Gcaud2350.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2350.t1
Unique NameGcaud2350.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length95
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_48_length_65905_cov_4.503282contigNODE_48_length_65905_cov_4.503282:39420..39704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT491CT
PFAMsMttA_Hcf106
Max annot lvl2759|Eukaryota
KEGG koko:K03116
KEGG TC2.A.64
KEGG Pathwayko03060,ko03070,map03060,map03070
KEGG ModuleM00336
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006605,GO:0006612,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009977,GO:0015031,GO:0015291,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0017038,GO:0022804,GO:0022857,GO:0022884,GO:0031224,GO:0031360,GO:0031361,GO:0031976,GO:0031984,GO:0033036,GO:0033365,GO:0034357,GO:0034613,GO:0042651,GO:0042886,GO:0042887,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043953,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045036,GO:0045038,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055035,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0072594,GO:0072596,GO:0072598,GO:0072657,GO:0090150,GO:1904680
Evalue1.13e-18
EggNOG OGsCOG1826@1|root,2S4T0@2759|Eukaryota
DescriptionmttA/Hcf106 family
COG categoryU
BRITEko00000,ko00001,ko00002,ko02044
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2350Gcaud2350Gracilaria caudata M_176_S67 malegeneNODE_48_length_65905_cov_4.503282 39420..39704 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2350.t1.stop1Gcaud2350.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_48_length_65905_cov_4.503282 39420..39422 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2350.t1.CDS1Gcaud2350.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_48_length_65905_cov_4.503282 39420..39704 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2350.t1.exon1Gcaud2350.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_48_length_65905_cov_4.503282 39420..39704 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2350.t1.start1Gcaud2350.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_48_length_65905_cov_4.503282 39702..39704 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2350.t1Gcaud2350.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_48_length_65905_cov_4.503282 39420..39704 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2350.t1 ID=Gcaud2350.t1|Name=Gcaud2350.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=95bp
MGLFGLGLPELAVIAGVGIFIFGPNKIAELGKDLGGLAGGLKKASTEFRD
AMQESLDEADRELEQKRVEKASVSGASDSPSATAVESKQEKAEA*
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spliced messenger RNA

>Gcaud2350.t1 ID=Gcaud2350.t1|Name=Gcaud2350.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=285bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:39420..39704- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCTGTTCGGTCTTGGTCTACCGGAATTGGCTGTGATTGCAGGAGT
AGGAATATTTATCTTTGGCCCGAACAAGATTGCAGAACTTGGAAAAGATC
TTGGAGGGTTGGCAGGAGGCTTGAAGAAAGCTTCGACAGAGTTCAGAGAC
GCCATGCAGGAAAGTCTGGATGAGGCAGATCGCGAGCTTGAACAGAAGCG
GGTAGAGAAGGCATCTGTCTCTGGGGCGTCTGATAGTCCTAGTGCTACCG
CTGTCGAAAGCAAACAGGAAAAAGCCGAAGCATAG
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protein sequence of Gcaud2350.t1

>Gcaud2350.t1 ID=Gcaud2350.t1|Name=Gcaud2350.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=95bp
MGLFGLGLPELAVIAGVGIFIFGPNKIAELGKDLGGLAGGLKKASTEFRD
AMQESLDEADRELEQKRVEKASVSGASDSPSATAVESKQEKAEA*
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mRNA from alignment at NODE_48_length_65905_cov_4.503282:39420..39704-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2350.t1 ID=Gcaud2350.t1|Name=Gcaud2350.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=285bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:39420..39704- (Gracilaria caudata M_176_S67 male)
ATGGGCCTGTTCGGTCTTGGTCTACCGGAATTGGCTGTGATTGCAGGAGT
AGGAATATTTATCTTTGGCCCGAACAAGATTGCAGAACTTGGAAAAGATC
TTGGAGGGTTGGCAGGAGGCTTGAAGAAAGCTTCGACAGAGTTCAGAGAC
GCCATGCAGGAAAGTCTGGATGAGGCAGATCGCGAGCTTGAACAGAAGCG
GGTAGAGAAGGCATCTGTCTCTGGGGCGTCTGATAGTCCTAGTGCTACCG
CTGTCGAAAGCAAACAGGAAAAAGCCGAAGCATAG
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Coding sequence (CDS) from alignment at NODE_48_length_65905_cov_4.503282:39420..39704-

>Gcaud2350.t1 ID=Gcaud2350.t1|Name=Gcaud2350.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=285bp|location=Sequence derived from alignment at NODE_48_length_65905_cov_4.503282:39420..39704- (Gracilaria caudata M_176_S67 male)
ATGGGCCTGTTCGGTCTTGGTCTACCGGAATTGGCTGTGATTGCAGGAGT
AGGAATATTTATCTTTGGCCCGAACAAGATTGCAGAACTTGGAAAAGATC
TTGGAGGGTTGGCAGGAGGCTTGAAGAAAGCTTCGACAGAGTTCAGAGAC
GCCATGCAGGAAAGTCTGGATGAGGCAGATCGCGAGCTTGAACAGAAGCG
GGTAGAGAAGGCATCTGTCTCTGGGGCGTCTGATAGTCCTAGTGCTACCG
CTGTCGAAAGCAAACAGGAAAAAGCCGAAGCATAG
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