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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud7560.t1.start1 | Gcaud7560.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_1140_length_13378_cov_4.309701 1704..1706 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud7560.t1.stop1 | Gcaud7560.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_1140_length_13378_cov_4.309701 5320..5322 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud7560.t1 ID=Gcaud7560.t1|Name=Gcaud7560.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=80bp
MTALLVQESIQTRFQSASDLQHCKIDPSEMCIIRGGALETYWNKSIAIGD
SSHNLSEPPQRLAKWTGRQYIDEDVDALR* back to topspliced messenger RNA >Gcaud7560.t1 ID=Gcaud7560.t1|Name=Gcaud7560.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=240bp|location=Sequence derived from alignment at NODE_1140_length_13378_cov_4.309701:1704..5322+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
atgacggcattactggtacaggagtccatccagaccaggtttcaatcagc
ttcagatcttcagcattgcaaaatcgacccctcggaaatgtgcatcattc
gaggaggtgctcttgagacctattggaacaaatctattgcgattggcgat
tcctcccataacctttccgaacccccgcaacgtctggcaaaatggactgg
acggcagtacattgatgaggatgttgatgctctccgatga back to topprotein sequence of Gcaud7560.t1 >Gcaud7560.t1 ID=Gcaud7560.t1|Name=Gcaud7560.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=80bp
MTALLVQESIQTRFQSASDLQHCKIDPSEMCIIRGGALETYWNKSIAIGD
SSHNLSEPPQRLAKWTGRQYIDEDVDALR* back to topmRNA from alignment at NODE_1140_length_13378_cov_4.309701:1704..5322+ Legend: start_codonpolypeptideCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud7560.t1 ID=Gcaud7560.t1|Name=Gcaud7560.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=3619bp|location=Sequence derived from alignment at NODE_1140_length_13378_cov_4.309701:1704..5322+ (Gracilaria caudata M_176_S67 male)
atgacgtacgtaccggtatcccataacgatttgttgttgccctgctattg
aggatcgtcacgctgctaacgttcactctcttctatggtgctcactctgt
cagggcattactggtacaggagtccatccagaccaggtttcaatcagctt
cagatcttcagcattgcaaaatcgacccctcggaaatgtgcatcattcga
ggaggtgctcttgagacctattggaacaaatctattgcgattgggtatgt
tacATTGTATTCAACACTGTAGAAAATGATTGAGATGCTCTGCAAGAAAG
CGTTTATGCATTGACACCAACTAACGGATATGTtttttctcactacagcg
attgtcatctcgagaatccaccaaattacttagattcatataactcttta
ttcgcagctgtgcagaacgggcaatgcaagtatgcaattgtcggcgagtc
tgttatcactgctgcaattcgagaaaggtactgtggggatttcgtgatcg
tgggcgaaccaatcttcaacgatggcctttccatgctccttcccattggc
agcaatctcacggagccaatgagtctggccactctggcactgcacgggaa
tcaaactgagccatccctgaaaaagtatttcaacactctgccgcagtgcg
aagcggatgtgaccagtactctgagctttggcaagcttcgttatttcttt
ttcatcttgttttccttcggaggactcatattgttggccatggttctcat
tccgcagcatgctccaagagatagcggaagtccacaaacacgtgctaccc
aagaagagcaattactagaacccaagatgatgcggtcatggaacacgcac
agcggtgaagcacgtggagtagcccttcggcacggtctcagtcacaattg
gctgatgTCAGGAGTGGAAGAAGGAAAGCATTTCTCGCGAGTTGCACCGA
GAAGATGGCGTTCGGGAAGACTGTGGGGCCCACCAAGCGGAACGAGGGTT
TTGAAATGTGCCAATTGTTGTTGGCAATGCGCAACAAATCATGTCGGTCG
GTCATGGTATGGACATGACTCGGAAATTGACTGTGGCGAGGTGTATTCGG
ACGACGAAAGTGTGTGAACACGGTAGATGACAATCAGGCGAGTCCACATG
GACGGATTGGTATGCAGGTGGTGCTTTATGTCGCGCGCAATGTGCTCATT
GTTGTGCATCTCCGTATCGCAGAAGCCCTACGCGCTACACAGTTCAAGAT
CCTCGTGGGAACTTGGGTTCGTATCTACAGAGAGAAGCAGAAGCCCTCTA
CAATTGTGAGCATCGACGATAAACAATTATATGTTCGCACCGATACCAGG
ATTCAACAATTGTCCATCAGCCAACGTATCCTCCTCAGACCTGTCCTGTT
AGAAACCCATCGTCAGCCACTGTGAGGCTCCATTCGATAGCTTCATGGCC
GACCATACCCACCACGAACACCACGCCAGTCCTTCAATCCTCATCGATGA
CATCCTAGGTGCTTAACATGCCAACTTTCAACACTCATAATTCGACGTCG
CCAGTAACAATGAGTTTGACTGTGTCCTCAAAACAGAAATGTATGACGTC
ATATCCGTCAACAATTCAAACAAATACCAACCGTACAATTGAAAGCATCA
AGAATGAAGAGACTCTACACCTACAAGGAAGGCCCAGCTTATCGGTCAAG
GTCATAACGATTCATCGCAGAAAGGGAACTCTGATTCGCATCATCAGCGT
TGCAGATGCGGGTGTAGCGTTCTACCTGCCTTACGCGCTGTGTAATGTGG
GCATGCGCACACGTGTTGCATGAATCATTGCAGATAATTTTAGTGAGAAG
TCCTAAATTAGGACAACTTGACCCCCCCTGCCAGCAAACGCAGTTGTTCA
GTGCTGTGAACTTTAACGCCCTTATGGGGACGTCAGCTGTATTGCCCTCG
TCCGCTGTGTGGAGTTGGCTGTCGAGTAGGCTCAAGATTCGACCGCAGTC
TGGTCGTCTGCACTGCAGCACTACAAGTTCAGTTGGCACAACAGCCACAT
CGTCAGAACAGGGCCTCACTACGGACCGGTGCATTTTAGGTGCCCAGGCC
AACCGAGCCAGGTTTCAGATAAAGATCAAGCCTGGCTCTTAACCCGTTAA
CCCGTTAAGAGCCAGGCTTGACTGCCAGATCTTTTTCAGATTAAGAaaca
ctcgtcggatacatggaagagttccatgtaaggtttGTAGAACATTAGCA
TTGCCTACTGCTTCAGTAACACAACGGCGACTCCAAAATCTCATGTGCCT
TTGTACGAAGTTACCATACTCAGGGGGTGCGCGATAATCCAATCACATGT
GGTATACAGTCTATACCTGCTCATACATGTATAATGTTATCTGCTAACCA
TCTTTAAGTCTGCGTACCTAATTTGGATGTATCATAGAACGTGCAGAACT
CCATATCTTCAAAAGTTGCTGTGCGTGTCGTCCAGCTTTATACAGGCGAC
AACAATTGTATTCTGAAGTGCTAAGAGGGCGAACAGTCACTAAGCAATGA
TATTCAGGCAGCAAAGCAGTCACCCCAGATTTTCGAGAGCTTCCGTGGCA
TTACTTCTACGCCATTTCAACCTTCTCTTTGCACAGGTGTTCCATCGACT
GCGTGCTTGGTTGCTTGTCGTAATCATCATCTCCTAATTCGTCCACTCCC
ACCCGctcccactcatgcgactgcgtcatcttttcgttgttctcttctac
atcatgcccggcacaggcctagcccttcgaaatgcattatcgtcgaaccc
tccgcttcgctgctgctacatggtgcagcctcccataacctttccgaacc
cccgcaacgtctggcaagtaagttgttaatcttcaGTTCGCTTCGTTGCC
CTGCGCCCCTTTAGCTTTCGCCCACCATGCTCACATCGTTGACGTCTTCA
TTCTCATTCGTGGAAaagaatggactggacggcgttctcaaggaacacct
gcttcagcaccagtcctacctcaattggacctgctcctctatgctcccct
tccatcaaacagacaccaccagtttcaatgatttcgtgttatccatgtac
gaatgtacaaacaaaacaacggggcaaatcatagattcgccaaactgcaa
gtgtgacattggcattggcggttggtttcaaaaccccgttcggtttggca
aagtgaacttcctccctccatttgggtacgatcgatatgtcgtgttcata
cacgtttctcaagccacaatttctggtcgaaatctgttcttcgttcagac
ctttgacgtcagagcttggatttgcattgcggccttgttcgtaatgttta
cgtttttgaagatgctcgaccgtagattccaaccgcctgctccttatacg
cctcttccaccctccaccaataggttccgacgttacctctaccatctcac
gaagagtcgtctactttatcgattaaggaaagccactcagagtacatgta
agTACTATATCCTCTCTCTCTTTTCTTATTCATATGCACCAAGTAGCACT
GACTTTCTATATGTACCTATGTTAATTGCGTGCGAgttcagtgatgagga
tgttgatgctctccgatga back to topCoding sequence (CDS) from alignment at NODE_1140_length_13378_cov_4.309701:1704..5322+ >Gcaud7560.t1 ID=Gcaud7560.t1|Name=Gcaud7560.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=240bp|location=Sequence derived from alignment at NODE_1140_length_13378_cov_4.309701:1704..5322+ (Gracilaria caudata M_176_S67 male)
atgacggcattactggtacaggagtccatccagaccaggtttcaatcagc
ttcagatcttcagcattgcaaaatcgacccctcggaaatgtgcatcattc
gaggaggtgctcttgagacctattggaacaaatctattgcgattggcgat
tcctcccataacctttccgaacccccgcaacgtctggcaaaatggactgg
acggcagtacattgatgaggatgttgatgctctccgatga back to top
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