Gcaud2348.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2348.t1
Unique Name	Gcaud2348.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	423

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_48_length_65905_cov_4.503282	contig	NODE_48_length_65905_cov_4.503282:33878..35146 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2348	Gcaud2348	Gracilaria caudata M_176_S67 male	gene	NODE_48_length_65905_cov_4.503282 33878..35146 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2348.t1.stop1	Gcaud2348.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_48_length_65905_cov_4.503282 33878..33880 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2348.t1.CDS1	Gcaud2348.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_48_length_65905_cov_4.503282 33878..35146 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2348.t1.exon1	Gcaud2348.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_48_length_65905_cov_4.503282 33878..35146 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2348.t1.start1	Gcaud2348.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_48_length_65905_cov_4.503282 35144..35146 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2348.t1	Gcaud2348.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_48_length_65905_cov_4.503282 33878..35146 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_48_length_65905_cov_4.503282:33878..35146-
coding sequence from alignment at NODE_48_length_65905_cov_4.503282:33878..35146-

mRNA sequence

>Gcaud2348.t1 ID=Gcaud2348.t1|Name=Gcaud2348.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=423bp
MMSSDGIGHSMCAVNLEFNLALNMNLTYTHRVGFYSSLSRYDRMAVEEFF
GWGVGEVPRTKIQTDGCSPEGGKWPEEHNLLDCHLCDKPLENGSLKIERI
VEVPSTLLNSNCPTQTWCRKELQIFLQENSLSNTIFQLPSSICSPLKTDA
NFLSTRNLFYNKYWNKHGRLPWKHTRDRYKGYNRYQKRVLPLSPRELNIA
VHIRRGDFLETKSSRKITKDKVFATIISRVLTVIGNVGGSLAAMPVAIHI
YSEGQLKKTNVFSTHTVELQDKEYYDHDGQPREESWWTSLITTTLRDDRY
SSCAWEGRFRVKFHISEDTLLSLHNMNVADVFIGSHSGMSTHLVWSISRG
VNLLPQPSSVDIEIGKKGYLCCSIPFKNDDGHFSLSTFRWYWEAYAYANE
ESAWHSLHVNNENESLSNTSSF*

spliced messenger RNA

>Gcaud2348.t1 ID=Gcaud2348.t1|Name=Gcaud2348.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:33878..35146- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGTCTAGTGACGGCATCGGACATTCAATGTGTGCGGTTAACCTCGA
ATTTAATCTTGCCCTCAACATGAATCTTACTTACACTCATAGGGTCGGGT
TCTACTCATCTTTGTCGCGATACGACAGAATGGCAGTGGAGGAATTCTTC
GGTTGGGGCGTTGGAGAGGTACCAAGAACGAAGATACAGACTGACGGCTG
TTCTCCCGAAGGAGGAAAATGGCCGGAAGAACACAATCTTCTCGATTGCC
ATCTTTGCGACAAACCTTTGGAAAACGGTAGTTTGAAAATTGAAAGAATA
GTGGAGGTTCCATCTACTTTGCTGAATTCCAACTGCCCGACTCAAACTTG
GTGCCGGAAAGAGCTTCAGATATTCCTTCAGGAGAATTCCTTGAGTAACA
CAATCTTCCAGCTACCATCTTCGATTTGCAGTCCGCTTAAAACTGATGCA
AATTTCCTTTCAACTCGAAACCTGTTTTACAACAAGTACTGGAATAAACA
TGGACGGCTGCCATGGAAACACACCCGCGATAGATACAAAGGATACAATC
GATACCAAAAACGAGTGTTGCCCCTCAGTCCACGAGAACTCAACATCGCA
GTTCATATACGTCGCGGAGACTTTTTGGAGACGAAGTCAAGCCGAAAGAT
TACGAAAGACAAGGTATTTGCCACAATCATAAGCAGGGTTCTAACAGTCA
TTGGAAATGTTGGAGGCAGTCTTGCAGCGATGCCAGTCGCGATCCACATA
TACAGCGAGGGACAGTTAAAGAAGACTAACGTGTTCTCAACGCATACGGT
AGAGCTGCAAGACAAAGAATACTACGACCATGATGGACAACCAAGGGAAG
AGAGTTGGTGGACTTCTTTGATTACAACAACCCTTAGAGATGATCGATAT
TCCTCTTGTGCGTGGGAGGGCCGATTCAGGGTCAAATTTCATATAAGCGA
GGACACTCTTCTATCTCTGCATAATATGAATGTTGCTGATGTGTTCATCG
GAAGCCATAGCGGTATGAGCACGCATTTAGTTTGGTCCATTTCCCGTGGT
GTTAATCTTCTTCCTCAGCCTAGTTCAGTTGACATCGAAATTGGAAAAAA
GGGGTATTTATGTTGTTCAATACCATTCAAGAACGACGATGGGCACTTTT
CGTTATCCACATTTCGGTGGTACTGGGAGGCCTACGCTTATGCGAATGAA
GAGTCTGCATGGCATTCTCTTCATGTGAACAATGAGAACGAATCGCTGTC
AAACACTTCGTCATTCTAA

protein sequence of Gcaud2348.t1

>Gcaud2348.t1 ID=Gcaud2348.t1|Name=Gcaud2348.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=423bp
MMSSDGIGHSMCAVNLEFNLALNMNLTYTHRVGFYSSLSRYDRMAVEEFF
GWGVGEVPRTKIQTDGCSPEGGKWPEEHNLLDCHLCDKPLENGSLKIERI
VEVPSTLLNSNCPTQTWCRKELQIFLQENSLSNTIFQLPSSICSPLKTDA
NFLSTRNLFYNKYWNKHGRLPWKHTRDRYKGYNRYQKRVLPLSPRELNIA
VHIRRGDFLETKSSRKITKDKVFATIISRVLTVIGNVGGSLAAMPVAIHI
YSEGQLKKTNVFSTHTVELQDKEYYDHDGQPREESWWTSLITTTLRDDRY
SSCAWEGRFRVKFHISEDTLLSLHNMNVADVFIGSHSGMSTHLVWSISRG
VNLLPQPSSVDIEIGKKGYLCCSIPFKNDDGHFSLSTFRWYWEAYAYANE
ESAWHSLHVNNENESLSNTSSF*

mRNA from alignment at NODE_48_length_65905_cov_4.503282:33878..35146-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2348.t1 ID=Gcaud2348.t1|Name=Gcaud2348.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:33878..35146- (Gracilaria caudata M_176_S67 male)
ATGATGTCTAGTGACGGCATCGGACATTCAATGTGTGCGGTTAACCTCGA
ATTTAATCTTGCCCTCAACATGAATCTTACTTACACTCATAGGGTCGGGT
TCTACTCATCTTTGTCGCGATACGACAGAATGGCAGTGGAGGAATTCTTC
GGTTGGGGCGTTGGAGAGGTACCAAGAACGAAGATACAGACTGACGGCTG
TTCTCCCGAAGGAGGAAAATGGCCGGAAGAACACAATCTTCTCGATTGCC
ATCTTTGCGACAAACCTTTGGAAAACGGTAGTTTGAAAATTGAAAGAATA
GTGGAGGTTCCATCTACTTTGCTGAATTCCAACTGCCCGACTCAAACTTG
GTGCCGGAAAGAGCTTCAGATATTCCTTCAGGAGAATTCCTTGAGTAACA
CAATCTTCCAGCTACCATCTTCGATTTGCAGTCCGCTTAAAACTGATGCA
AATTTCCTTTCAACTCGAAACCTGTTTTACAACAAGTACTGGAATAAACA
TGGACGGCTGCCATGGAAACACACCCGCGATAGATACAAAGGATACAATC
GATACCAAAAACGAGTGTTGCCCCTCAGTCCACGAGAACTCAACATCGCA
GTTCATATACGTCGCGGAGACTTTTTGGAGACGAAGTCAAGCCGAAAGAT
TACGAAAGACAAGGTATTTGCCACAATCATAAGCAGGGTTCTAACAGTCA
TTGGAAATGTTGGAGGCAGTCTTGCAGCGATGCCAGTCGCGATCCACATA
TACAGCGAGGGACAGTTAAAGAAGACTAACGTGTTCTCAACGCATACGGT
AGAGCTGCAAGACAAAGAATACTACGACCATGATGGACAACCAAGGGAAG
AGAGTTGGTGGACTTCTTTGATTACAACAACCCTTAGAGATGATCGATAT
TCCTCTTGTGCGTGGGAGGGCCGATTCAGGGTCAAATTTCATATAAGCGA
GGACACTCTTCTATCTCTGCATAATATGAATGTTGCTGATGTGTTCATCG
GAAGCCATAGCGGTATGAGCACGCATTTAGTTTGGTCCATTTCCCGTGGT
GTTAATCTTCTTCCTCAGCCTAGTTCAGTTGACATCGAAATTGGAAAAAA
GGGGTATTTATGTTGTTCAATACCATTCAAGAACGACGATGGGCACTTTT
CGTTATCCACATTTCGGTGGTACTGGGAGGCCTACGCTTATGCGAATGAA
GAGTCTGCATGGCATTCTCTTCATGTGAACAATGAGAACGAATCGCTGTC
AAACACTTCGTCATTCTAA

Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:33878..35146-

>Gcaud2348.t1 ID=Gcaud2348.t1|Name=Gcaud2348.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1269bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:33878..35146- (Gracilaria caudata M_176_S67 male)
ATGATGTCTAGTGACGGCATCGGACATTCAATGTGTGCGGTTAACCTCGA
ATTTAATCTTGCCCTCAACATGAATCTTACTTACACTCATAGGGTCGGGT
TCTACTCATCTTTGTCGCGATACGACAGAATGGCAGTGGAGGAATTCTTC
GGTTGGGGCGTTGGAGAGGTACCAAGAACGAAGATACAGACTGACGGCTG
TTCTCCCGAAGGAGGAAAATGGCCGGAAGAACACAATCTTCTCGATTGCC
ATCTTTGCGACAAACCTTTGGAAAACGGTAGTTTGAAAATTGAAAGAATA
GTGGAGGTTCCATCTACTTTGCTGAATTCCAACTGCCCGACTCAAACTTG
GTGCCGGAAAGAGCTTCAGATATTCCTTCAGGAGAATTCCTTGAGTAACA
CAATCTTCCAGCTACCATCTTCGATTTGCAGTCCGCTTAAAACTGATGCA
AATTTCCTTTCAACTCGAAACCTGTTTTACAACAAGTACTGGAATAAACA
TGGACGGCTGCCATGGAAACACACCCGCGATAGATACAAAGGATACAATC
GATACCAAAAACGAGTGTTGCCCCTCAGTCCACGAGAACTCAACATCGCA
GTTCATATACGTCGCGGAGACTTTTTGGAGACGAAGTCAAGCCGAAAGAT
TACGAAAGACAAGGTATTTGCCACAATCATAAGCAGGGTTCTAACAGTCA
TTGGAAATGTTGGAGGCAGTCTTGCAGCGATGCCAGTCGCGATCCACATA
TACAGCGAGGGACAGTTAAAGAAGACTAACGTGTTCTCAACGCATACGGT
AGAGCTGCAAGACAAAGAATACTACGACCATGATGGACAACCAAGGGAAG
AGAGTTGGTGGACTTCTTTGATTACAACAACCCTTAGAGATGATCGATAT
TCCTCTTGTGCGTGGGAGGGCCGATTCAGGGTCAAATTTCATATAAGCGA
GGACACTCTTCTATCTCTGCATAATATGAATGTTGCTGATGTGTTCATCG
GAAGCCATAGCGGTATGAGCACGCATTTAGTTTGGTCCATTTCCCGTGGT
GTTAATCTTCTTCCTCAGCCTAGTTCAGTTGACATCGAAATTGGAAAAAA
GGGGTATTTATGTTGTTCAATACCATTCAAGAACGACGATGGGCACTTTT
CGTTATCCACATTTCGGTGGTACTGGGAGGCCTACGCTTATGCGAATGAA
GAGTCTGCATGGCATTCTCTTCATGTGAACAATGAGAACGAATCGCTGTC
AAACACTTCGTCATTCTAA