Gcaud2345.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2345.t1
Unique Name	Gcaud2345.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	342

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_48_length_65905_cov_4.503282	contig	NODE_48_length_65905_cov_4.503282:29967..30992 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707885.1
Preferred name	TAD3
PFAMs	SET,dCMP_cyt_deam_1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K07117,ko:K15442
GOs	GO:0002097,GO:0002100,GO:0003674,GO:0003824,GO:0004000,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006382,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008251,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016553,GO:0016787,GO:0016810,GO:0016814,GO:0019239,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0052717,GO:0052718,GO:0071704,GO:0090304,GO:1901360,GO:1902494
Evalue	2.37e-29
EggNOG OGs	COG0590@1\|root,KOG2771@2759\|Eukaryota
Description	RNA modification
COG category	FJ
BRITE	ko00000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2345	Gcaud2345	Gracilaria caudata M_176_S67 male	gene	NODE_48_length_65905_cov_4.503282 29967..30992 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2345.t1.start1	Gcaud2345.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_48_length_65905_cov_4.503282 29967..29969 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2345.t1.CDS1	Gcaud2345.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_48_length_65905_cov_4.503282 29967..30992 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2345.t1.exon1	Gcaud2345.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_48_length_65905_cov_4.503282 29967..30992 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2345.t1.stop1	Gcaud2345.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_48_length_65905_cov_4.503282 30990..30992 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2345.t1	Gcaud2345.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_48_length_65905_cov_4.503282 29967..30992 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_48_length_65905_cov_4.503282:29967..30992+
coding sequence from alignment at NODE_48_length_65905_cov_4.503282:29967..30992+

mRNA sequence

>Gcaud2345.t1 ID=Gcaud2345.t1|Name=Gcaud2345.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=342bp
MVRFRSEKNTSVDHEDEFSKILRQHVKQVGTSGAENGPRQSQTCAVLVSS
IEPQQTSKVMPILSEHFPLNDGLSHLKRVRRIHSQNLPSGFRLELVLSRE
EAWKHQTEEARKALEPFNLTPRKCMVPAAAPLSREELLQWGDLWPLVFKP
GRHTFKPPAPDELKEMYSHICNTVELGEEIQEPNCAVAATLVHPATGKVV
AFAQDQSCRKAGSDCSFTSNRRLAHAVMNCLALFASPHTPVTRGQGKDDD
VQKTVRVSTRASCLPLDQYLCTGLDCYVTREPCVMCAMALLHSRIRRVVF
ATLNDENVGGFSQARIHNDPALNHRFEAFIVPLEQIKSCLK*

spliced messenger RNA

>Gcaud2345.t1 ID=Gcaud2345.t1|Name=Gcaud2345.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:29967..30992+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCAGGTTCAGGTCAGAGAAGAACACCTCTGTAGATCACGAAGATGA
ATTCTCGAAGATTCTCCGACAGCATGTAAAACAAGTCGGCACAAGTGGTG
CCGAAAATGGTCCTAGACAATCACAGACGTGTGCGGTGCTTGTTTCTTCG
ATTGAACCGCAGCAAACAAGCAAGGTCATGCCGATATTGTCGGAGCATTT
TCCTCTCAATGACGGACTTTCTCATTTGAAACGAGTGAGACGAATACATT
CTCAGAACCTGCCAAGTGGGTTCCGGCTGGAATTGGTGCTTTCTCGAGAA
GAAGCATGGAAGCATCAAACAGAGGAAGCAAGAAAAGCGCTGGAGCCCTT
TAATTTGACACCACGGAAGTGCATGGTTCCTGCCGCGGCTCCTCTCTCAC
GTGAAGAACTACTTCAATGGGGCGATCTCTGGCCATTAGTTTTTAAACCT
GGAAGACACACTTTCAAACCACCAGCACCAGATGAACTAAAAGAAATGTA
TAGTCATATTTGTAACACTGTCGAACTGGGCGAAGAAATTCAGGAACCCA
ACTGCGCAGTGGCCGCTACGTTGGTTCACCCAGCAACGGGAAAAGTTGTG
GCTTTCGCCCAAGATCAGTCTTGTCGGAAAGCCGGATCAGATTGTTCGTT
CACATCGAATAGACGTTTAGCACATGCTGTTATGAACTGCCTTGCGCTCT
TTGCATCTCCTCATACTCCCGTCACAAGGGGACAGGGTAAAGATGACGAC
GTCCAGAAAACGGTGAGGGTGTCGACGAGGGCTAGCTGCCTCCCACTAGA
CCAATATCTGTGTACTGGGTTGGACTGCTACGTGACCAGGGAACCTTGTG
TTATGTGTGCAATGGCATTACTTCATTCCAGAATTCGACGGGTGGTTTTC
GCAACCTTGAACGACGAAAATGTCGGTGGATTCTCCCAGGCAAGGATTCA
TAACGATCCTGCTCTGAATCATCGCTTCGAAGCATTCATTGTCCCACTCG
AGCAAATAAAGTCTTGCTTGAAATGA

protein sequence of Gcaud2345.t1

>Gcaud2345.t1 ID=Gcaud2345.t1|Name=Gcaud2345.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=342bp
MVRFRSEKNTSVDHEDEFSKILRQHVKQVGTSGAENGPRQSQTCAVLVSS
IEPQQTSKVMPILSEHFPLNDGLSHLKRVRRIHSQNLPSGFRLELVLSRE
EAWKHQTEEARKALEPFNLTPRKCMVPAAAPLSREELLQWGDLWPLVFKP
GRHTFKPPAPDELKEMYSHICNTVELGEEIQEPNCAVAATLVHPATGKVV
AFAQDQSCRKAGSDCSFTSNRRLAHAVMNCLALFASPHTPVTRGQGKDDD
VQKTVRVSTRASCLPLDQYLCTGLDCYVTREPCVMCAMALLHSRIRRVVF
ATLNDENVGGFSQARIHNDPALNHRFEAFIVPLEQIKSCLK*

mRNA from alignment at NODE_48_length_65905_cov_4.503282:29967..30992+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2345.t1 ID=Gcaud2345.t1|Name=Gcaud2345.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1026bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:29967..30992+ (Gracilaria caudata M_176_S67 male)
ATGGTCAGGTTCAGGTCAGAGAAGAACACCTCTGTAGATCACGAAGATGA
ATTCTCGAAGATTCTCCGACAGCATGTAAAACAAGTCGGCACAAGTGGTG
CCGAAAATGGTCCTAGACAATCACAGACGTGTGCGGTGCTTGTTTCTTCG
ATTGAACCGCAGCAAACAAGCAAGGTCATGCCGATATTGTCGGAGCATTT
TCCTCTCAATGACGGACTTTCTCATTTGAAACGAGTGAGACGAATACATT
CTCAGAACCTGCCAAGTGGGTTCCGGCTGGAATTGGTGCTTTCTCGAGAA
GAAGCATGGAAGCATCAAACAGAGGAAGCAAGAAAAGCGCTGGAGCCCTT
TAATTTGACACCACGGAAGTGCATGGTTCCTGCCGCGGCTCCTCTCTCAC
GTGAAGAACTACTTCAATGGGGCGATCTCTGGCCATTAGTTTTTAAACCT
GGAAGACACACTTTCAAACCACCAGCACCAGATGAACTAAAAGAAATGTA
TAGTCATATTTGTAACACTGTCGAACTGGGCGAAGAAATTCAGGAACCCA
ACTGCGCAGTGGCCGCTACGTTGGTTCACCCAGCAACGGGAAAAGTTGTG
GCTTTCGCCCAAGATCAGTCTTGTCGGAAAGCCGGATCAGATTGTTCGTT
CACATCGAATAGACGTTTAGCACATGCTGTTATGAACTGCCTTGCGCTCT
TTGCATCTCCTCATACTCCCGTCACAAGGGGACAGGGTAAAGATGACGAC
GTCCAGAAAACGGTGAGGGTGTCGACGAGGGCTAGCTGCCTCCCACTAGA
CCAATATCTGTGTACTGGGTTGGACTGCTACGTGACCAGGGAACCTTGTG
TTATGTGTGCAATGGCATTACTTCATTCCAGAATTCGACGGGTGGTTTTC
GCAACCTTGAACGACGAAAATGTCGGTGGATTCTCCCAGGCAAGGATTCA
TAACGATCCTGCTCTGAATCATCGCTTCGAAGCATTCATTGTCCCACTCG
AGCAAATAAAGTCTTGCTTGAAATGA

Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:29967..30992+

>Gcaud2345.t1 ID=Gcaud2345.t1|Name=Gcaud2345.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1026bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:29967..30992+ (Gracilaria caudata M_176_S67 male)
ATGGTCAGGTTCAGGTCAGAGAAGAACACCTCTGTAGATCACGAAGATGA
ATTCTCGAAGATTCTCCGACAGCATGTAAAACAAGTCGGCACAAGTGGTG
CCGAAAATGGTCCTAGACAATCACAGACGTGTGCGGTGCTTGTTTCTTCG
ATTGAACCGCAGCAAACAAGCAAGGTCATGCCGATATTGTCGGAGCATTT
TCCTCTCAATGACGGACTTTCTCATTTGAAACGAGTGAGACGAATACATT
CTCAGAACCTGCCAAGTGGGTTCCGGCTGGAATTGGTGCTTTCTCGAGAA
GAAGCATGGAAGCATCAAACAGAGGAAGCAAGAAAAGCGCTGGAGCCCTT
TAATTTGACACCACGGAAGTGCATGGTTCCTGCCGCGGCTCCTCTCTCAC
GTGAAGAACTACTTCAATGGGGCGATCTCTGGCCATTAGTTTTTAAACCT
GGAAGACACACTTTCAAACCACCAGCACCAGATGAACTAAAAGAAATGTA
TAGTCATATTTGTAACACTGTCGAACTGGGCGAAGAAATTCAGGAACCCA
ACTGCGCAGTGGCCGCTACGTTGGTTCACCCAGCAACGGGAAAAGTTGTG
GCTTTCGCCCAAGATCAGTCTTGTCGGAAAGCCGGATCAGATTGTTCGTT
CACATCGAATAGACGTTTAGCACATGCTGTTATGAACTGCCTTGCGCTCT
TTGCATCTCCTCATACTCCCGTCACAAGGGGACAGGGTAAAGATGACGAC
GTCCAGAAAACGGTGAGGGTGTCGACGAGGGCTAGCTGCCTCCCACTAGA
CCAATATCTGTGTACTGGGTTGGACTGCTACGTGACCAGGGAACCTTGTG
TTATGTGTGCAATGGCATTACTTCATTCCAGAATTCGACGGGTGGTTTTC
GCAACCTTGAACGACGAAAATGTCGGTGGATTCTCCCAGGCAAGGATTCA
TAACGATCCTGCTCTGAATCATCGCTTCGAAGCATTCATTGTCCCACTCG
AGCAAATAAAGTCTTGCTTGAAATGA