Gcaud2340.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2340.t1
Unique NameGcaud2340.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length267
Homology
BLAST of Gcaud2340.t1 vs. uniprot
Match: A0A2V3J0C9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0C9_9FLOR)

HSP 1 Score: 372 bits (956), Expect = 5.640e-128
Identity = 182/266 (68.42%), Postives = 225/266 (84.59%), Query Frame = 0
Query:    1 MASATPQAPDQLPPAPRFWGPFRPLFGGHTLFEAATSSFIPTFVVFLWRFLFACFLVIVLVYYAVMDVYRFESYAVWAHIGLALSFFLLSMCSFLFLIQKQHQPEPSRLAFCTILLYQIFATAAVFFDLVFWVFLFDYSQSPEFSQLAQNTLNVGLVVFDLVLSLRIQFKLVYSVTFVAFTLIYVIFVWARFAVTDTFVYDFLDYRSQSNGITVAYYVGGLAWALVASFIVFLFSRLNRLPCVKVRSTYSKEGSPASHRNRYFAFV 266
            MA+A PQAPD LPPAP+FWGPFRPLFGGHTLFEAATS F+PTFVVF+WRF+F+CFL+  LVY+AV  VY+F+ Y+VW HIGLA+SFF LSMCSF+FL+QK+H+PE SRLAF +ILLYQIFATA +F D+VFW  L +Y ++P F+ + Q+  N+ +VV DL+L+LRIQFKL+Y V FV FTL Y+ F+W RFAVTD+FVYDF DYR  +  ITVAYY+G +AWA  A+F++FL SRL+R+P VKVRST+SK+GSPASHRNRYFAFV
Sbjct:    1 MANALPQAPDDLPPAPKFWGPFRPLFGGHTLFEAATSCFLPTFVVFVWRFVFSCFLLTTLVYFAVTGVYQFQFYSVWVHIGLAISFFALSMCSFVFLLQKEHRPESSRLAFASILLYQIFATATLFLDVVFWALLHEYDEAPSFAVVVQHAANLAMVVVDLLLALRIQFKLIYCVCFVLFTLTYLAFMWIRFAVTDSFVYDFTDYRQHAAAITVAYYIGTVAWAFAAAFVMFLISRLSRVPFVKVRSTFSKDGSPASHRNRYFAFV 266          
BLAST of Gcaud2340.t1 vs. uniprot
Match: R7QCV6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCV6_CHOCR)

HSP 1 Score: 178 bits (451), Expect = 2.880e-52
Identity = 93/188 (49.47%), Postives = 132/188 (70.21%), Query Frame = 0
Query:   60 LVYYAVMDVYRFESYAVWAHIGLALSFFLLSMCSFLFLI-QKQHQPEPSRLAFCTILLYQIFATAAVFFDLVFWVFLFDYSQSPEFSQLAQNTLNVGLVVFDLVLSLRIQFKLVYSVTFVAFTLIYVIFVWARFAVTDTFVYDFLDYRSQSNGITVAYYVGGLAWALVASFIVFLFSRLNRLPCVKVR 246
            L+ Y++  VY ++ Y++W HIG+A++F L +  S L+L  Q   +   + LAF   L +Q+FA AA+F D+VFW  LFD+  SP F+QL+Q+ +N+  V+ DL+LS R+QFKL+Y V F+A+T+ Y+ F W RFA+TD +VY FLDY  QS G+TVAYY G L WA VA+FI+ L S+L+R PCV  R
Sbjct:    5 LIVYSIRGVYTYQFYSIWCHIGIAIAFTLNASASALYLFSQSPRRDNITFLAFFIFLWFQVFAIAALFLDVVFWTILFDFDGSPTFAQLSQHAVNLVFVLLDLLLSARMQFKLLYGVVFIAYTIGYLTFAWIRFAITDDWVYGFLDYTDQSAGLTVAYYFGVLLWAFVAAFIMILVSKLSRCPCVTAR 192          
BLAST of Gcaud2340.t1 vs. uniprot
Match: R7QCT6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCT6_CHOCR)

HSP 1 Score: 60.8 bits (146), Expect = 5.690e-7
Identity = 58/212 (27.36%), Postives = 97/212 (45.75%), Query Frame = 0
Query:   60 LVYYAVMDVYRFESYAVWAHIGLALSFFLLSMCSFLFLIQKQHQPEPSRL--------------------------AFCTILLYQIFATAAVFFDLVFWVFLFDYSQSPEFSQ--LAQNTLNVGLVVFDLVLSLRIQFKLVYSVTFVAFTLIYVIFVWARFAVTDTFVYDFLD-------YRSQSNGITVAYYVGGLAWALVASFIVFLFSR 236
            +VY+ +   +    YA WA+ GLAL+F     CS + L+++    E  R+                          A  T+ LYQ+F T +VF  +VFW  +    QS + S   LA N +   + V D++LS+ I+F+LVY +    F   Y   ++  +     +VY+F++       + +++ G+ VA  V GL    V +F   +F R
Sbjct:    6 MVYFTLTSAFSPRLYATWAYAGLALAFVGAVFCSLMQLLREDIVKEAMRVDEEDGGHAADTLLGQEPVDRGLARFVAQVTVPLYQVFVTVSVFGAVVFWAAILPV-QSADISYPLLALNAIAPAVAVLDVLLSMSIEFRLVYVLLVALFNAAYAGTLYVFYKTDGIYVYNFINPSQEKGAFIAKTTGLAVASIVAGLFVYSVTAFSGLMFRR 216          
The following BLAST results are available for this feature:
BLAST of Gcaud2340.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J0C9_9FLOR5.640e-12868.42Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QCV6_CHOCR2.880e-5249.47Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QCT6_CHOCR5.690e-727.36Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12242UNCHARACTERIZEDcoord: 29..239
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 195..213
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 77..97
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 172..194
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 46..65
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 166..171
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 66..76
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 214..234
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 147..165
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 98..108
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 109..135
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 136..146
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 235..266
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..45
NoneNo IPR availableTMHMMTMhelixcoord: 76..98
NoneNo IPR availableTMHMMTMhelixcoord: 213..235
NoneNo IPR availableTMHMMTMhelixcoord: 44..66
NoneNo IPR availableTMHMMTMhelixcoord: 110..132
NoneNo IPR availableTMHMMTMhelixcoord: 171..193
NoneNo IPR availableTMHMMTMhelixcoord: 147..164
IPR039860Protein rolling stonePANTHERPTHR12242:SF1IP08657P-RELATEDcoord: 29..239

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_48_length_65905_cov_4.503282contigNODE_48_length_65905_cov_4.503282:16299..17099 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2340.t1Gcaud2340.t1Gracilaria caudata M_176_S67 malemRNANODE_48_length_65905_cov_4.503282 16299..17099 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2340.t1 ID=Gcaud2340.t1|Name=Gcaud2340.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=267bp
MASATPQAPDQLPPAPRFWGPFRPLFGGHTLFEAATSSFIPTFVVFLWRF
LFACFLVIVLVYYAVMDVYRFESYAVWAHIGLALSFFLLSMCSFLFLIQK
QHQPEPSRLAFCTILLYQIFATAAVFFDLVFWVFLFDYSQSPEFSQLAQN
TLNVGLVVFDLVLSLRIQFKLVYSVTFVAFTLIYVIFVWARFAVTDTFVY
DFLDYRSQSNGITVAYYVGGLAWALVASFIVFLFSRLNRLPCVKVRSTYS
KEGSPASHRNRYFAFV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039860Rost