Gcaud2362.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2362.t1
Unique Name	Gcaud2362.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	257

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_48_length_65905_cov_4.503282	contig	NODE_48_length_65905_cov_4.503282:62807..63577 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72658.Bostr.26527s0456.1.p
PFAMs	Pex19
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K13337
KEGG TC	3.A.20.1,9.A.17.1
KEGG Pathway	ko04146,map04146
GOs	GO:0000268,GO:0003674,GO:0005048,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005829,GO:0006605,GO:0006625,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0031090,GO:0031903,GO:0033036,GO:0033218,GO:0033328,GO:0033365,GO:0034613,GO:0042277,GO:0042579,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043574,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072662,GO:0072663,GO:0098588,GO:0098805
Evalue	8.86e-15
EggNOG OGs	KOG3133@1\|root,KOG3133@2759\|Eukaryota,37KG2@33090\|Viridiplantae,3GD2M@35493\|Streptophyta,3HUGS@3699\|Brassicales
Description	Peroxisome biogenesis protein
COG category	U
BRITE	ko00000,ko00001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2362	Gcaud2362	Gracilaria caudata M_176_S67 male	gene	NODE_48_length_65905_cov_4.503282 62807..63577 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2362.t1.stop1	Gcaud2362.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_48_length_65905_cov_4.503282 62807..62809 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2362.t1.CDS1	Gcaud2362.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_48_length_65905_cov_4.503282 62807..63577 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2362.t1.exon1	Gcaud2362.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_48_length_65905_cov_4.503282 62807..63577 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2362.t1.start1	Gcaud2362.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_48_length_65905_cov_4.503282 63575..63577 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2362.t1	Gcaud2362.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_48_length_65905_cov_4.503282 62807..63577 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_48_length_65905_cov_4.503282:62807..63577-
coding sequence from alignment at NODE_48_length_65905_cov_4.503282:62807..63577-

mRNA sequence

>Gcaud2362.t1 ID=Gcaud2362.t1|Name=Gcaud2362.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=257bp
MDDTELDGILDGALEAFDHVQDGSSAPSRATELSDVEEIARDMAPDTAIR
EESGTRSPVRNDETGKALEEALNALRELGVGEDQGREEVDEADMKLVEEF
MTSLSSSLGNLAPQNPLDERPPGAAQASEAEHVNGGRPEVEKLVDTIVGQ
LLSEDVLKLPMMHMRTAYEEWLPKNIDALSAEERERYTKQQELVRQICAK
YEAKADSAEIMELLSKMQDTGSPPDAVLQNLDTAAPGSPSFQASDIEKFG
EMCPMQ*

spliced messenger RNA

>Gcaud2362.t1 ID=Gcaud2362.t1|Name=Gcaud2362.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=771bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:62807..63577- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGACACGGAGCTTGACGGTATTCTAGACGGTGCTCTAGAAGCATT
TGATCATGTGCAGGATGGTTCTTCAGCCCCCTCCAGAGCGACAGAACTAT
CGGACGTCGAAGAGATTGCGCGAGATATGGCTCCAGACACAGCTATACGA
GAAGAAAGTGGGACGAGATCGCCCGTGCGCAATGATGAGACTGGAAAGGC
TCTAGAAGAGGCTTTGAATGCTCTTCGTGAGTTGGGAGTGGGCGAAGACC
AAGGAAGAGAAGAAGTTGATGAAGCAGATATGAAATTGGTCGAAGAATTT
ATGACAAGCCTGTCATCATCACTGGGCAATCTCGCTCCACAAAATCCATT
AGATGAACGACCGCCTGGAGCTGCACAAGCGAGTGAAGCTGAACACGTCA
ACGGTGGCCGGCCGGAAGTCGAGAAGTTGGTCGATACTATTGTCGGCCAA
CTGCTTTCCGAAGACGTACTGAAGTTGCCAATGATGCACATGCGCACTGC
GTATGAAGAATGGCTCCCGAAAAACATCGATGCATTATCAGCAGAAGAGC
GAGAGCGGTATACCAAACAACAAGAATTGGTACGGCAAATCTGTGCGAAA
TATGAAGCCAAAGCGGATTCCGCAGAAATCATGGAGCTCTTGTCCAAAAT
GCAGGACACGGGGTCACCCCCGGACGCAGTGCTACAGAATCTCGATACCG
CTGCGCCTGGTTCCCCGTCTTTTCAAGCTTCGGATATAGAGAAGTTTGGT
GAAATGTGTCCGATGCAGTAG

protein sequence of Gcaud2362.t1

>Gcaud2362.t1 ID=Gcaud2362.t1|Name=Gcaud2362.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=257bp
MDDTELDGILDGALEAFDHVQDGSSAPSRATELSDVEEIARDMAPDTAIR
EESGTRSPVRNDETGKALEEALNALRELGVGEDQGREEVDEADMKLVEEF
MTSLSSSLGNLAPQNPLDERPPGAAQASEAEHVNGGRPEVEKLVDTIVGQ
LLSEDVLKLPMMHMRTAYEEWLPKNIDALSAEERERYTKQQELVRQICAK
YEAKADSAEIMELLSKMQDTGSPPDAVLQNLDTAAPGSPSFQASDIEKFG
EMCPMQ*

mRNA from alignment at NODE_48_length_65905_cov_4.503282:62807..63577-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2362.t1 ID=Gcaud2362.t1|Name=Gcaud2362.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=771bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:62807..63577- (Gracilaria caudata M_176_S67 male)
ATGGATGACACGGAGCTTGACGGTATTCTAGACGGTGCTCTAGAAGCATT
TGATCATGTGCAGGATGGTTCTTCAGCCCCCTCCAGAGCGACAGAACTAT
CGGACGTCGAAGAGATTGCGCGAGATATGGCTCCAGACACAGCTATACGA
GAAGAAAGTGGGACGAGATCGCCCGTGCGCAATGATGAGACTGGAAAGGC
TCTAGAAGAGGCTTTGAATGCTCTTCGTGAGTTGGGAGTGGGCGAAGACC
AAGGAAGAGAAGAAGTTGATGAAGCAGATATGAAATTGGTCGAAGAATTT
ATGACAAGCCTGTCATCATCACTGGGCAATCTCGCTCCACAAAATCCATT
AGATGAACGACCGCCTGGAGCTGCACAAGCGAGTGAAGCTGAACACGTCA
ACGGTGGCCGGCCGGAAGTCGAGAAGTTGGTCGATACTATTGTCGGCCAA
CTGCTTTCCGAAGACGTACTGAAGTTGCCAATGATGCACATGCGCACTGC
GTATGAAGAATGGCTCCCGAAAAACATCGATGCATTATCAGCAGAAGAGC
GAGAGCGGTATACCAAACAACAAGAATTGGTACGGCAAATCTGTGCGAAA
TATGAAGCCAAAGCGGATTCCGCAGAAATCATGGAGCTCTTGTCCAAAAT
GCAGGACACGGGGTCACCCCCGGACGCAGTGCTACAGAATCTCGATACCG
CTGCGCCTGGTTCCCCGTCTTTTCAAGCTTCGGATATAGAGAAGTTTGGT
GAAATGTGTCCGATGCAGTAG

Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:62807..63577-

>Gcaud2362.t1 ID=Gcaud2362.t1|Name=Gcaud2362.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=771bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:62807..63577- (Gracilaria caudata M_176_S67 male)
ATGGATGACACGGAGCTTGACGGTATTCTAGACGGTGCTCTAGAAGCATT
TGATCATGTGCAGGATGGTTCTTCAGCCCCCTCCAGAGCGACAGAACTAT
CGGACGTCGAAGAGATTGCGCGAGATATGGCTCCAGACACAGCTATACGA
GAAGAAAGTGGGACGAGATCGCCCGTGCGCAATGATGAGACTGGAAAGGC
TCTAGAAGAGGCTTTGAATGCTCTTCGTGAGTTGGGAGTGGGCGAAGACC
AAGGAAGAGAAGAAGTTGATGAAGCAGATATGAAATTGGTCGAAGAATTT
ATGACAAGCCTGTCATCATCACTGGGCAATCTCGCTCCACAAAATCCATT
AGATGAACGACCGCCTGGAGCTGCACAAGCGAGTGAAGCTGAACACGTCA
ACGGTGGCCGGCCGGAAGTCGAGAAGTTGGTCGATACTATTGTCGGCCAA
CTGCTTTCCGAAGACGTACTGAAGTTGCCAATGATGCACATGCGCACTGC
GTATGAAGAATGGCTCCCGAAAAACATCGATGCATTATCAGCAGAAGAGC
GAGAGCGGTATACCAAACAACAAGAATTGGTACGGCAAATCTGTGCGAAA
TATGAAGCCAAAGCGGATTCCGCAGAAATCATGGAGCTCTTGTCCAAAAT
GCAGGACACGGGGTCACCCCCGGACGCAGTGCTACAGAATCTCGATACCG
CTGCGCCTGGTTCCCCGTCTTTTCAAGCTTCGGATATAGAGAAGTTTGGT
GAAATGTGTCCGATGCAGTAG