Gcaud21.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud21.t1
Unique NameGcaud21.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length255
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4946_length_1872_cov_3.448624contigNODE_4946_length_1872_cov_3.448624:1108..1872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud21Gcaud21Gracilaria caudata M_176_S67 malegeneNODE_4946_length_1872_cov_3.448624 1108..1872 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud21.t1.start1Gcaud21.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_4946_length_1872_cov_3.448624 1108..1110 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud21.t1.CDS1Gcaud21.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_4946_length_1872_cov_3.448624 1108..1872 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud21.t1.exon1Gcaud21.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_4946_length_1872_cov_3.448624 1108..1872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud21.t1Gcaud21.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_4946_length_1872_cov_3.448624 1108..1872 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud21.t1 ID=Gcaud21.t1|Name=Gcaud21.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=255bp
MIADDQSVFLEMDIVSGSEVAPNVDIDIREESVFVNSLPKTVVFDDSPMF
ATTESLLTSARPLGLNDTLPVVTRPSLSAKTKLELFPGAELELDASLSAS
VKKFKVKRLFKTEVQWEQNLEAQLDAQLTVSKKFEGERSGEIFRKPIPKF
GFSGRIPFVGRIRAGAFGKVEWVAEIEVEAALRASIHASHRNKQRVTARI
IPPRFESRNLLPKNAGSSGRSSLTFENEAEADITGFVGLRPAIGVELTLG
KKGVE
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spliced messenger RNA

>Gcaud21.t1 ID=Gcaud21.t1|Name=Gcaud21.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=765bp|location=Sequence derived from alignment at NODE_4946_length_1872_cov_3.448624:1108..1872+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGCCGATGATCAGTCCGTCTTCTTGGAAATGGATATCGTATCCGG
CTCGGAAGTTGCACCAAACGTCGATATTGATATCCGCGAGGAGTCCGTGT
TCGTCAACTCACTACCCAAGACGGTGGTGTTTGATGACAGTCCCATGTTT
GCCACCACAGAGTCCCTTTTGACCTCTGCGCGACCGTTGGGGCTAAACGA
TACACTCCCTGTTGTCACACGCCCTAGCCTCTCCGCGAAGACAAAGCTGG
AATTATTTCCGGGGGCCGAACTGGAACTGGACGCGTCACTTTCTGCTAGC
GTGAAAAAGTTCAAGGTGAAACGTCTGTTCAAGACTGAGGTGCAATGGGA
GCAGAACCTGGAAGCACAGTTGGACGCTCAACTCACAGTGTCAAAGAAGT
TTGAAGGCGAGAGAAGCGGAGAGATTTTCCGCAAACCTATCCCCAAGTTC
GGCTTTTCTGGTCGAATCCCATTCGTTGGGCGCATTCGTGCTGGAGCATT
CGGAAAGGTTGAGTGGGTGGCCGAAATAGAAGTGGAAGCTGCTCTGCGAG
CGAGTATCCACGCTTCGCACCGCAACAAACAGCGCGTTACCGCAAGGATA
ATCCCGCCGCGTTTCGAATCCAGAAATCTTCTACCGAAGAATGCTGGCAG
CTCAGGAAGGTCTAGCTTGACGTTCGAGAACGAGGCCGAGGCGGACATCA
CTGGATTTGTGGGTCTACGCCCAGCAATCGGGGTGGAGCTTACACTTGGA
AAGAAAGGTGTGGAA
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protein sequence of Gcaud21.t1

>Gcaud21.t1 ID=Gcaud21.t1|Name=Gcaud21.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=255bp
MIADDQSVFLEMDIVSGSEVAPNVDIDIREESVFVNSLPKTVVFDDSPMF
ATTESLLTSARPLGLNDTLPVVTRPSLSAKTKLELFPGAELELDASLSAS
VKKFKVKRLFKTEVQWEQNLEAQLDAQLTVSKKFEGERSGEIFRKPIPKF
GFSGRIPFVGRIRAGAFGKVEWVAEIEVEAALRASIHASHRNKQRVTARI
IPPRFESRNLLPKNAGSSGRSSLTFENEAEADITGFVGLRPAIGVELTLG
KKGVE
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mRNA from alignment at NODE_4946_length_1872_cov_3.448624:1108..1872+

Legend: start_codonpolypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud21.t1 ID=Gcaud21.t1|Name=Gcaud21.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=765bp|location=Sequence derived from alignment at NODE_4946_length_1872_cov_3.448624:1108..1872+ (Gracilaria caudata M_176_S67 male)
ATGATCGCCGATGATCAGTCCGTCTTCTTGGAAATGGATATCGTATCCGG
CTCGGAAGTTGCACCAAACGTCGATATTGATATCCGCGAGGAGTCCGTGT
TCGTCAACTCACTACCCAAGACGGTGGTGTTTGATGACAGTCCCATGTTT
GCCACCACAGAGTCCCTTTTGACCTCTGCGCGACCGTTGGGGCTAAACGA
TACACTCCCTGTTGTCACACGCCCTAGCCTCTCCGCGAAGACAAAGCTGG
AATTATTTCCGGGGGCCGAACTGGAACTGGACGCGTCACTTTCTGCTAGC
GTGAAAAAGTTCAAGGTGAAACGTCTGTTCAAGACTGAGGTGCAATGGGA
GCAGAACCTGGAAGCACAGTTGGACGCTCAACTCACAGTGTCAAAGAAGT
TTGAAGGCGAGAGAAGCGGAGAGATTTTCCGCAAACCTATCCCCAAGTTC
GGCTTTTCTGGTCGAATCCCATTCGTTGGGCGCATTCGTGCTGGAGCATT
CGGAAAGGTTGAGTGGGTGGCCGAAATAGAAGTGGAAGCTGCTCTGCGAG
CGAGTATCCACGCTTCGCACCGCAACAAACAGCGCGTTACCGCAAGGATA
ATCCCGCCGCGTTTCGAATCCAGAAATCTTCTACCGAAGAATGCTGGCAG
CTCAGGAAGGTCTAGCTTGACGTTCGAGAACGAGGCCGAGGCGGACATCA
CTGGATTTGTGGGTCTACGCCCAGCAATCGGGGTGGAGCTTACACTTGGA
AAGAAAGGTGTGGAA
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Coding sequence (CDS) from alignment at NODE_4946_length_1872_cov_3.448624:1108..1872+

>Gcaud21.t1 ID=Gcaud21.t1|Name=Gcaud21.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=765bp|location=Sequence derived from alignment at NODE_4946_length_1872_cov_3.448624:1108..1872+ (Gracilaria caudata M_176_S67 male)
ATGATCGCCGATGATCAGTCCGTCTTCTTGGAAATGGATATCGTATCCGG
CTCGGAAGTTGCACCAAACGTCGATATTGATATCCGCGAGGAGTCCGTGT
TCGTCAACTCACTACCCAAGACGGTGGTGTTTGATGACAGTCCCATGTTT
GCCACCACAGAGTCCCTTTTGACCTCTGCGCGACCGTTGGGGCTAAACGA
TACACTCCCTGTTGTCACACGCCCTAGCCTCTCCGCGAAGACAAAGCTGG
AATTATTTCCGGGGGCCGAACTGGAACTGGACGCGTCACTTTCTGCTAGC
GTGAAAAAGTTCAAGGTGAAACGTCTGTTCAAGACTGAGGTGCAATGGGA
GCAGAACCTGGAAGCACAGTTGGACGCTCAACTCACAGTGTCAAAGAAGT
TTGAAGGCGAGAGAAGCGGAGAGATTTTCCGCAAACCTATCCCCAAGTTC
GGCTTTTCTGGTCGAATCCCATTCGTTGGGCGCATTCGTGCTGGAGCATT
CGGAAAGGTTGAGTGGGTGGCCGAAATAGAAGTGGAAGCTGCTCTGCGAG
CGAGTATCCACGCTTCGCACCGCAACAAACAGCGCGTTACCGCAAGGATA
ATCCCGCCGCGTTTCGAATCCAGAAATCTTCTACCGAAGAATGCTGGCAG
CTCAGGAAGGTCTAGCTTGACGTTCGAGAACGAGGCCGAGGCGGACATCA
CTGGATTTGTGGGTCTACGCCCAGCAATCGGGGTGGAGCTTACACTTGGA
AAGAAAGGTGTGGAA
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