Gcaud2337.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2337.t2
Unique Name	Gcaud2337.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	303

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_48_length_65905_cov_4.503282	contig	NODE_48_length_65905_cov_4.503282:7534..8442 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1205910.B005_1344
PFAMs	MOSC,MOSC_N
Max annot lvl	201174\|Actinobacteria
KEGG ko	ko:K07140
Evalue	8.1e-09
EggNOG OGs	COG3217@1\|root,COG3217@2\|Bacteria,2GPWY@201174\|Actinobacteria,4EKBY@85012\|Streptosporangiales
Description	MOSC N-terminal beta barrel domain
COG category	S
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2337	Gcaud2337	Gracilaria caudata M_176_S67 male	gene	NODE_48_length_65905_cov_4.503282 7534..8838 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2337.t2.stop1	Gcaud2337.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_48_length_65905_cov_4.503282 7534..7536 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2337.t2.CDS1	Gcaud2337.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_48_length_65905_cov_4.503282 7534..8442 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2337.t2.exon1	Gcaud2337.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_48_length_65905_cov_4.503282 7534..8442 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2337.t2.start1	Gcaud2337.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_48_length_65905_cov_4.503282 8440..8442 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2337.t2	Gcaud2337.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_48_length_65905_cov_4.503282 7534..8442 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_48_length_65905_cov_4.503282:7534..8442-
coding sequence from alignment at NODE_48_length_65905_cov_4.503282:7534..8442-

mRNA sequence

>Gcaud2337.t2 ID=Gcaud2337.t2|Name=Gcaud2337.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=303bp
LANPDAQSCTSETHDQGLQNDLEHLSTALTQEEEKLVSVGQTTAVEQAGD
KEQGRVSIIHLYIQPIHGCPPQAVTSIRLTQHGVENHLMYAVSDFTGRYI
SNEKVPVLSEVTPTILENGHLRLSAPGLSTLMHEPKFWGQKMKITIHGIQ
YEAVDQGDGVSQFFASYLEIPGARLLLIRPPPVSDKGHRLFRTWPTADRP
LLLIGKEEKGASAVDNGRALVGTNVVISASESDLTSSTSIKIDDYLFEIV
KIPSESSYERVPPHHLLGGREALVPVNLGRNEWVVKEDQTVIIKNSGVDQ
SP*

spliced messenger RNA

>Gcaud2337.t2 ID=Gcaud2337.t2|Name=Gcaud2337.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=909bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:7534..8442- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGCGAATCCGGACGCGCAGTCATGCACATCCGAGACTCACGATCAAGG
GCTACAAAATGATCTTGAGCACCTAAGCACCGCTCTGACACAGGAAGAGG
AAAAGCTTGTATCTGTTGGCCAAACCACCGCTGTGGAACAAGCCGGTGAT
AAAGAGCAAGGAAGAGTTAGTATTATTCACCTCTACATTCAACCCATTCA
TGGTTGTCCTCCGCAGGCCGTGACTTCAATAAGACTCACCCAACATGGCG
TTGAAAACCATCTCATGTACGCTGTTTCCGACTTTACCGGTCGATACATT
TCGAACGAGAAAGTTCCAGTGCTTTCGGAAGTTACCCCTACTATTCTAGA
GAACGGTCATTTGCGTCTTTCTGCGCCAGGTCTATCGACATTAATGCACG
AACCGAAGTTCTGGGGTCAGAAAATGAAGATTACCATCCACGGCATTCAA
TATGAAGCTGTGGATCAGGGTGATGGTGTGTCACAGTTCTTTGCCAGCTA
TTTGGAAATACCAGGAGCACGTCTCTTGTTGATTCGACCACCTCCGGTCT
CAGACAAAGGCCATCGTCTGTTCAGGACCTGGCCTACTGCCGATCGGCCG
CTGCTTCTGATAGGCAAAGAAGAAAAAGGAGCTTCCGCCGTAGACAATGG
TCGTGCACTTGTAGGAACTAATGTAGTGATTTCTGCTTCAGAGTCGGATT
TAACGAGCTCTACATCCATCAAAATCGATGATTATCTCTTTGAAATCGTG
AAGATTCCCAGTGAGAGCTCTTATGAAAGAGTTCCTCCACATCACCTTCT
GGGAGGGAGAGAGGCTTTGGTTCCTGTCAACTTGGGAAGAAACGAATGGG
TGGTAAAGGAGGATCAGACCGTTATCATCAAGAACTCTGGTGTGGACCAG
AGCCCCTAA

protein sequence of Gcaud2337.t2

>Gcaud2337.t2 ID=Gcaud2337.t2|Name=Gcaud2337.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=303bp
LANPDAQSCTSETHDQGLQNDLEHLSTALTQEEEKLVSVGQTTAVEQAGD
KEQGRVSIIHLYIQPIHGCPPQAVTSIRLTQHGVENHLMYAVSDFTGRYI
SNEKVPVLSEVTPTILENGHLRLSAPGLSTLMHEPKFWGQKMKITIHGIQ
YEAVDQGDGVSQFFASYLEIPGARLLLIRPPPVSDKGHRLFRTWPTADRP
LLLIGKEEKGASAVDNGRALVGTNVVISASESDLTSSTSIKIDDYLFEIV
KIPSESSYERVPPHHLLGGREALVPVNLGRNEWVVKEDQTVIIKNSGVDQ
SP*

mRNA from alignment at NODE_48_length_65905_cov_4.503282:7534..8442-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2337.t2 ID=Gcaud2337.t2|Name=Gcaud2337.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=909bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:7534..8442- (Gracilaria caudata M_176_S67 male)
TTGGCGAATCCGGACGCGCAGTCATGCACATCCGAGACTCACGATCAAGG
GCTACAAAATGATCTTGAGCACCTAAGCACCGCTCTGACACAGGAAGAGG
AAAAGCTTGTATCTGTTGGCCAAACCACCGCTGTGGAACAAGCCGGTGAT
AAAGAGCAAGGAAGAGTTAGTATTATTCACCTCTACATTCAACCCATTCA
TGGTTGTCCTCCGCAGGCCGTGACTTCAATAAGACTCACCCAACATGGCG
TTGAAAACCATCTCATGTACGCTGTTTCCGACTTTACCGGTCGATACATT
TCGAACGAGAAAGTTCCAGTGCTTTCGGAAGTTACCCCTACTATTCTAGA
GAACGGTCATTTGCGTCTTTCTGCGCCAGGTCTATCGACATTAATGCACG
AACCGAAGTTCTGGGGTCAGAAAATGAAGATTACCATCCACGGCATTCAA
TATGAAGCTGTGGATCAGGGTGATGGTGTGTCACAGTTCTTTGCCAGCTA
TTTGGAAATACCAGGAGCACGTCTCTTGTTGATTCGACCACCTCCGGTCT
CAGACAAAGGCCATCGTCTGTTCAGGACCTGGCCTACTGCCGATCGGCCG
CTGCTTCTGATAGGCAAAGAAGAAAAAGGAGCTTCCGCCGTAGACAATGG
TCGTGCACTTGTAGGAACTAATGTAGTGATTTCTGCTTCAGAGTCGGATT
TAACGAGCTCTACATCCATCAAAATCGATGATTATCTCTTTGAAATCGTG
AAGATTCCCAGTGAGAGCTCTTATGAAAGAGTTCCTCCACATCACCTTCT
GGGAGGGAGAGAGGCTTTGGTTCCTGTCAACTTGGGAAGAAACGAATGGG
TGGTAAAGGAGGATCAGACCGTTATCATCAAGAACTCTGGTGTGGACCAG
AGCCCCTAA

Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:7534..8442-

>Gcaud2337.t2 ID=Gcaud2337.t2|Name=Gcaud2337.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=909bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:7534..8442- (Gracilaria caudata M_176_S67 male)
TTGGCGAATCCGGACGCGCAGTCATGCACATCCGAGACTCACGATCAAGG
GCTACAAAATGATCTTGAGCACCTAAGCACCGCTCTGACACAGGAAGAGG
AAAAGCTTGTATCTGTTGGCCAAACCACCGCTGTGGAACAAGCCGGTGAT
AAAGAGCAAGGAAGAGTTAGTATTATTCACCTCTACATTCAACCCATTCA
TGGTTGTCCTCCGCAGGCCGTGACTTCAATAAGACTCACCCAACATGGCG
TTGAAAACCATCTCATGTACGCTGTTTCCGACTTTACCGGTCGATACATT
TCGAACGAGAAAGTTCCAGTGCTTTCGGAAGTTACCCCTACTATTCTAGA
GAACGGTCATTTGCGTCTTTCTGCGCCAGGTCTATCGACATTAATGCACG
AACCGAAGTTCTGGGGTCAGAAAATGAAGATTACCATCCACGGCATTCAA
TATGAAGCTGTGGATCAGGGTGATGGTGTGTCACAGTTCTTTGCCAGCTA
TTTGGAAATACCAGGAGCACGTCTCTTGTTGATTCGACCACCTCCGGTCT
CAGACAAAGGCCATCGTCTGTTCAGGACCTGGCCTACTGCCGATCGGCCG
CTGCTTCTGATAGGCAAAGAAGAAAAAGGAGCTTCCGCCGTAGACAATGG
TCGTGCACTTGTAGGAACTAATGTAGTGATTTCTGCTTCAGAGTCGGATT
TAACGAGCTCTACATCCATCAAAATCGATGATTATCTCTTTGAAATCGTG
AAGATTCCCAGTGAGAGCTCTTATGAAAGAGTTCCTCCACATCACCTTCT
GGGAGGGAGAGAGGCTTTGGTTCCTGTCAACTTGGGAAGAAACGAATGGG
TGGTAAAGGAGGATCAGACCGTTATCATCAAGAACTCTGGTGTGGACCAG
AGCCCCTAA