Gcaud2341.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2341.t1
Unique NameGcaud2341.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length725
Homology
BLAST of Gcaud2341.t1 vs. uniprot
Match: A0A2V3J039_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J039_9FLOR)

HSP 1 Score: 261 bits (666), Expect = 2.510e-77
Identity = 139/286 (48.60%), Postives = 192/286 (67.13%), Query Frame = 0
Query:  440 DTAAQIPRETRDL-APDIRFPSCPTYKPHTLSEAGGSVWVSSRVILLWRLTCTWLFVFTLGVFAPSGQFNYEWLSTWVYIGQSSSI-----------------KPGQ-RVFRLLASSTVCMYQIFFSLSAGVDVIYWLVLKEKEGLKISRILLHAINFVLLFVDSFLSLRMAFHLTYVFVTIAIVATWLIFAWIRYAVTKQWVHQVLDFRVVGSARAATVHIIIFLTFFAVASLLLLVNRLNRLNFISRRIQSIIADELQVSFTSTTIDEENQGNDDLDYILFETQ 706
            D++ ++    RD  AP +   +  +Y   TLS+ GGSVW+SSRV L+WRL C W+F FTLG+F PSGQF +EWLSTW+Y+  S ++                 + G+   F LL S+TV +YQI  SL+ G+DV+YW++LK++    ISR LLH INFVLLF+DSFLSL++ FHL YVF+  AIV  WL+  W+RYA T+QW +QVL+F+ VG++RA  VH  + LTF A A+++L +NR+NR+ FI RRI SI ADE ++   S  ID EN  +D+L+ +  ETQ
Sbjct:   45 DSSDKLRPPARDFSAPGLSSLAYRSYTTPTLSDVGGSVWLSSRVFLVWRLFCAWIFAFTLGLFVPSGQFRFEWLSTWIYLSASCTMLLVTFSSLLYHLYPERSRSGRFGSFSLLVSTTVGLYQISLSLALGIDVLYWVLLKDEHDEPISRALLHIINFVLLFIDSFLSLKLVFHLMYVFLGAAIVVAWLVSTWVRYAFTRQWSYQVLNFQAVGASRAIAVHFAMVLTFLATATIILFINRINRVEFIRRRIDSIAADEFEMCVRSINIDPENPPDDELERVFVETQ 330          
BLAST of Gcaud2341.t1 vs. uniprot
Match: R7QCT6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCT6_CHOCR)

HSP 1 Score: 103 bits (257), Expect = 9.790e-20
Identity = 110/392 (28.06%), Postives = 177/392 (45.15%), Query Frame = 0
Query:   58 LVGHLVFFSLHADFNFTEYLTWNYVATTLALLLALTCSLLDLIHDHPDQQDNETSPFSNSTEQNVLDDVERQSQILAPSTEPKLLLFFTRITVPVYQLALSATLFGTVVFWAAVYTNATIPITYALLAQAVASPAIALADFLLSFRMNFRLIYLAPYILYNAAYLVVAYTL--TERAYLFVFLRRDISRSAFVAKAAGLAAACIFTAVLLYFITALRSLRSTRSLPDAISARSKSHMNEDRAESASGSAVSSHHSDL-------SQLGLRRVPSNSFYGSAEFVHVEDEERL------------DRSTSSARDRSSIPIN---LGGGSSGRSSFFRASSARLTASLSGGSSREGRSGFVRNASTSSMWDD--MEQPSPQKEEEVFSMPACYN 423
            LV H+V+F+L + F+   Y TW Y    LA + A+ CSL+ L+ +   ++             + L   E   + LA         F  ++TVP+YQ+ ++ ++FG VVFWAA+    +  I+Y LLA    +PA+A+ D LLS  + FRL+Y+    L+NAAY    Y    T+  Y++ F+     + AF+AK  GLA A I   + +Y +TA   L   R      SA  K+   +    +A   +VS    +L       S   ++     +     E  H  DE+ +             +S+   R+R S+P     L    S R  +  +++ RL   +S  S  E            S+W++  ++     +E E F+MPA YN
Sbjct:    2 LVSHMVYFTLTSAFSPRLYATWAYAGLALAFVGAVFCSLMQLLREDIVKEAMRVDEEDGGHAADTLLGQEPVDRGLAR--------FVAQVTVPLYQVFVTVSVFGAVVFWAAILPVQSADISYPLLALNAIAPAVAVLDVLLSMSIEFRLVYVLLVALFNAAYAGTLYVFYKTDGIYVYNFINPSQEKGAFIAKTTGLAVASIVAGLFVYSVTAFSGLMFRRR-----SAEKKTKKGDKDDSTADVKSVSDKDVELESQVTLDSSQDVQSEEKRNISAPTEDSHEFDEDEVVVADMDEKSKGNSKSSMEKRNRHSVPTQSPELARSGSNRRWYRSSTAGRLQGVISLSSLAE----EAVEDRPISVWEEKGVDSAHAPQESEYFTMPAAYN 376          
BLAST of Gcaud2341.t1 vs. uniprot
Match: R7QCV6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCV6_CHOCR)

HSP 1 Score: 76.3 bits (186), Expect = 4.360e-12
Identity = 56/192 (29.17%), Postives = 98/192 (51.04%), Query Frame = 0
Query:  497 TLGVFAPSGQFNYEWLSTWVYIG---------QSSSI-----KPGQRVFRLLASSTVCMYQIFFSLSAGVDVIYWLVLKEKEGLK-ISRILLHAINFVLLFVDSFLSLRMAFHLTYVFVTIAIVATWLIFAWIRYAVTKQWVHQVLDFRVVGSARAATVHIIIFLTFFAVASLLLLVNRLNRLNFISRRIQS 673
            TL V++  G + Y++ S W +IG          +S++      P +     LA      +Q+F   +  +DV++W +L + +G    +++  HA+N V + +D  LS RM F L Y  V IA    +L FAWIR+A+T  WV+  LD+    +      +  + L  F  A +++LV++L+R   ++ R +S
Sbjct:    4 TLIVYSIRGVYTYQFYSIWCHIGIAIAFTLNASASALYLFSQSPRRDNITFLAFFIFLWFQVFAIAALFLDVVFWTILFDFDGSPTFAQLSQHAVNLVFVLLDLLLSARMQFKLLYGVVFIAYTIGYLTFAWIRFAITDDWVYGFLDYTDQSAGLTVAYYFGVLLWAFVAAFIMILVSKLSRCPCVTARKKS 195          
The following BLAST results are available for this feature:
BLAST of Gcaud2341.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J039_9FLOR2.510e-7748.60Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QCT6_CHOCR9.790e-2028.06Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QCV6_CHOCR4.360e-1229.17Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 386..414
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 386..405
NoneNo IPR availablePANTHERPTHR12242UNCHARACTERIZEDcoord: 528..663
NoneNo IPR availablePANTHERPTHR12242UNCHARACTERIZEDcoord: 21..291
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 197..207
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 484..502
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 659..724
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 638..658
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 248..268
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 177..196
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 48..67
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 619..637
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 208..228
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 172..176
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 269..483
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 590..594
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 79..100
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 541..559
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 560..570
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 503..540
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 101..149
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 229..247
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..47
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 68..78
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 150..171
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 595..618
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 571..589
NoneNo IPR availableTMHMMTMhelixcoord: 177..199
NoneNo IPR availableTMHMMTMhelixcoord: 483..505
NoneNo IPR availableTMHMMTMhelixcoord: 595..617
NoneNo IPR availableTMHMMTMhelixcoord: 150..172
NoneNo IPR availableTMHMMTMhelixcoord: 206..228
NoneNo IPR availableTMHMMTMhelixcoord: 637..659
NoneNo IPR availableTMHMMTMhelixcoord: 538..560
NoneNo IPR availableTMHMMTMhelixcoord: 48..67
NoneNo IPR availableTMHMMTMhelixcoord: 77..99
NoneNo IPR availableTMHMMTMhelixcoord: 248..270
IPR039860Protein rolling stonePANTHERPTHR12242:SF1IP08657P-RELATEDcoord: 528..663
IPR039860Protein rolling stonePANTHERPTHR12242:SF1IP08657P-RELATEDcoord: 21..291

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_48_length_65905_cov_4.503282contigNODE_48_length_65905_cov_4.503282:18861..22529 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2341.t1Gcaud2341.t1Gracilaria caudata M_176_S67 malemRNANODE_48_length_65905_cov_4.503282 18861..22529 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2341.t1 ID=Gcaud2341.t1|Name=Gcaud2341.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=725bp
MNASSDSDSVRSASPKKHSQLFHAPLLFQPHQATEASRSACLPLRAMLLS
RLFPAAALVGHLVFFSLHADFNFTEYLTWNYVATTLALLLALTCSLLDLI
HDHPDQQDNETSPFSNSTEQNVLDDVERQSQILAPSTEPKLLLFFTRITV
PVYQLALSATLFGTVVFWAAVYTNATIPITYALLAQAVASPAIALADFLL
SFRMNFRLIYLAPYILYNAAYLVVAYTLTERAYLFVFLRRDISRSAFVAK
AAGLAAACIFTAVLLYFITALRSLRSTRSLPDAISARSKSHMNEDRAESA
SGSAVSSHHSDLSQLGLRRVPSNSFYGSAEFVHVEDEERLDRSTSSARDR
SSIPINLGGGSSGRSSFFRASSARLTASLSGGSSREGRSGFVRNASTSSM
WDDMEQPSPQKEEEVFSMPACYNESQQSKVATSSLVSDSDTAAQIPRETR
DLAPDIRFPSCPTYKPHTLSEAGGSVWVSSRVILLWRLTCTWLFVFTLGV
FAPSGQFNYEWLSTWVYIGQSSSIKPGQRVFRLLASSTVCMYQIFFSLSA
GVDVIYWLVLKEKEGLKISRILLHAINFVLLFVDSFLSLRMAFHLTYVFV
TIAIVATWLIFAWIRYAVTKQWVHQVLDFRVVGSARAATVHIIIFLTFFA
VASLLLLVNRLNRLNFISRRIQSIIADELQVSFTSTTIDEENQGNDDLDY
ILFETQIKSDTGKSLKTINAPISS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039860Rost