Gcaud836.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud836.t1
Unique Name	Gcaud836.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	516

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_490_length_23884_cov_4.522254	contig	NODE_490_length_23884_cov_4.522254:9049..10855 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S123_155V6.1
PFAMs	WD40
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K22382
GOs	GO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006970,GO:0008150,GO:0009314,GO:0009416,GO:0009628,GO:0009719,GO:0009723,GO:0009725,GO:0009733,GO:0009737,GO:0010033,GO:0033993,GO:0042221,GO:0044424,GO:0044464,GO:0050896,GO:0097305,GO:1901700
Evalue	2.54e-78
EggNOG OGs	KOG0293@1\|root,KOG0293@2759\|Eukaryota,37KWQ@33090\|Viridiplantae,3GADX@35493\|Streptophyta
Description	WD repeat-containing protein
COG category	CE
BRITE	ko00000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud836	Gcaud836	Gracilaria caudata M_176_S67 male	gene	NODE_490_length_23884_cov_4.522254 9049..10855 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud836.t1	Gcaud836.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_490_length_23884_cov_4.522254 9049..10855 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud836.t1.stop1	Gcaud836.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_490_length_23884_cov_4.522254 9049..9051 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud836.t1.CDS1	Gcaud836.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_490_length_23884_cov_4.522254 9049..9078 -
Gcaud836.t1.CDS2	Gcaud836.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_490_length_23884_cov_4.522254 9221..9308 -
Gcaud836.t1.CDS3	Gcaud836.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_490_length_23884_cov_4.522254 9426..10855 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud836.t1.exon1	Gcaud836.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_490_length_23884_cov_4.522254 9049..9078 -
Gcaud836.t1.exon2	Gcaud836.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_490_length_23884_cov_4.522254 9221..9308 -
Gcaud836.t1.exon3	Gcaud836.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_490_length_23884_cov_4.522254 9426..10855 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud836.t1.intron1	Gcaud836.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_490_length_23884_cov_4.522254 9079..9220 -
Gcaud836.t1.intron2	Gcaud836.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_490_length_23884_cov_4.522254 9309..9425 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud836.t1.start1	Gcaud836.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_490_length_23884_cov_4.522254 10853..10855 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_490_length_23884_cov_4.522254:9049..10855-
coding sequence from alignment at NODE_490_length_23884_cov_4.522254:9049..10855-

mRNA sequence

>Gcaud836.t1 ID=Gcaud836.t1|Name=Gcaud836.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=516bp
MNGFNISGNGVHPDVDLLADAISSDAPMEPNLTERGLDRHELVRIIVQAI
DALGYSSSARVLEKEAGVEAMTQQMRTLRGCVLEGKWDQLEEVLAQVTVF
KSDDDARAARFVLYEQKFLELLEAGHTADALECLRNDLTRVSPDPKLLHK
LPLLCMCTTADEVRDRAEWPGAGPESRTAVLDKLQRYIPASELLQENRLE
NLLWQAIEQQKRDTMFPYTRQSRVSLLEDMVHCEERVPRKILHRLEGHTD
EVWFVQFSHRGEYLASSSKDAEVIVWRVGALLEGKCNKSNSILHKLRGHS
QMVCFLSWSPDDQFLLSTGDDQTIRLWNIKSGECCRVFEKHTGAITSCAW
MPNGKAFVSGAHDQKLLEWDVDSGEVIASYNVPNRVNDLTISSNGKLLVA
TCSDNTIIIFDTGKKQQLSMMNEDYSITSLFLSADSQSLLVSINSHEDPE
AIDPEIHVWNIPKQRVVQKLTGFKQTRGHEGTVNTIACNESNQNLFASGS
DDKTVIIWGPANGSK*

spliced messenger RNA

>Gcaud836.t1 ID=Gcaud836.t1|Name=Gcaud836.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1548bp|location=Sequence derived from alignment at NODE_490_length_23884_cov_4.522254:9049..10855- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGGGTTTAATATATCTGGAAATGGCGTCCATCCGGATGTCGACCT
TTTGGCAGATGCAATCTCTTCCGATGCACCTATGGAGCCCAATCTTACTG
AGCGAGGGCTGGACCGTCATGAACTTGTTCGAATAATTGTTCAAGCGATC
GATGCTTTGGGATACAGTTCTTCGGCTCGTGTGCTGGAGAAAGAAGCCGG
AGTAGAGGCCATGACACAACAGATGCGAACGTTACGCGGTTGTGTCCTCG
AGGGGAAGTGGGACCAACTGGAGGAAGTTCTTGCGCAAGTAACAGTGTTC
AAATCAGACGATGACGCCCGTGCAGCGCGTTTTGTTCTCTACGAACAAAA
GTTCCTCGAATTGCTTGAAGCTGGCCATACAGCAGATGCCTTAGAGTGTT
TGAGAAACGATCTGACGCGCGTAAGCCCTGACCCCAAGCTACTTCACAAG
CTTCCTTTACTCTGTATGTGCACAACAGCAGACGAAGTACGTGATCGTGC
GGAGTGGCCTGGAGCTGGTCCGGAGTCACGAACAGCCGTTCTAGATAAGC
TGCAGCGGTACATTCCTGCGAGCGAGCTACTGCAAGAGAACCGACTCGAA
AACTTGCTATGGCAAGCGATTGAGCAGCAAAAGCGCGACACAATGTTCCC
ATACACACGACAGAGTCGCGTTAGTTTGTTGGAGGATATGGTGCACTGTG
AGGAACGTGTCCCAAGAAAGATACTGCACCGTCTAGAGGGACATACCGAT
GAGGTATGGTTCGTGCAGTTTTCTCACAGGGGTGAGTATCTTGCGTCCTC
GTCAAAAGATGCCGAAGTTATTGTATGGAGAGTCGGAGCACTTTTAGAGG
GCAAGTGTAACAAGAGTAATTCAATACTTCACAAGTTGAGGGGCCATTCA
CAGATGGTTTGCTTCTTGAGTTGGTCCCCAGATGATCAATTCCTACTCAG
CACTGGCGACGACCAAACTATTCGTCTATGGAACATAAAGTCAGGTGAAT
GTTGTCGCGTTTTTGAGAAGCATACTGGCGCAATCACTTCCTGTGCGTGG
ATGCCAAATGGAAAAGCTTTTGTTTCTGGCGCACATGACCAAAAACTGCT
GGAGTGGGACGTTGACAGCGGTGAAGTAATCGCATCGTACAATGTACCGA
ACCGCGTGAATGATCTTACGATATCAAGTAATGGCAAGTTGCTTGTCGCT
ACTTGCTCGGACAACACAATCATTATTTTTGATACAGGAAAGAAACAGCA
GTTGTCTATGATGAACGAGGACTATAGCATCACGTCTCTTTTCTTATCTG
CGGACAGCCAGTCCCTTCTCGTCAGTATAAATTCTCATGAAGATCCAGAG
GCAATAGACCCAGAAATTCATGTCTGGAACATTCCAAAGCAACGAGTTGT
ACAGAAGCTGACTGGATTTAAACAAACAAGAGGTCATGAAGGAACTGTGA
ATACGATTGCATGCAACGAAAGCAATCAAAACTTGTTCGCCTCAGGCTCC
GATGACAAGACGGTCATAATATGGGGGCCTGCTAACGGATCGAAATAA

protein sequence of Gcaud836.t1

>Gcaud836.t1 ID=Gcaud836.t1|Name=Gcaud836.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=516bp
MNGFNISGNGVHPDVDLLADAISSDAPMEPNLTERGLDRHELVRIIVQAI
DALGYSSSARVLEKEAGVEAMTQQMRTLRGCVLEGKWDQLEEVLAQVTVF
KSDDDARAARFVLYEQKFLELLEAGHTADALECLRNDLTRVSPDPKLLHK
LPLLCMCTTADEVRDRAEWPGAGPESRTAVLDKLQRYIPASELLQENRLE
NLLWQAIEQQKRDTMFPYTRQSRVSLLEDMVHCEERVPRKILHRLEGHTD
EVWFVQFSHRGEYLASSSKDAEVIVWRVGALLEGKCNKSNSILHKLRGHS
QMVCFLSWSPDDQFLLSTGDDQTIRLWNIKSGECCRVFEKHTGAITSCAW
MPNGKAFVSGAHDQKLLEWDVDSGEVIASYNVPNRVNDLTISSNGKLLVA
TCSDNTIIIFDTGKKQQLSMMNEDYSITSLFLSADSQSLLVSINSHEDPE
AIDPEIHVWNIPKQRVVQKLTGFKQTRGHEGTVNTIACNESNQNLFASGS
DDKTVIIWGPANGSK*

mRNA from alignment at NODE_490_length_23884_cov_4.522254:9049..10855-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud836.t1 ID=Gcaud836.t1|Name=Gcaud836.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1807bp|location=Sequence derived from alignment at NODE_490_length_23884_cov_4.522254:9049..10855- (Gracilaria caudata M_176_S67 male)
ATGAACGGGTTTAATATATCTGGAAATGGCGTCCATCCGGATGTCGACCT
TTTGGCAGATGCAATCTCTTCCGATGCACCTATGGAGCCCAATCTTACTG
AGCGAGGGCTGGACCGTCATGAACTTGTTCGAATAATTGTTCAAGCGATC
GATGCTTTGGGATACAGTTCTTCGGCTCGTGTGCTGGAGAAAGAAGCCGG
AGTAGAGGCCATGACACAACAGATGCGAACGTTACGCGGTTGTGTCCTCG
AGGGGAAGTGGGACCAACTGGAGGAAGTTCTTGCGCAAGTAACAGTGTTC
AAATCAGACGATGACGCCCGTGCAGCGCGTTTTGTTCTCTACGAACAAAA
GTTCCTCGAATTGCTTGAAGCTGGCCATACAGCAGATGCCTTAGAGTGTT
TGAGAAACGATCTGACGCGCGTAAGCCCTGACCCCAAGCTACTTCACAAG
CTTCCTTTACTCTGTATGTGCACAACAGCAGACGAAGTACGTGATCGTGC
GGAGTGGCCTGGAGCTGGTCCGGAGTCACGAACAGCCGTTCTAGATAAGC
TGCAGCGGTACATTCCTGCGAGCGAGCTACTGCAAGAGAACCGACTCGAA
AACTTGCTATGGCAAGCGATTGAGCAGCAAAAGCGCGACACAATGTTCCC
ATACACACGACAGAGTCGCGTTAGTTTGTTGGAGGATATGGTGCACTGTG
AGGAACGTGTCCCAAGAAAGATACTGCACCGTCTAGAGGGACATACCGAT
GAGGTATGGTTCGTGCAGTTTTCTCACAGGGGTGAGTATCTTGCGTCCTC
GTCAAAAGATGCCGAAGTTATTGTATGGAGAGTCGGAGCACTTTTAGAGG
GCAAGTGTAACAAGAGTAATTCAATACTTCACAAGTTGAGGGGCCATTCA
CAGATGGTTTGCTTCTTGAGTTGGTCCCCAGATGATCAATTCCTACTCAG
CACTGGCGACGACCAAACTATTCGTCTATGGAACATAAAGTCAGGTGAAT
GTTGTCGCGTTTTTGAGAAGCATACTGGCGCAATCACTTCCTGTGCGTGG
ATGCCAAATGGAAAAGCTTTTGTTTCTGGCGCACATGACCAAAAACTGCT
GGAGTGGGACGTTGACAGCGGTGAAGTAATCGCATCGTACAATGTACCGA
ACCGCGTGAATGATCTTACGATATCAAGTAATGGCAAGTTGCTTGTCGCT
ACTTGCTCGGACAACACAATCATTATTTTTGATACAGGAAAGAAACAGCA
GTTGTCTATGATGAACGAGGACTATAGCATCACGTCTCTTTTCTTATCTG
CGGACAGCCAGTCCCTTCTCGTCAGTATAAATTCTCATGAAGATCCAGAG
GCAATAGACCCAGAAATTCATGTCTGGAACATTCCAAAGCAACGAGTTGT
ACAGAAGCTGACTGGATTTAAACAAACAAGGTATGTGATACGCGCTTGTT
TCGGAGGACATAATCAGATGCTTGTACTCTGCGGGTCAGAAGATGAACTC
GTCTACATATGGGAGCGACGAAGCGGGAACCTTATTGCAAAACTCAGAGG
TCATGAAGGAACTGTGAATACGATTGCATGCAACGAAAGCAATCAAAACT
TGTTCGCCTCAGGCTCCGATGACAAGACGGTCATAGTAAGTTGCTGGCAA
GATTTCCCATTCTCGCTGTTTTGATCTAACCAAAACGTCAACTCACCGCG
TGCTTCCATGTGTTTGCTTGGTCCATGATTGAATTGTTCTTTATGACGCC
ATTTGCTTCAATAATGGTCGTGTCCAGATATGGGGGCCTGCTAACGGATC
GAAATAA

Coding sequence (CDS) from alignment at NODE_490_length_23884_cov_4.522254:9049..10855-

>Gcaud836.t1 ID=Gcaud836.t1|Name=Gcaud836.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1548bp|location=Sequence derived from alignment at NODE_490_length_23884_cov_4.522254:9049..10855- (Gracilaria caudata M_176_S67 male)
ATGAACGGGTTTAATATATCTGGAAATGGCGTCCATCCGGATGTCGACCT
TTTGGCAGATGCAATCTCTTCCGATGCACCTATGGAGCCCAATCTTACTG
AGCGAGGGCTGGACCGTCATGAACTTGTTCGAATAATTGTTCAAGCGATC
GATGCTTTGGGATACAGTTCTTCGGCTCGTGTGCTGGAGAAAGAAGCCGG
AGTAGAGGCCATGACACAACAGATGCGAACGTTACGCGGTTGTGTCCTCG
AGGGGAAGTGGGACCAACTGGAGGAAGTTCTTGCGCAAGTAACAGTGTTC
AAATCAGACGATGACGCCCGTGCAGCGCGTTTTGTTCTCTACGAACAAAA
GTTCCTCGAATTGCTTGAAGCTGGCCATACAGCAGATGCCTTAGAGTGTT
TGAGAAACGATCTGACGCGCGTAAGCCCTGACCCCAAGCTACTTCACAAG
CTTCCTTTACTCTGTATGTGCACAACAGCAGACGAAGTACGTGATCGTGC
GGAGTGGCCTGGAGCTGGTCCGGAGTCACGAACAGCCGTTCTAGATAAGC
TGCAGCGGTACATTCCTGCGAGCGAGCTACTGCAAGAGAACCGACTCGAA
AACTTGCTATGGCAAGCGATTGAGCAGCAAAAGCGCGACACAATGTTCCC
ATACACACGACAGAGTCGCGTTAGTTTGTTGGAGGATATGGTGCACTGTG
AGGAACGTGTCCCAAGAAAGATACTGCACCGTCTAGAGGGACATACCGAT
GAGGTATGGTTCGTGCAGTTTTCTCACAGGGGTGAGTATCTTGCGTCCTC
GTCAAAAGATGCCGAAGTTATTGTATGGAGAGTCGGAGCACTTTTAGAGG
GCAAGTGTAACAAGAGTAATTCAATACTTCACAAGTTGAGGGGCCATTCA
CAGATGGTTTGCTTCTTGAGTTGGTCCCCAGATGATCAATTCCTACTCAG
CACTGGCGACGACCAAACTATTCGTCTATGGAACATAAAGTCAGGTGAAT
GTTGTCGCGTTTTTGAGAAGCATACTGGCGCAATCACTTCCTGTGCGTGG
ATGCCAAATGGAAAAGCTTTTGTTTCTGGCGCACATGACCAAAAACTGCT
GGAGTGGGACGTTGACAGCGGTGAAGTAATCGCATCGTACAATGTACCGA
ACCGCGTGAATGATCTTACGATATCAAGTAATGGCAAGTTGCTTGTCGCT
ACTTGCTCGGACAACACAATCATTATTTTTGATACAGGAAAGAAACAGCA
GTTGTCTATGATGAACGAGGACTATAGCATCACGTCTCTTTTCTTATCTG
CGGACAGCCAGTCCCTTCTCGTCAGTATAAATTCTCATGAAGATCCAGAG
GCAATAGACCCAGAAATTCATGTCTGGAACATTCCAAAGCAACGAGTTGT
ACAGAAGCTGACTGGATTTAAACAAACAAGAGGTCATGAAGGAACTGTGA
ATACGATTGCATGCAACGAAAGCAATCAAAACTTGTTCGCCTCAGGCTCC
GATGACAAGACGGTCATAATATGGGGGCCTGCTAACGGATCGAAATAA