Gcaud2356.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2356.t1
Unique Name	Gcaud2356.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	327

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_48_length_65905_cov_4.503282	contig	NODE_48_length_65905_cov_4.503282:52630..53610 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3711.Bra004287.1-P
PFAMs	zf-RING_2
Max annot lvl	33090\|Viridiplantae
KEGG ko	ko:K11982
Evalue	5.09e-06
EggNOG OGs	KOG0800@1\|root,KOG0800@2759\|Eukaryota,37TUP@33090\|Viridiplantae
EC	2.3.2.27
Description	Ring finger domain
COG category	O
BRITE	ko00000,ko01000,ko04121,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2356	Gcaud2356	Gracilaria caudata M_176_S67 male	gene	NODE_48_length_65905_cov_4.503282 52630..53610 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2356.t1.start1	Gcaud2356.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_48_length_65905_cov_4.503282 52630..52632 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2356.t1.CDS1	Gcaud2356.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_48_length_65905_cov_4.503282 52630..53610 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2356.t1.exon1	Gcaud2356.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_48_length_65905_cov_4.503282 52630..53610 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2356.t1.stop1	Gcaud2356.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_48_length_65905_cov_4.503282 53608..53610 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2356.t1	Gcaud2356.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_48_length_65905_cov_4.503282 52630..53610 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_48_length_65905_cov_4.503282:52630..53610+
coding sequence from alignment at NODE_48_length_65905_cov_4.503282:52630..53610+

mRNA sequence

>Gcaud2356.t1 ID=Gcaud2356.t1|Name=Gcaud2356.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=327bp
MRVLPTAQHALRQVTEISSTAFPSAIRTLASIIASITMVITIYLGYRKCM
RGRDGSFTADRGQEQAFSIPLTSYEEPGNAYSDEYLPVYVGGGRYVYVSR
NELPRDPPHTVRRDASVPPRFDANTLKQFEATNEEKQHPCPICLEELETE
PVSAGQCLHLMHTSCLTSWLNKDVNSNCPVCRVRIEESASFDMLRGKVIE
LPSLAHAPGERNGVVSIETGLRRQDGVILPATDNMASIQVETEAASQPVA
SEPTQNTRENNSESNGERDSSQQENAGRPSMSEVHTQSGVDNADVLATQQ
MGSSMVGGSGRISLLGNDQEVAVANK*

spliced messenger RNA

>Gcaud2356.t1 ID=Gcaud2356.t1|Name=Gcaud2356.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=981bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:52630..53610+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGTGTTGCCGACCGCGCAACATGCATTGCGACAAGTTACTGAAAT
ATCTTCAACCGCGTTCCCCTCCGCAATTCGCACACTTGCTTCGATTATTG
CATCCATAACAATGGTTATTACGATTTACCTTGGTTATCGCAAATGTATG
AGAGGCCGGGATGGTAGTTTTACCGCCGATCGAGGCCAAGAACAAGCATT
TTCCATTCCTCTCACGTCTTACGAAGAGCCCGGAAACGCTTATTCCGATG
AGTACTTGCCTGTCTATGTTGGGGGTGGAAGATATGTTTATGTATCACGA
AATGAGCTTCCTCGTGACCCTCCGCATACGGTGCGGAGGGATGCAAGCGT
TCCGCCACGTTTTGATGCGAACACTCTTAAGCAATTCGAAGCGACAAACG
AAGAAAAGCAACACCCCTGCCCAATATGTCTCGAAGAATTGGAAACGGAA
CCGGTGAGTGCCGGGCAATGCTTGCACCTTATGCACACCAGCTGTCTCAC
CAGCTGGTTGAACAAGGACGTAAATTCGAACTGTCCTGTTTGTCGAGTTC
GCATTGAAGAGAGCGCTTCTTTTGACATGTTAAGGGGTAAGGTAATCGAA
TTACCTTCTTTGGCTCACGCTCCGGGCGAAAGGAATGGGGTTGTGAGCAT
TGAAACGGGGCTTCGCAGACAGGACGGTGTGATACTGCCTGCGACTGACA
ATATGGCTAGTATACAGGTGGAAACGGAGGCTGCGTCACAACCTGTAGCA
AGTGAACCTACACAAAACACCCGCGAGAACAACAGCGAGAGCAACGGAGA
ACGGGATAGTTCACAACAGGAGAACGCAGGACGGCCTTCAATGAGTGAAG
TTCATACCCAGTCCGGGGTAGATAACGCTGACGTTTTGGCTACGCAACAG
ATGGGTTCATCGATGGTAGGCGGGTCTGGGAGGATAAGTTTGCTGGGTAA
CGACCAAGAGGTGGCTGTGGCGAACAAATAA

protein sequence of Gcaud2356.t1

>Gcaud2356.t1 ID=Gcaud2356.t1|Name=Gcaud2356.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=327bp
MRVLPTAQHALRQVTEISSTAFPSAIRTLASIIASITMVITIYLGYRKCM
RGRDGSFTADRGQEQAFSIPLTSYEEPGNAYSDEYLPVYVGGGRYVYVSR
NELPRDPPHTVRRDASVPPRFDANTLKQFEATNEEKQHPCPICLEELETE
PVSAGQCLHLMHTSCLTSWLNKDVNSNCPVCRVRIEESASFDMLRGKVIE
LPSLAHAPGERNGVVSIETGLRRQDGVILPATDNMASIQVETEAASQPVA
SEPTQNTRENNSESNGERDSSQQENAGRPSMSEVHTQSGVDNADVLATQQ
MGSSMVGGSGRISLLGNDQEVAVANK*

mRNA from alignment at NODE_48_length_65905_cov_4.503282:52630..53610+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2356.t1 ID=Gcaud2356.t1|Name=Gcaud2356.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=981bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:52630..53610+ (Gracilaria caudata M_176_S67 male)
ATGAGAGTGTTGCCGACCGCGCAACATGCATTGCGACAAGTTACTGAAAT
ATCTTCAACCGCGTTCCCCTCCGCAATTCGCACACTTGCTTCGATTATTG
CATCCATAACAATGGTTATTACGATTTACCTTGGTTATCGCAAATGTATG
AGAGGCCGGGATGGTAGTTTTACCGCCGATCGAGGCCAAGAACAAGCATT
TTCCATTCCTCTCACGTCTTACGAAGAGCCCGGAAACGCTTATTCCGATG
AGTACTTGCCTGTCTATGTTGGGGGTGGAAGATATGTTTATGTATCACGA
AATGAGCTTCCTCGTGACCCTCCGCATACGGTGCGGAGGGATGCAAGCGT
TCCGCCACGTTTTGATGCGAACACTCTTAAGCAATTCGAAGCGACAAACG
AAGAAAAGCAACACCCCTGCCCAATATGTCTCGAAGAATTGGAAACGGAA
CCGGTGAGTGCCGGGCAATGCTTGCACCTTATGCACACCAGCTGTCTCAC
CAGCTGGTTGAACAAGGACGTAAATTCGAACTGTCCTGTTTGTCGAGTTC
GCATTGAAGAGAGCGCTTCTTTTGACATGTTAAGGGGTAAGGTAATCGAA
TTACCTTCTTTGGCTCACGCTCCGGGCGAAAGGAATGGGGTTGTGAGCAT
TGAAACGGGGCTTCGCAGACAGGACGGTGTGATACTGCCTGCGACTGACA
ATATGGCTAGTATACAGGTGGAAACGGAGGCTGCGTCACAACCTGTAGCA
AGTGAACCTACACAAAACACCCGCGAGAACAACAGCGAGAGCAACGGAGA
ACGGGATAGTTCACAACAGGAGAACGCAGGACGGCCTTCAATGAGTGAAG
TTCATACCCAGTCCGGGGTAGATAACGCTGACGTTTTGGCTACGCAACAG
ATGGGTTCATCGATGGTAGGCGGGTCTGGGAGGATAAGTTTGCTGGGTAA
CGACCAAGAGGTGGCTGTGGCGAACAAATAA

Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:52630..53610+

>Gcaud2356.t1 ID=Gcaud2356.t1|Name=Gcaud2356.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=981bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:52630..53610+ (Gracilaria caudata M_176_S67 male)
ATGAGAGTGTTGCCGACCGCGCAACATGCATTGCGACAAGTTACTGAAAT
ATCTTCAACCGCGTTCCCCTCCGCAATTCGCACACTTGCTTCGATTATTG
CATCCATAACAATGGTTATTACGATTTACCTTGGTTATCGCAAATGTATG
AGAGGCCGGGATGGTAGTTTTACCGCCGATCGAGGCCAAGAACAAGCATT
TTCCATTCCTCTCACGTCTTACGAAGAGCCCGGAAACGCTTATTCCGATG
AGTACTTGCCTGTCTATGTTGGGGGTGGAAGATATGTTTATGTATCACGA
AATGAGCTTCCTCGTGACCCTCCGCATACGGTGCGGAGGGATGCAAGCGT
TCCGCCACGTTTTGATGCGAACACTCTTAAGCAATTCGAAGCGACAAACG
AAGAAAAGCAACACCCCTGCCCAATATGTCTCGAAGAATTGGAAACGGAA
CCGGTGAGTGCCGGGCAATGCTTGCACCTTATGCACACCAGCTGTCTCAC
CAGCTGGTTGAACAAGGACGTAAATTCGAACTGTCCTGTTTGTCGAGTTC
GCATTGAAGAGAGCGCTTCTTTTGACATGTTAAGGGGTAAGGTAATCGAA
TTACCTTCTTTGGCTCACGCTCCGGGCGAAAGGAATGGGGTTGTGAGCAT
TGAAACGGGGCTTCGCAGACAGGACGGTGTGATACTGCCTGCGACTGACA
ATATGGCTAGTATACAGGTGGAAACGGAGGCTGCGTCACAACCTGTAGCA
AGTGAACCTACACAAAACACCCGCGAGAACAACAGCGAGAGCAACGGAGA
ACGGGATAGTTCACAACAGGAGAACGCAGGACGGCCTTCAATGAGTGAAG
TTCATACCCAGTCCGGGGTAGATAACGCTGACGTTTTGGCTACGCAACAG
ATGGGTTCATCGATGGTAGGCGGGTCTGGGAGGATAAGTTTGCTGGGTAA
CGACCAAGAGGTGGCTGTGGCGAACAAATAA