
GATGGTTGTGTTCCAAACTGCAGTTGCCACGGAAGATGAAGGAGGCGTGG
GAGCAAAGATAGCGGCTCTGTATATTGGATTTGCAGTCCTTGCTTGCGCA
GGTACTTTTAATGGAATCTTTAATCCCGCAAGAGCGTTCGGACCGGCTTT
TTTGACAGGAGCGCTGAATGGGCATTGGGTGTATTGGGTAGGTCCGCTGA
CTGGAGCCGTAACGGCTGCATTCATGAGTGAACATTTGTTCATTGCACCT
GCTACAGGAAGAGCTCCAAAAGGGTGGTTGAGTTACTTGGGCCGCAAGAC
TTCGAAAGCCGGAAAGAGCTTGAAGAATTTTGGTGTTGCTGGCCTAGTGG
CTTACGGCATTATGAACACGGTGTACTACGGAACTATGTTTTCGTTCATG
TTGTTGAGGGTAGGATTGGACAGTGGAGTGAGCGGGTTTGCTAAAGCGTG
GATGGTCACTTGGTCTTTGTCACAGGTCACGAAGCCGTTGAGGCTGCTGG
CCAGTCTTGCGTTGGCGCCGTTTGTGGAACGCTTCTTCAGGTGGCGTCGA
AGTACGAAGAATGGCGAAGAATAG
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protein sequence of Gcaud7678.t1

>Gcaud7678.t1 ID=Gcaud7678.t1|Name=Gcaud7678.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=358bp
MSVSKEPTEQTTLLENHPVTEVQSPPPRPDEPMPGLVSRSKPLDARVIFA
EFLCTFLFVYLSVTSTQQAPLANTLNNACIIAALAASFMPVSGAHLNPAV
TLALLATDRASLSRSIVFVFAQLSASISACLLARFLGVSIVFEGVTGGMT
ELVRAFFAEFIPMFIIVMVVFQTAVATEDEGGVGAKIAALYIGFAVLACA
GTFNGIFNPARAFGPAFLTGALNGHWVYWVGPLTGAVTAAFMSEHLFIAP
ATGRAPKGWLSYLGRKTSKAGKSLKNFGVAGLVAYGIMNTVYYGTMFSFM
LLRVGLDSGVSGFAKAWMVTWSLSQVTKPLRLLASLALAPFVERFFRWRR
STKNGEE*
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mRNA from alignment at NODE_500_length_23599_cov_4.429981:17724..18999-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7678.t1 ID=Gcaud7678.t1|Name=Gcaud7678.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1276bp|location=Sequence derived from alignment at NODE_500_length_23599_cov_4.429981:17724..18999- (Gracilaria caudata M_176_S67 male)
ATGAGTGTATCAAAAGAACCAACAGAGCAAACCACACTTTTGGAAAATCA
CCCCGTCACTGAGGTACAATCACCTCCTCCCAGACCAGATGAGCCAATGC
CCGGTCTCGTCTCGCGATCAAAGCCTCTAGATGCCCGTGTAATTTTTGCA
GAGTTTCTGTGCACCTTTTTGTTTGTGTATCTCAGTGTGACATCAACACA
GCAAGCGCCGCTCGCAAACACCCTAAACAATGCTTGCATCATTGCGGCCT
TGGCCGCATCTTTCATGCCTGTCAGCGGCGCACATCTGAATCCCGCCGTC
ACACTGGCATTGCTAGCAACTGATCGTGCCTCATTATCTCGATCCATTGT
TTTTGTGTTTGCGCAGCTGTCAGCATCAATTTCAGCCTGCTTACTGGCAC
GTTTTCTAGGCGTTTCAATCGTGTTCGAAGGCGTTACGGGAGGTATGACA
GAGCTTGTGCGAGCATTTTTTGCGGAGTTTATACCGATGTTCATCATCGT
GATGGTTGTGTTCCAAACTGCAGTTGCCACGGAAGATGAAGGAGGCGTGG
GAGCAAAGATAGCGGCTCTGTATATTGGATTTGCAGTCCTTGCTTGCGCA
GGTACTTTTAATGGAATCTTTAATCCCGCAAGAGCGTTCGGACCGGCTTT
TTTGACAGGAGCGCTGAATGGGCATTGGGTGTATTGGGTAGGTCCGCTGA
CTGGAGCCGTAACGGCTGCATTCGTAAGTGACGGTTTTCTCTGTACCTTC
ATGCGTCAAGAAGTGGAGTTTGGGTACTAACAAAGCTTTTTTTTTATGTG
TTGTTAAAGATGAGTGAACATTTGTTCATTGCACCTGCTACAGGAAGAGC
TCCAAAAGGGTGGTTGAGTTACTTGGGCCGCAAGACTTCGAAAGCCGGAA
AGAGCTTGAAGAATTTTGGTGTTGCTGGCCTAGTGGCTTACGGCATTATG
AACACGGTGTACTACGGAACTATGTTTTCGTTCATGTTGTTGAGGGTATG
CTAAAAGCGCAAGGATTCATGTTTATCTTTTTTATCGAGTGTGAAGGAGT
TTTTTGATTGCCTAACATGAATGTACATTACATTGTATTGAATCGAATTT
TATGATCGTAGGTAGGATTGGACAGTGGAGTGAGCGGGTTTGCTAAAGCG
TGGATGGTCACTTGGTCTTTGTCACAGGTCACGAAGCCGTTGAGGCTGCT
GGCCAGTCTTGCGTTGGCGCCGTTTGTGGAACGCTTCTTCAGGTGGCGTC
GAAGTACGAAGAATGGCGAAGAATAG
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Coding sequence (CDS) from alignment at NODE_500_length_23599_cov_4.429981:17724..18999-

>Gcaud7678.t1 ID=Gcaud7678.t1|Name=Gcaud7678.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1074bp|location=Sequence derived from alignment at NODE_500_length_23599_cov_4.429981:17724..18999- (Gracilaria caudata M_176_S67 male)
ATGAGTGTATCAAAAGAACCAACAGAGCAAACCACACTTTTGGAAAATCA
CCCCGTCACTGAGGTACAATCACCTCCTCCCAGACCAGATGAGCCAATGC
CCGGTCTCGTCTCGCGATCAAAGCCTCTAGATGCCCGTGTAATTTTTGCA
GAGTTTCTGTGCACCTTTTTGTTTGTGTATCTCAGTGTGACATCAACACA
GCAAGCGCCGCTCGCAAACACCCTAAACAATGCTTGCATCATTGCGGCCT
TGGCCGCATCTTTCATGCCTGTCAGCGGCGCACATCTGAATCCCGCCGTC
ACACTGGCATTGCTAGCAACTGATCGTGCCTCATTATCTCGATCCATTGT
TTTTGTGTTTGCGCAGCTGTCAGCATCAATTTCAGCCTGCTTACTGGCAC
GTTTTCTAGGCGTTTCAATCGTGTTCGAAGGCGTTACGGGAGGTATGACA
GAGCTTGTGCGAGCATTTTTTGCGGAGTTTATACCGATGTTCATCATCGT
GATGGTTGTGTTCCAAACTGCAGTTGCCACGGAAGATGAAGGAGGCGTGG
GAGCAAAGATAGCGGCTCTGTATATTGGATTTGCAGTCCTTGCTTGCGCA
GGTACTTTTAATGGAATCTTTAATCCCGCAAGAGCGTTCGGACCGGCTTT
TTTGACAGGAGCGCTGAATGGGCATTGGGTGTATTGGGTAGGTCCGCTGA
CTGGAGCCGTAACGGCTGCATTCATGAGTGAACATTTGTTCATTGCACCT
GCTACAGGAAGAGCTCCAAAAGGGTGGTTGAGTTACTTGGGCCGCAAGAC
TTCGAAAGCCGGAAAGAGCTTGAAGAATTTTGGTGTTGCTGGCCTAGTGG
CTTACGGCATTATGAACACGGTGTACTACGGAACTATGTTTTCGTTCATG
TTGTTGAGGGTAGGATTGGACAGTGGAGTGAGCGGGTTTGCTAAAGCGTG
GATGGTCACTTGGTCTTTGTCACAGGTCACGAAGCCGTTGAGGCTGCTGG
CCAGTCTTGCGTTGGCGCCGTTTGTGGAACGCTTCTTCAGGTGGCGTCGA
AGTACGAAGAATGGCGAAGAATAG
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