Gcaud837.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud837.t1
Unique Name	Gcaud837.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	508

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_490_length_23884_cov_4.522254	contig	NODE_490_length_23884_cov_4.522254:11677..13200 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud837	Gcaud837	Gracilaria caudata M_176_S67 male	gene	NODE_490_length_23884_cov_4.522254 11677..13200 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud837.t1.stop1	Gcaud837.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_490_length_23884_cov_4.522254 11677..11679 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud837.t1.CDS1	Gcaud837.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_490_length_23884_cov_4.522254 11677..13200 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud837.t1.exon1	Gcaud837.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_490_length_23884_cov_4.522254 11677..13200 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud837.t1.start1	Gcaud837.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_490_length_23884_cov_4.522254 13198..13200 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud837.t1	Gcaud837.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_490_length_23884_cov_4.522254 11677..13200 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_490_length_23884_cov_4.522254:11677..13200-
coding sequence from alignment at NODE_490_length_23884_cov_4.522254:11677..13200-

mRNA sequence

>Gcaud837.t1 ID=Gcaud837.t1|Name=Gcaud837.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=508bp
MDLNVDAANHHFQPSPKKNPQPLTGRTSYRWSNFSKKPPGSNLSVTDITG
SRSTIASFRPDAPGYYSLNLAVKGHGVTYSDPIDIFVYDLDDPQQVTSAQ
SLAASAEQQYYVIGCHFAKPAVEPNDTSHLPSKGKMDIANLSSGFAIPTR
GASTQPSAAPTNPPAANNLYHPAWKRTELAPAASNSNNGHQMPASAHPRT
MALASGNPATTPADYDDNDDEDDDNAHDDDDDDDDAVIGGGGGYEDDDDE
DLEGLESGDDDDDDDEHLGDGAGDDADDGANDDGDQGADDDADGGEDGEG
ADDDANQGDEQEDEEGSDDDENQEEIEIDEEEDISSDVDIEGAEETEPVH
IPVQKEEHEEDDADEMRRDAPEQEEDDEEEEDTGMYDDVEDHQQDEDVED
DEEDDAEDDDEGGGGEDDGDDEIEVDDDQEEPKNITQEDDDDDDDDDDDD
DDDDDDEMMEEQEVPDVFPSGGIEQEQDDDNQRDDENIGDNEEYEDVEIE
NDDDGDE*

spliced messenger RNA

>Gcaud837.t1 ID=Gcaud837.t1|Name=Gcaud837.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1524bp|location=Sequence derived from alignment at NODE_490_length_23884_cov_4.522254:11677..13200- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCTCAACGTGGATGCCGCCAACCACCACTTTCAGCCATCGCCGAA
GAAGAACCCGCAGCCGCTCACGGGCCGTACCTCCTATCGCTGGTCCAACT
TCTCGAAGAAGCCGCCCGGATCAAACCTCTCCGTCACAGACATAACTGGC
AGCCGGTCTACCATAGCCTCGTTCCGTCCGGACGCCCCTGGCTACTACAG
TCTCAACTTGGCCGTCAAGGGCCACGGAGTTACCTACTCCGATCCCATCG
ACATTTTTGTGTACGACCTCGACGATCCGCAACAAGTCACATCTGCTCAA
TCTCTGGCCGCGTCCGCGGAGCAGCAGTATTACGTCATTGGTTGTCACTT
TGCAAAGCCCGCTGTAGAGCCCAATGACACATCGCACTTGCCATCGAAGG
GAAAGATGGACATTGCGAACCTATCATCAGGCTTTGCCATCCCGACACGT
GGCGCATCCACGCAACCCTCCGCCGCCCCCACTAACCCCCCCGCCGCCAA
CAATTTGTACCACCCCGCTTGGAAGCGAACTGAACTCGCTCCGGCCGCTT
CTAACTCCAACAATGGCCATCAAATGCCCGCATCAGCTCACCCGCGCACC
ATGGCGCTCGCCTCTGGCAATCCGGCCACAACACCCGCTGATTATGATGA
TAACGACGACGAAGACGACGACAACGCGCATGACGATGATGACGACGATG
ATGATGCCGTTATCGGCGGAGGCGGCGGATACGAGGACGACGATGACGAA
GATTTAGAAGGTTTGGAAAGTGGTGATGATGACGACGACGACGACGAACA
TCTCGGCGATGGAGCCGGCGATGACGCTGATGATGGCGCTAATGACGACG
GCGACCAGGGGGCAGATGACGACGCTGACGGAGGCGAGGACGGAGAGGGA
GCAGATGACGACGCCAATCAGGGAGACGAACAAGAAGACGAAGAAGGAAG
CGACGACGATGAGAACCAGGAGGAAATCGAAATTGACGAAGAGGAAGACA
TATCTTCTGACGTGGATATCGAGGGAGCTGAAGAGACGGAGCCTGTCCAT
ATACCCGTGCAAAAAGAAGAGCACGAAGAAGACGACGCCGATGAGATGAG
AAGAGATGCACCAGAGCAGGAAGAAGACGATGAGGAAGAGGAGGATACTG
GCATGTATGATGATGTTGAGGATCATCAGCAGGATGAAGACGTCGAGGAT
GATGAAGAAGATGACGCTGAGGATGACGACGAAGGCGGAGGAGGTGAGGA
CGATGGTGATGACGAAATAGAGGTCGACGATGATCAAGAGGAACCAAAGA
ATATTACGCAGGAAGACGACGACGACGATGACGACGATGACGACGATGAC
GATGACGATGACGATGACGAAATGATGGAAGAGCAAGAGGTTCCAGACGT
ATTTCCATCTGGTGGTATCGAGCAAGAGCAGGATGATGATAATCAGAGGG
ACGACGAGAACATTGGCGATAATGAAGAGTATGAGGATGTAGAGATAGAG
AACGATGACGACGGAGATGAATGA

protein sequence of Gcaud837.t1

>Gcaud837.t1 ID=Gcaud837.t1|Name=Gcaud837.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=508bp
MDLNVDAANHHFQPSPKKNPQPLTGRTSYRWSNFSKKPPGSNLSVTDITG
SRSTIASFRPDAPGYYSLNLAVKGHGVTYSDPIDIFVYDLDDPQQVTSAQ
SLAASAEQQYYVIGCHFAKPAVEPNDTSHLPSKGKMDIANLSSGFAIPTR
GASTQPSAAPTNPPAANNLYHPAWKRTELAPAASNSNNGHQMPASAHPRT
MALASGNPATTPADYDDNDDEDDDNAHDDDDDDDDAVIGGGGGYEDDDDE
DLEGLESGDDDDDDDEHLGDGAGDDADDGANDDGDQGADDDADGGEDGEG
ADDDANQGDEQEDEEGSDDDENQEEIEIDEEEDISSDVDIEGAEETEPVH
IPVQKEEHEEDDADEMRRDAPEQEEDDEEEEDTGMYDDVEDHQQDEDVED
DEEDDAEDDDEGGGGEDDGDDEIEVDDDQEEPKNITQEDDDDDDDDDDDD
DDDDDDEMMEEQEVPDVFPSGGIEQEQDDDNQRDDENIGDNEEYEDVEIE
NDDDGDE*

mRNA from alignment at NODE_490_length_23884_cov_4.522254:11677..13200-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud837.t1 ID=Gcaud837.t1|Name=Gcaud837.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1524bp|location=Sequence derived from alignment at NODE_490_length_23884_cov_4.522254:11677..13200- (Gracilaria caudata M_176_S67 male)
ATGGATCTCAACGTGGATGCCGCCAACCACCACTTTCAGCCATCGCCGAA
GAAGAACCCGCAGCCGCTCACGGGCCGTACCTCCTATCGCTGGTCCAACT
TCTCGAAGAAGCCGCCCGGATCAAACCTCTCCGTCACAGACATAACTGGC
AGCCGGTCTACCATAGCCTCGTTCCGTCCGGACGCCCCTGGCTACTACAG
TCTCAACTTGGCCGTCAAGGGCCACGGAGTTACCTACTCCGATCCCATCG
ACATTTTTGTGTACGACCTCGACGATCCGCAACAAGTCACATCTGCTCAA
TCTCTGGCCGCGTCCGCGGAGCAGCAGTATTACGTCATTGGTTGTCACTT
TGCAAAGCCCGCTGTAGAGCCCAATGACACATCGCACTTGCCATCGAAGG
GAAAGATGGACATTGCGAACCTATCATCAGGCTTTGCCATCCCGACACGT
GGCGCATCCACGCAACCCTCCGCCGCCCCCACTAACCCCCCCGCCGCCAA
CAATTTGTACCACCCCGCTTGGAAGCGAACTGAACTCGCTCCGGCCGCTT
CTAACTCCAACAATGGCCATCAAATGCCCGCATCAGCTCACCCGCGCACC
ATGGCGCTCGCCTCTGGCAATCCGGCCACAACACCCGCTGATTATGATGA
TAACGACGACGAAGACGACGACAACGCGCATGACGATGATGACGACGATG
ATGATGCCGTTATCGGCGGAGGCGGCGGATACGAGGACGACGATGACGAA
GATTTAGAAGGTTTGGAAAGTGGTGATGATGACGACGACGACGACGAACA
TCTCGGCGATGGAGCCGGCGATGACGCTGATGATGGCGCTAATGACGACG
GCGACCAGGGGGCAGATGACGACGCTGACGGAGGCGAGGACGGAGAGGGA
GCAGATGACGACGCCAATCAGGGAGACGAACAAGAAGACGAAGAAGGAAG
CGACGACGATGAGAACCAGGAGGAAATCGAAATTGACGAAGAGGAAGACA
TATCTTCTGACGTGGATATCGAGGGAGCTGAAGAGACGGAGCCTGTCCAT
ATACCCGTGCAAAAAGAAGAGCACGAAGAAGACGACGCCGATGAGATGAG
AAGAGATGCACCAGAGCAGGAAGAAGACGATGAGGAAGAGGAGGATACTG
GCATGTATGATGATGTTGAGGATCATCAGCAGGATGAAGACGTCGAGGAT
GATGAAGAAGATGACGCTGAGGATGACGACGAAGGCGGAGGAGGTGAGGA
CGATGGTGATGACGAAATAGAGGTCGACGATGATCAAGAGGAACCAAAGA
ATATTACGCAGGAAGACGACGACGACGATGACGACGATGACGACGATGAC
GATGACGATGACGATGACGAAATGATGGAAGAGCAAGAGGTTCCAGACGT
ATTTCCATCTGGTGGTATCGAGCAAGAGCAGGATGATGATAATCAGAGGG
ACGACGAGAACATTGGCGATAATGAAGAGTATGAGGATGTAGAGATAGAG
AACGATGACGACGGAGATGAATGA

Coding sequence (CDS) from alignment at NODE_490_length_23884_cov_4.522254:11677..13200-

>Gcaud837.t1 ID=Gcaud837.t1|Name=Gcaud837.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1524bp|location=Sequence derived from alignment at NODE_490_length_23884_cov_4.522254:11677..13200- (Gracilaria caudata M_176_S67 male)
ATGGATCTCAACGTGGATGCCGCCAACCACCACTTTCAGCCATCGCCGAA
GAAGAACCCGCAGCCGCTCACGGGCCGTACCTCCTATCGCTGGTCCAACT
TCTCGAAGAAGCCGCCCGGATCAAACCTCTCCGTCACAGACATAACTGGC
AGCCGGTCTACCATAGCCTCGTTCCGTCCGGACGCCCCTGGCTACTACAG
TCTCAACTTGGCCGTCAAGGGCCACGGAGTTACCTACTCCGATCCCATCG
ACATTTTTGTGTACGACCTCGACGATCCGCAACAAGTCACATCTGCTCAA
TCTCTGGCCGCGTCCGCGGAGCAGCAGTATTACGTCATTGGTTGTCACTT
TGCAAAGCCCGCTGTAGAGCCCAATGACACATCGCACTTGCCATCGAAGG
GAAAGATGGACATTGCGAACCTATCATCAGGCTTTGCCATCCCGACACGT
GGCGCATCCACGCAACCCTCCGCCGCCCCCACTAACCCCCCCGCCGCCAA
CAATTTGTACCACCCCGCTTGGAAGCGAACTGAACTCGCTCCGGCCGCTT
CTAACTCCAACAATGGCCATCAAATGCCCGCATCAGCTCACCCGCGCACC
ATGGCGCTCGCCTCTGGCAATCCGGCCACAACACCCGCTGATTATGATGA
TAACGACGACGAAGACGACGACAACGCGCATGACGATGATGACGACGATG
ATGATGCCGTTATCGGCGGAGGCGGCGGATACGAGGACGACGATGACGAA
GATTTAGAAGGTTTGGAAAGTGGTGATGATGACGACGACGACGACGAACA
TCTCGGCGATGGAGCCGGCGATGACGCTGATGATGGCGCTAATGACGACG
GCGACCAGGGGGCAGATGACGACGCTGACGGAGGCGAGGACGGAGAGGGA
GCAGATGACGACGCCAATCAGGGAGACGAACAAGAAGACGAAGAAGGAAG
CGACGACGATGAGAACCAGGAGGAAATCGAAATTGACGAAGAGGAAGACA
TATCTTCTGACGTGGATATCGAGGGAGCTGAAGAGACGGAGCCTGTCCAT
ATACCCGTGCAAAAAGAAGAGCACGAAGAAGACGACGCCGATGAGATGAG
AAGAGATGCACCAGAGCAGGAAGAAGACGATGAGGAAGAGGAGGATACTG
GCATGTATGATGATGTTGAGGATCATCAGCAGGATGAAGACGTCGAGGAT
GATGAAGAAGATGACGCTGAGGATGACGACGAAGGCGGAGGAGGTGAGGA
CGATGGTGATGACGAAATAGAGGTCGACGATGATCAAGAGGAACCAAAGA
ATATTACGCAGGAAGACGACGACGACGATGACGACGATGACGACGATGAC
GATGACGATGACGATGACGAAATGATGGAAGAGCAAGAGGTTCCAGACGT
ATTTCCATCTGGTGGTATCGAGCAAGAGCAGGATGATGATAATCAGAGGG
ACGACGAGAACATTGGCGATAATGAAGAGTATGAGGATGTAGAGATAGAG
AACGATGACGACGGAGATGAATGA