Gcaud2355.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2355.t1
Unique NameGcaud2355.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length139
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_48_length_65905_cov_4.503282contigNODE_48_length_65905_cov_4.503282:49454..49870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2355Gcaud2355Gracilaria caudata M_176_S67 malegeneNODE_48_length_65905_cov_4.503282 49454..49870 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2355.t1.start1Gcaud2355.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_48_length_65905_cov_4.503282 49454..49456 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2355.t1.CDS1Gcaud2355.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_48_length_65905_cov_4.503282 49454..49870 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2355.t1.exon1Gcaud2355.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_48_length_65905_cov_4.503282 49454..49870 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2355.t1.stop1Gcaud2355.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_48_length_65905_cov_4.503282 49868..49870 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2355.t1Gcaud2355.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_48_length_65905_cov_4.503282 49454..49870 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2355.t1 ID=Gcaud2355.t1|Name=Gcaud2355.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=139bp
MDAFGRQQVDAAASPSVLPRPTDDAVPQATPDDDLEPVVSPETLDAGVDP
VKAGERTNSFDFDVVEVIIALVVILACAVVAHFVIVRWRRRRSARNAQYL
PTSVPPGTNSLHPDQDAYEQSAPQQLPHMYRAANPNAI*
back to top

spliced messenger RNA

>Gcaud2355.t1 ID=Gcaud2355.t1|Name=Gcaud2355.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=417bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:49454..49870+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCTTTCGGTCGACAGCAGGTGGACGCCGCCGCGTCACCGTCCGT
GTTGCCGCGGCCCACCGATGACGCCGTGCCGCAGGCCACGCCCGACGACG
ATCTGGAGCCTGTAGTGTCGCCGGAGACGCTGGACGCCGGCGTCGACCCC
GTCAAGGCCGGCGAGCGCACCAACTCGTTCGACTTCGATGTGGTGGAGGT
CATCATCGCTCTGGTGGTCATCTTGGCGTGCGCCGTGGTCGCCCATTTTG
TCATCGTGCGCTGGAGGAGAAGAAGAAGTGCCAGGAACGCACAGTACCTG
CCCACATCCGTGCCGCCCGGTACCAACAGTCTGCACCCGGACCAGGACGC
GTACGAGCAGAGTGCTCCCCAACAACTGCCGCACATGTACCGCGCCGCTA
ATCCCAACGCCATTTGA
back to top

protein sequence of Gcaud2355.t1

>Gcaud2355.t1 ID=Gcaud2355.t1|Name=Gcaud2355.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=139bp
MDAFGRQQVDAAASPSVLPRPTDDAVPQATPDDDLEPVVSPETLDAGVDP
VKAGERTNSFDFDVVEVIIALVVILACAVVAHFVIVRWRRRRSARNAQYL
PTSVPPGTNSLHPDQDAYEQSAPQQLPHMYRAANPNAI*
back to top

mRNA from alignment at NODE_48_length_65905_cov_4.503282:49454..49870+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2355.t1 ID=Gcaud2355.t1|Name=Gcaud2355.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=417bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:49454..49870+ (Gracilaria caudata M_176_S67 male)
ATGGACGCTTTCGGTCGACAGCAGGTGGACGCCGCCGCGTCACCGTCCGT
GTTGCCGCGGCCCACCGATGACGCCGTGCCGCAGGCCACGCCCGACGACG
ATCTGGAGCCTGTAGTGTCGCCGGAGACGCTGGACGCCGGCGTCGACCCC
GTCAAGGCCGGCGAGCGCACCAACTCGTTCGACTTCGATGTGGTGGAGGT
CATCATCGCTCTGGTGGTCATCTTGGCGTGCGCCGTGGTCGCCCATTTTG
TCATCGTGCGCTGGAGGAGAAGAAGAAGTGCCAGGAACGCACAGTACCTG
CCCACATCCGTGCCGCCCGGTACCAACAGTCTGCACCCGGACCAGGACGC
GTACGAGCAGAGTGCTCCCCAACAACTGCCGCACATGTACCGCGCCGCTA
ATCCCAACGCCATTTGA
back to top

Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:49454..49870+

>Gcaud2355.t1 ID=Gcaud2355.t1|Name=Gcaud2355.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=417bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:49454..49870+ (Gracilaria caudata M_176_S67 male)
ATGGACGCTTTCGGTCGACAGCAGGTGGACGCCGCCGCGTCACCGTCCGT
GTTGCCGCGGCCCACCGATGACGCCGTGCCGCAGGCCACGCCCGACGACG
ATCTGGAGCCTGTAGTGTCGCCGGAGACGCTGGACGCCGGCGTCGACCCC
GTCAAGGCCGGCGAGCGCACCAACTCGTTCGACTTCGATGTGGTGGAGGT
CATCATCGCTCTGGTGGTCATCTTGGCGTGCGCCGTGGTCGCCCATTTTG
TCATCGTGCGCTGGAGGAGAAGAAGAAGTGCCAGGAACGCACAGTACCTG
CCCACATCCGTGCCGCCCGGTACCAACAGTCTGCACCCGGACCAGGACGC
GTACGAGCAGAGTGCTCCCCAACAACTGCCGCACATGTACCGCGCCGCTA
ATCCCAACGCCATTTGA
back to top