Gcaud2337.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2337.t1
Unique Name	Gcaud2337.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	435

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_48_length_65905_cov_4.503282	contig	NODE_48_length_65905_cov_4.503282:7534..8838 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1205910.B005_1344
PFAMs	MOSC,MOSC_N
Max annot lvl	201174\|Actinobacteria
KEGG ko	ko:K07140
Evalue	1.87e-08
EggNOG OGs	COG3217@1\|root,COG3217@2\|Bacteria,2GPWY@201174\|Actinobacteria,4EKBY@85012\|Streptosporangiales
Description	MOSC N-terminal beta barrel domain
COG category	S
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2337	Gcaud2337	Gracilaria caudata M_176_S67 male	gene	NODE_48_length_65905_cov_4.503282 7534..8838 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2337.t1.stop1	Gcaud2337.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_48_length_65905_cov_4.503282 7534..7536 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2337.t1.CDS1	Gcaud2337.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_48_length_65905_cov_4.503282 7534..8838 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2337.t1.exon1	Gcaud2337.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_48_length_65905_cov_4.503282 7534..8838 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2337.t1.start1	Gcaud2337.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_48_length_65905_cov_4.503282 8836..8838 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2337.t1	Gcaud2337.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_48_length_65905_cov_4.503282 7534..8838 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_48_length_65905_cov_4.503282:7534..8838-
coding sequence from alignment at NODE_48_length_65905_cov_4.503282:7534..8838-

mRNA sequence

>Gcaud2337.t1 ID=Gcaud2337.t1|Name=Gcaud2337.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=435bp
MTHQSGLLLLRAQDASAAIAFASRFALVCIANFAFGFGAGYLYAQYRNIC
TSEVEDNYAASESDKASVTQEVTTKSEQHSTIVSDSFVEEQHDSFERATR
NFMDSEQSEAEPKSPPGTPLRADDESQPTRRVLANPDAQSCTSETHDQGL
QNDLEHLSTALTQEEEKLVSVGQTTAVEQAGDKEQGRVSIIHLYIQPIHG
CPPQAVTSIRLTQHGVENHLMYAVSDFTGRYISNEKVPVLSEVTPTILEN
GHLRLSAPGLSTLMHEPKFWGQKMKITIHGIQYEAVDQGDGVSQFFASYL
EIPGARLLLIRPPPVSDKGHRLFRTWPTADRPLLLIGKEEKGASAVDNGR
ALVGTNVVISASESDLTSSTSIKIDDYLFEIVKIPSESSYERVPPHHLLG
GREALVPVNLGRNEWVVKEDQTVIIKNSGVDQSP*

spliced messenger RNA

>Gcaud2337.t1 ID=Gcaud2337.t1|Name=Gcaud2337.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:7534..8838- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACACCAGTCAGGTTTACTCCTCCTCCGTGCGCAAGACGCGTCTGC
CGCCATCGCGTTTGCCTCTCGTTTTGCCCTTGTTTGCATTGCGAACTTCG
CCTTTGGTTTTGGCGCTGGTTATCTCTATGCCCAGTACCGAAACATCTGC
ACATCGGAGGTGGAAGATAATTATGCCGCTTCAGAAAGTGATAAAGCATC
TGTCACTCAAGAAGTAACTACTAAGAGTGAACAACACTCGACAATAGTTT
CTGACTCATTTGTCGAAGAGCAGCATGATTCTTTCGAACGGGCTACAAGA
AATTTTATGGACTCTGAACAGTCTGAAGCAGAGCCAAAGTCGCCACCAGG
GACCCCGCTGAGGGCTGATGATGAATCCCAACCGACGAGGCGAGTTTTGG
CGAATCCGGACGCGCAGTCATGCACATCCGAGACTCACGATCAAGGGCTA
CAAAATGATCTTGAGCACCTAAGCACCGCTCTGACACAGGAAGAGGAAAA
GCTTGTATCTGTTGGCCAAACCACCGCTGTGGAACAAGCCGGTGATAAAG
AGCAAGGAAGAGTTAGTATTATTCACCTCTACATTCAACCCATTCATGGT
TGTCCTCCGCAGGCCGTGACTTCAATAAGACTCACCCAACATGGCGTTGA
AAACCATCTCATGTACGCTGTTTCCGACTTTACCGGTCGATACATTTCGA
ACGAGAAAGTTCCAGTGCTTTCGGAAGTTACCCCTACTATTCTAGAGAAC
GGTCATTTGCGTCTTTCTGCGCCAGGTCTATCGACATTAATGCACGAACC
GAAGTTCTGGGGTCAGAAAATGAAGATTACCATCCACGGCATTCAATATG
AAGCTGTGGATCAGGGTGATGGTGTGTCACAGTTCTTTGCCAGCTATTTG
GAAATACCAGGAGCACGTCTCTTGTTGATTCGACCACCTCCGGTCTCAGA
CAAAGGCCATCGTCTGTTCAGGACCTGGCCTACTGCCGATCGGCCGCTGC
TTCTGATAGGCAAAGAAGAAAAAGGAGCTTCCGCCGTAGACAATGGTCGT
GCACTTGTAGGAACTAATGTAGTGATTTCTGCTTCAGAGTCGGATTTAAC
GAGCTCTACATCCATCAAAATCGATGATTATCTCTTTGAAATCGTGAAGA
TTCCCAGTGAGAGCTCTTATGAAAGAGTTCCTCCACATCACCTTCTGGGA
GGGAGAGAGGCTTTGGTTCCTGTCAACTTGGGAAGAAACGAATGGGTGGT
AAAGGAGGATCAGACCGTTATCATCAAGAACTCTGGTGTGGACCAGAGCC
CCTAA

protein sequence of Gcaud2337.t1

>Gcaud2337.t1 ID=Gcaud2337.t1|Name=Gcaud2337.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=435bp
MTHQSGLLLLRAQDASAAIAFASRFALVCIANFAFGFGAGYLYAQYRNIC
TSEVEDNYAASESDKASVTQEVTTKSEQHSTIVSDSFVEEQHDSFERATR
NFMDSEQSEAEPKSPPGTPLRADDESQPTRRVLANPDAQSCTSETHDQGL
QNDLEHLSTALTQEEEKLVSVGQTTAVEQAGDKEQGRVSIIHLYIQPIHG
CPPQAVTSIRLTQHGVENHLMYAVSDFTGRYISNEKVPVLSEVTPTILEN
GHLRLSAPGLSTLMHEPKFWGQKMKITIHGIQYEAVDQGDGVSQFFASYL
EIPGARLLLIRPPPVSDKGHRLFRTWPTADRPLLLIGKEEKGASAVDNGR
ALVGTNVVISASESDLTSSTSIKIDDYLFEIVKIPSESSYERVPPHHLLG
GREALVPVNLGRNEWVVKEDQTVIIKNSGVDQSP*

mRNA from alignment at NODE_48_length_65905_cov_4.503282:7534..8838-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2337.t1 ID=Gcaud2337.t1|Name=Gcaud2337.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:7534..8838- (Gracilaria caudata M_176_S67 male)
ATGACACACCAGTCAGGTTTACTCCTCCTCCGTGCGCAAGACGCGTCTGC
CGCCATCGCGTTTGCCTCTCGTTTTGCCCTTGTTTGCATTGCGAACTTCG
CCTTTGGTTTTGGCGCTGGTTATCTCTATGCCCAGTACCGAAACATCTGC
ACATCGGAGGTGGAAGATAATTATGCCGCTTCAGAAAGTGATAAAGCATC
TGTCACTCAAGAAGTAACTACTAAGAGTGAACAACACTCGACAATAGTTT
CTGACTCATTTGTCGAAGAGCAGCATGATTCTTTCGAACGGGCTACAAGA
AATTTTATGGACTCTGAACAGTCTGAAGCAGAGCCAAAGTCGCCACCAGG
GACCCCGCTGAGGGCTGATGATGAATCCCAACCGACGAGGCGAGTTTTGG
CGAATCCGGACGCGCAGTCATGCACATCCGAGACTCACGATCAAGGGCTA
CAAAATGATCTTGAGCACCTAAGCACCGCTCTGACACAGGAAGAGGAAAA
GCTTGTATCTGTTGGCCAAACCACCGCTGTGGAACAAGCCGGTGATAAAG
AGCAAGGAAGAGTTAGTATTATTCACCTCTACATTCAACCCATTCATGGT
TGTCCTCCGCAGGCCGTGACTTCAATAAGACTCACCCAACATGGCGTTGA
AAACCATCTCATGTACGCTGTTTCCGACTTTACCGGTCGATACATTTCGA
ACGAGAAAGTTCCAGTGCTTTCGGAAGTTACCCCTACTATTCTAGAGAAC
GGTCATTTGCGTCTTTCTGCGCCAGGTCTATCGACATTAATGCACGAACC
GAAGTTCTGGGGTCAGAAAATGAAGATTACCATCCACGGCATTCAATATG
AAGCTGTGGATCAGGGTGATGGTGTGTCACAGTTCTTTGCCAGCTATTTG
GAAATACCAGGAGCACGTCTCTTGTTGATTCGACCACCTCCGGTCTCAGA
CAAAGGCCATCGTCTGTTCAGGACCTGGCCTACTGCCGATCGGCCGCTGC
TTCTGATAGGCAAAGAAGAAAAAGGAGCTTCCGCCGTAGACAATGGTCGT
GCACTTGTAGGAACTAATGTAGTGATTTCTGCTTCAGAGTCGGATTTAAC
GAGCTCTACATCCATCAAAATCGATGATTATCTCTTTGAAATCGTGAAGA
TTCCCAGTGAGAGCTCTTATGAAAGAGTTCCTCCACATCACCTTCTGGGA
GGGAGAGAGGCTTTGGTTCCTGTCAACTTGGGAAGAAACGAATGGGTGGT
AAAGGAGGATCAGACCGTTATCATCAAGAACTCTGGTGTGGACCAGAGCC
CCTAA

Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:7534..8838-

>Gcaud2337.t1 ID=Gcaud2337.t1|Name=Gcaud2337.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1305bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:7534..8838- (Gracilaria caudata M_176_S67 male)
ATGACACACCAGTCAGGTTTACTCCTCCTCCGTGCGCAAGACGCGTCTGC
CGCCATCGCGTTTGCCTCTCGTTTTGCCCTTGTTTGCATTGCGAACTTCG
CCTTTGGTTTTGGCGCTGGTTATCTCTATGCCCAGTACCGAAACATCTGC
ACATCGGAGGTGGAAGATAATTATGCCGCTTCAGAAAGTGATAAAGCATC
TGTCACTCAAGAAGTAACTACTAAGAGTGAACAACACTCGACAATAGTTT
CTGACTCATTTGTCGAAGAGCAGCATGATTCTTTCGAACGGGCTACAAGA
AATTTTATGGACTCTGAACAGTCTGAAGCAGAGCCAAAGTCGCCACCAGG
GACCCCGCTGAGGGCTGATGATGAATCCCAACCGACGAGGCGAGTTTTGG
CGAATCCGGACGCGCAGTCATGCACATCCGAGACTCACGATCAAGGGCTA
CAAAATGATCTTGAGCACCTAAGCACCGCTCTGACACAGGAAGAGGAAAA
GCTTGTATCTGTTGGCCAAACCACCGCTGTGGAACAAGCCGGTGATAAAG
AGCAAGGAAGAGTTAGTATTATTCACCTCTACATTCAACCCATTCATGGT
TGTCCTCCGCAGGCCGTGACTTCAATAAGACTCACCCAACATGGCGTTGA
AAACCATCTCATGTACGCTGTTTCCGACTTTACCGGTCGATACATTTCGA
ACGAGAAAGTTCCAGTGCTTTCGGAAGTTACCCCTACTATTCTAGAGAAC
GGTCATTTGCGTCTTTCTGCGCCAGGTCTATCGACATTAATGCACGAACC
GAAGTTCTGGGGTCAGAAAATGAAGATTACCATCCACGGCATTCAATATG
AAGCTGTGGATCAGGGTGATGGTGTGTCACAGTTCTTTGCCAGCTATTTG
GAAATACCAGGAGCACGTCTCTTGTTGATTCGACCACCTCCGGTCTCAGA
CAAAGGCCATCGTCTGTTCAGGACCTGGCCTACTGCCGATCGGCCGCTGC
TTCTGATAGGCAAAGAAGAAAAAGGAGCTTCCGCCGTAGACAATGGTCGT
GCACTTGTAGGAACTAATGTAGTGATTTCTGCTTCAGAGTCGGATTTAAC
GAGCTCTACATCCATCAAAATCGATGATTATCTCTTTGAAATCGTGAAGA
TTCCCAGTGAGAGCTCTTATGAAAGAGTTCCTCCACATCACCTTCTGGGA
GGGAGAGAGGCTTTGGTTCCTGTCAACTTGGGAAGAAACGAATGGGTGGT
AAAGGAGGATCAGACCGTTATCATCAAGAACTCTGGTGTGGACCAGAGCC
CCTAA